Wall clock time and date at job start Tue Mar 31 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46791 * 2 1 4 4 C 1.50697 * 109.47183 * 239.99910 * 2 1 3 5 5 C 1.37979 * 119.50855 * 85.00248 * 4 2 1 6 6 C 1.40016 * 119.11923 * 180.02562 * 5 4 2 7 7 C 1.48010 * 120.89837 * 179.97438 * 6 5 4 8 8 O 1.21565 * 119.99853 * 140.41193 * 7 6 5 9 9 N 1.34770 * 120.00086 * 320.41310 * 7 6 5 10 10 C 1.36801 * 120.00249 * 184.47785 * 9 7 6 11 11 H 1.08003 * 119.99961 * 224.20886 * 10 9 7 12 12 C 1.39095 * 119.99918 * 44.20869 * 10 9 7 13 13 N 1.31326 * 120.00153 * 10.50119 * 12 10 9 14 14 Si 1.86797 * 120.00148 * 190.49409 * 12 10 9 15 15 H 1.48497 * 109.47329 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46963 * 120.00457 * 14 12 10 17 17 H 1.48499 * 109.47540 * 239.99971 * 14 12 10 18 18 C 1.46507 * 120.00135 * 4.48203 * 9 7 6 19 19 C 1.52991 * 117.50175 * 185.40288 * 18 9 7 20 20 C 1.52993 * 117.50290 * 116.77716 * 18 9 7 21 21 C 1.39706 * 118.20581 * 359.97438 * 6 5 4 22 22 C 1.38804 * 118.93873 * 0.02562 * 21 6 5 23 23 O 1.35682 * 119.61916 * 180.02562 * 22 21 6 24 24 N 1.31903 * 119.50956 * 264.72286 * 4 2 1 25 25 H 1.08996 * 109.47363 * 60.00554 * 1 2 3 26 26 H 1.09002 * 109.47291 * 300.00088 * 1 2 3 27 27 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47363 * 119.99446 * 2 1 3 29 29 H 1.09003 * 109.47024 * 299.99612 * 3 2 1 30 30 H 1.08990 * 109.47592 * 59.99665 * 3 2 1 31 31 H 1.09000 * 109.47031 * 179.97438 * 3 2 1 32 32 H 1.07997 * 120.44131 * 0.02562 * 5 4 2 33 33 H 0.97004 * 120.00256 * 184.98823 * 13 12 10 34 34 H 1.09006 * 115.54462 * 331.11014 * 18 9 7 35 35 H 1.09008 * 117.49810 * 359.97438 * 19 18 9 36 36 H 1.08999 * 117.50361 * 145.01490 * 19 18 9 37 37 H 1.09001 * 117.50115 * 214.98012 * 20 18 9 38 38 H 1.09007 * 117.49838 * 359.97438 * 20 18 9 39 39 H 1.08002 * 120.53176 * 180.02562 * 21 6 5 40 40 H 0.96704 * 113.99958 * 90.00595 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.1602 -0.0123 -2.4137 6 6 2.6272 -0.6805 -3.5520 7 6 2.7790 0.0298 -4.8416 8 8 3.7371 -0.2007 -5.5534 9 7 1.8551 0.9323 -5.2267 10 6 1.9458 1.5213 -6.4580 11 1 1.7865 2.5845 -6.5611 12 6 2.2433 0.7509 -7.5773 13 7 2.2340 -0.5597 -7.4937 14 14 2.6560 1.5804 -9.1993 15 1 2.5988 3.0546 -9.0301 16 1 4.0226 1.1840 -9.6243 17 1 1.6754 1.1619 -10.2330 18 6 0.7535 1.2826 -4.3266 19 6 -0.3314 2.2157 -4.8676 20 6 0.6748 2.7296 -3.8361 21 6 2.9461 -2.0359 -3.4377 22 6 2.7878 -2.6618 -2.2090 23 8 3.0937 -3.9776 -2.0823 24 7 2.3484 -1.9890 -1.1589 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8898 31 1 3.1299 1.4426 0.0005 32 1 1.9036 1.0357 -2.4611 33 1 2.5114 -1.0961 -8.2529 34 1 0.4447 0.4990 -3.6345 35 1 -0.2255 2.5694 -5.8932 36 1 -1.3545 2.0463 -4.5318 37 1 0.3138 2.8982 -2.8215 38 1 1.4429 3.4210 -4.1827 39 1 3.3099 -2.5879 -4.2918 40 1 4.0120 -4.1453 -1.8298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271722669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:50 Heat of formation + Delta-G solvation = -0.508293 kcal Electronic energy + Delta-G solvation = -23940.816673 eV Core-core repulsion = 20529.524239 eV Total energy + Delta-G solvation = -3411.292434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46230 -38.57129 -37.24736 -36.24807 -34.75504 -33.03700 -32.09912 -30.82851 -29.17629 -27.16612 -25.65496 -23.78884 -23.55269 -21.84418 -21.29356 -20.82241 -19.34656 -18.14394 -17.03575 -16.25884 -16.22523 -15.65564 -15.10461 -14.68527 -14.49934 -14.21694 -14.08393 -13.74904 -13.56317 -13.06579 -13.00611 -12.50501 -12.09842 -11.93316 -11.80448 -11.59705 -11.29070 -11.22359 -11.13721 -11.02595 -10.95827 -10.79754 -10.77445 -10.25567 -10.09868 -9.86521 -9.29214 -9.22722 -8.86425 -8.45000 -8.20330 -7.19791 -6.20162 -4.04136 1.30034 1.40069 3.23206 3.30638 3.33542 3.57163 3.91993 4.08848 4.25751 4.58156 4.66253 4.75475 4.93455 5.13400 5.17808 5.30981 5.37540 5.38044 5.48217 5.53471 5.60826 5.67107 5.74753 5.81143 5.84650 5.87361 5.97022 6.07717 6.11477 6.18195 6.24960 6.32918 6.45175 6.62368 6.64428 6.80265 6.84457 7.48594 7.71426 8.11579 8.19729 8.88960 8.98935 9.46294 10.09875 10.84956 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017099 B = 0.006193 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.115892 B = 4520.350484 C = 5729.716935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.150 4.150 4 C 0.144 3.856 5 C -0.164 4.164 6 C -0.032 4.032 7 C 0.514 3.486 8 O -0.518 6.518 9 N -0.412 5.412 10 C -0.337 4.337 11 H 0.084 0.916 12 C 0.063 3.937 13 N -0.828 5.828 14 Si 0.916 3.084 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.283 1.283 18 C 0.064 3.936 19 C -0.173 4.173 20 C -0.208 4.208 21 C -0.144 4.144 22 C 0.299 3.701 23 O -0.482 6.482 24 N -0.505 5.505 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.150 0.850 33 H 0.267 0.733 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.631 2.175 12.703 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.207 4.207 4 C 0.007 3.993 5 C -0.185 4.185 6 C -0.044 4.044 7 C 0.301 3.699 8 O -0.396 6.396 9 N -0.131 5.131 10 C -0.464 4.464 11 H 0.102 0.898 12 C -0.148 4.148 13 N -0.461 5.461 14 Si 0.742 3.258 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.209 1.209 18 C -0.042 4.042 19 C -0.211 4.211 20 C -0.247 4.247 21 C -0.166 4.166 22 C 0.121 3.879 23 O -0.289 6.289 24 N -0.225 5.225 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.168 0.832 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.163 0.837 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.792 1.289 12.761 13.126 hybrid contribution 0.711 0.493 -1.503 1.734 sum -2.081 1.782 11.258 11.586 Atomic orbital electron populations 1.21815 0.93752 1.02305 1.02122 1.20005 0.96111 0.95295 0.94707 1.21954 1.01492 0.94860 1.02430 1.20759 0.95644 0.88355 0.94575 1.22510 1.01087 1.02594 0.92269 1.20941 0.93717 0.93639 0.96103 1.17573 0.84286 0.83804 0.84212 1.90628 1.30847 1.64664 1.53424 1.42583 1.18740 1.38164 1.13623 1.19009 1.52984 0.92454 0.81988 0.89841 1.25338 0.95747 0.94841 0.98904 1.69808 1.39959 1.04502 1.31848 0.86082 0.78254 0.79406 0.82033 1.19416 1.20564 1.20935 1.22020 0.93112 0.91647 0.97418 1.23124 0.93844 1.04068 1.00064 1.23378 1.03488 0.99356 0.98428 1.22205 1.01399 0.94393 0.98646 1.18915 0.96494 0.84069 0.88423 1.84787 1.34246 1.18783 1.91049 1.66692 1.13700 1.09007 1.33083 0.92237 0.92004 0.92364 0.89479 0.91704 0.91939 0.92314 0.83210 0.92253 0.87337 0.87366 0.89598 0.89467 0.88780 0.83741 0.74861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.17 37.16 0.34 -1.19 16 2 C -0.04 -0.51 3.23 -91.77 -0.30 -0.80 16 3 C -0.15 -1.55 8.62 37.16 0.32 -1.23 16 4 C 0.14 2.29 5.79 -82.66 -0.48 1.81 16 5 C -0.16 -2.86 6.64 -39.01 -0.26 -3.12 16 6 C -0.03 -0.69 5.34 -104.68 -0.56 -1.25 16 7 C 0.51 13.15 6.52 -12.26 -0.08 13.07 16 8 O -0.52 -15.28 14.66 5.31 0.08 -15.21 16 9 N -0.41 -10.09 2.85 -108.74 -0.31 -10.40 16 10 C -0.34 -8.90 7.86 -15.02 -0.12 -9.02 16 11 H 0.08 2.10 7.31 -52.48 -0.38 1.72 16 12 C 0.06 1.71 4.64 -17.45 -0.08 1.63 16 13 N -0.83 -24.07 11.30 55.50 0.63 -23.44 16 14 Si 0.92 21.16 29.57 -169.99 -5.03 16.13 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 C 0.06 1.24 4.40 -67.93 -0.30 0.94 16 19 C -0.17 -2.97 9.80 -26.74 -0.26 -3.24 16 20 C -0.21 -3.28 9.54 -26.74 -0.26 -3.54 16 21 C -0.14 -2.90 9.70 -38.82 -0.38 -3.27 16 22 C 0.30 5.34 7.74 -17.17 -0.13 5.21 16 23 O -0.48 -7.39 13.56 -18.75 -0.25 -7.65 16 24 N -0.50 -8.76 10.27 -9.61 -0.10 -8.85 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.69 6.48 -51.93 -0.34 0.35 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.15 2.41 3.72 -52.49 -0.20 2.22 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.11 2.01 5.81 -51.93 -0.30 1.71 16 35 H 0.11 2.05 6.78 -51.92 -0.35 1.70 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.14 3.02 8.06 -52.49 -0.42 2.59 16 40 H 0.39 3.91 9.06 45.56 0.41 4.33 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -33.32 331.32 -7.05 -40.37 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.52 Total: 8.06 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.54 Total: -4.00 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.22 Total: -42.70 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.18 Total: -22.85 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.32 -7.05 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271722669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.863 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds