Wall clock time and date at job start Tue Mar 31 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46791 * 2 1 4 4 C 1.50697 * 109.47183 * 239.99910 * 2 1 3 5 5 C 1.37979 * 119.50855 * 85.00248 * 4 2 1 6 6 C 1.40016 * 119.11923 * 180.02562 * 5 4 2 7 7 C 1.48010 * 120.89837 * 179.97438 * 6 5 4 8 8 O 1.21565 * 119.99853 * 140.41193 * 7 6 5 9 9 N 1.34770 * 120.00086 * 320.41310 * 7 6 5 10 10 C 1.36801 * 120.00249 * 184.47785 * 9 7 6 11 11 H 1.08003 * 119.99961 * 224.20886 * 10 9 7 12 12 C 1.39095 * 119.99918 * 44.20869 * 10 9 7 13 13 N 1.31326 * 120.00153 * 10.50119 * 12 10 9 14 14 Si 1.86797 * 120.00148 * 190.49409 * 12 10 9 15 15 H 1.48497 * 109.47329 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46963 * 120.00457 * 14 12 10 17 17 H 1.48499 * 109.47540 * 239.99971 * 14 12 10 18 18 C 1.46507 * 120.00135 * 4.48203 * 9 7 6 19 19 C 1.52991 * 117.50175 * 185.40288 * 18 9 7 20 20 C 1.52993 * 117.50290 * 116.77716 * 18 9 7 21 21 C 1.39706 * 118.20581 * 359.97438 * 6 5 4 22 22 C 1.38804 * 118.93873 * 0.02562 * 21 6 5 23 23 O 1.35682 * 119.61916 * 180.02562 * 22 21 6 24 24 N 1.31903 * 119.50956 * 264.72286 * 4 2 1 25 25 H 1.08996 * 109.47363 * 60.00554 * 1 2 3 26 26 H 1.09002 * 109.47291 * 300.00088 * 1 2 3 27 27 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47363 * 119.99446 * 2 1 3 29 29 H 1.09003 * 109.47024 * 299.99612 * 3 2 1 30 30 H 1.08990 * 109.47592 * 59.99665 * 3 2 1 31 31 H 1.09000 * 109.47031 * 179.97438 * 3 2 1 32 32 H 1.07997 * 120.44131 * 0.02562 * 5 4 2 33 33 H 0.97004 * 120.00256 * 184.98823 * 13 12 10 34 34 H 1.09006 * 115.54462 * 331.11014 * 18 9 7 35 35 H 1.09008 * 117.49810 * 359.97438 * 19 18 9 36 36 H 1.08999 * 117.50361 * 145.01490 * 19 18 9 37 37 H 1.09001 * 117.50115 * 214.98012 * 20 18 9 38 38 H 1.09007 * 117.49838 * 359.97438 * 20 18 9 39 39 H 1.08002 * 120.53176 * 180.02562 * 21 6 5 40 40 H 0.96704 * 113.99958 * 90.00595 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.1602 -0.0123 -2.4137 6 6 2.6272 -0.6805 -3.5520 7 6 2.7790 0.0298 -4.8416 8 8 3.7371 -0.2007 -5.5534 9 7 1.8551 0.9323 -5.2267 10 6 1.9458 1.5213 -6.4580 11 1 1.7865 2.5845 -6.5611 12 6 2.2433 0.7509 -7.5773 13 7 2.2340 -0.5597 -7.4937 14 14 2.6560 1.5804 -9.1993 15 1 2.5988 3.0546 -9.0301 16 1 4.0226 1.1840 -9.6243 17 1 1.6754 1.1619 -10.2330 18 6 0.7535 1.2826 -4.3266 19 6 -0.3314 2.2157 -4.8676 20 6 0.6748 2.7296 -3.8361 21 6 2.9461 -2.0359 -3.4377 22 6 2.7878 -2.6618 -2.2090 23 8 3.0937 -3.9776 -2.0823 24 7 2.3484 -1.9890 -1.1589 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8898 31 1 3.1299 1.4426 0.0005 32 1 1.9036 1.0357 -2.4611 33 1 2.5114 -1.0961 -8.2529 34 1 0.4447 0.4990 -3.6345 35 1 -0.2255 2.5694 -5.8932 36 1 -1.3545 2.0463 -4.5318 37 1 0.3138 2.8982 -2.8215 38 1 1.4429 3.4210 -4.1827 39 1 3.3099 -2.5879 -4.2918 40 1 4.0120 -4.1453 -1.8298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271722669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:50 Heat of formation + Delta-G solvation = -25.450164 kcal Electronic energy + Delta-G solvation = -23941.898234 eV Core-core repulsion = 20529.524239 eV Total energy + Delta-G solvation = -3412.373995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90849 -40.25886 -38.49716 -37.90352 -35.90005 -34.91896 -33.67965 -32.66261 -30.51553 -28.00135 -27.50200 -25.19956 -25.06261 -23.19895 -22.79601 -22.22757 -20.88785 -19.52074 -18.57462 -17.93040 -17.79514 -17.14083 -16.75829 -16.18342 -16.09687 -15.56392 -15.46684 -15.02657 -14.93380 -14.68042 -14.44529 -13.77977 -13.56792 -13.34343 -12.99259 -12.87754 -12.84115 -12.78499 -12.73630 -12.33321 -12.25084 -12.06451 -11.98455 -11.71713 -11.69247 -11.31469 -10.91536 -10.82648 -10.66236 -10.02510 -9.81028 -9.11089 -8.23318 -6.11671 -0.15345 -0.05812 1.36316 1.41393 1.51137 2.05273 2.29194 2.54652 2.64547 2.93910 3.06514 3.30013 3.50117 3.68613 3.92507 4.00130 4.06883 4.13060 4.22347 4.30275 4.31709 4.40521 4.47406 4.73196 4.74478 4.87701 4.91907 4.99849 5.04016 5.05986 5.15768 5.23903 5.26288 5.41404 5.43445 5.46569 5.50536 5.52245 6.11005 6.56512 6.83437 6.90568 7.06367 7.51744 8.17900 8.80947 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017099 B = 0.006193 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.115892 B = 4520.350484 C = 5729.716935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C -0.149 4.149 4 C 0.156 3.844 5 C -0.154 4.154 6 C -0.054 4.054 7 C 0.501 3.499 8 O -0.577 6.577 9 N -0.423 5.423 10 C -0.345 4.345 11 H 0.091 0.909 12 C 0.007 3.993 13 N -0.871 5.871 14 Si 0.978 3.022 15 H -0.251 1.251 16 H -0.293 1.293 17 H -0.275 1.275 18 C 0.029 3.971 19 C -0.170 4.170 20 C -0.172 4.172 21 C -0.168 4.168 22 C 0.311 3.689 23 O -0.485 6.485 24 N -0.506 5.506 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.167 0.833 33 H 0.261 0.739 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 4.106 15.552 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.059 4.059 3 C -0.206 4.206 4 C 0.018 3.982 5 C -0.174 4.174 6 C -0.065 4.065 7 C 0.290 3.710 8 O -0.459 6.459 9 N -0.142 5.142 10 C -0.473 4.473 11 H 0.109 0.891 12 C -0.198 4.198 13 N -0.506 5.506 14 Si 0.802 3.198 15 H -0.174 1.174 16 H -0.220 1.220 17 H -0.200 1.200 18 C -0.076 4.076 19 C -0.208 4.208 20 C -0.210 4.210 21 C -0.190 4.190 22 C 0.133 3.867 23 O -0.295 6.295 24 N -0.227 5.227 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.184 0.816 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.152 0.848 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -4.490 3.248 15.640 16.592 hybrid contribution 1.206 -0.109 -2.241 2.547 sum -3.284 3.139 13.399 14.148 Atomic orbital electron populations 1.21831 0.92293 1.02012 1.03679 1.20190 0.97135 0.95983 0.92615 1.21979 1.01150 0.93623 1.03885 1.21514 0.93356 0.87847 0.95514 1.22592 1.00288 1.03185 0.91362 1.20674 0.96263 0.94096 0.95439 1.18264 0.83701 0.83853 0.85206 1.90563 1.33127 1.66527 1.55654 1.42776 1.19842 1.37755 1.13805 1.19324 1.52170 0.92910 0.82895 0.89095 1.26258 0.95848 0.95294 1.02449 1.69946 1.42150 1.06039 1.32473 0.85134 0.77171 0.79383 0.78131 1.17420 1.21977 1.20037 1.22239 0.93193 0.93966 0.98201 1.23207 0.95293 1.02638 0.99613 1.23442 1.01866 0.95395 1.00323 1.22104 1.03245 0.94483 0.99193 1.18821 0.95581 0.84665 0.87632 1.84721 1.36387 1.17257 1.91119 1.66914 1.13771 1.09700 1.32269 0.92127 0.89040 0.93640 0.88642 0.91693 0.89032 0.92995 0.81599 0.93008 0.86500 0.89626 0.86359 0.84825 0.89899 0.86087 0.72008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.17 71.98 0.66 -1.76 16 2 C -0.04 -0.81 3.23 -11.54 -0.04 -0.85 16 3 C -0.15 -2.43 8.62 71.98 0.62 -1.81 16 4 C 0.16 4.60 5.79 42.49 0.25 4.85 16 5 C -0.15 -5.19 6.64 22.64 0.15 -5.04 16 6 C -0.05 -2.34 5.34 -19.90 -0.11 -2.44 16 7 C 0.50 26.83 6.52 86.84 0.57 27.39 16 8 O -0.58 -36.28 14.66 -3.92 -0.06 -36.33 16 9 N -0.42 -21.21 2.85 -616.23 -1.76 -22.97 16 10 C -0.35 -18.66 7.86 84.12 0.66 -18.00 16 11 H 0.09 4.62 7.31 -2.91 -0.02 4.60 16 12 C 0.01 0.42 4.64 84.97 0.39 0.81 16 13 N -0.87 -53.42 11.30 21.69 0.25 -53.17 16 14 Si 0.98 44.76 29.57 68.60 2.03 46.79 16 15 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 16 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 C 0.03 1.07 4.40 44.98 0.20 1.27 16 19 C -0.17 -5.43 9.80 30.59 0.30 -5.13 16 20 C -0.17 -4.84 9.54 30.59 0.29 -4.55 16 21 C -0.17 -7.06 9.70 22.76 0.22 -6.84 16 22 C 0.31 11.07 7.74 84.77 0.66 11.73 16 23 O -0.49 -14.57 13.56 -90.00 -1.22 -15.79 16 24 N -0.51 -16.76 10.27 -297.19 -3.05 -19.81 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.06 6.48 -2.39 -0.02 1.05 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.17 4.95 3.72 -2.91 -0.01 4.94 16 33 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.12 4.16 5.81 -2.38 -0.01 4.14 16 35 H 0.09 3.15 6.78 -2.38 -0.02 3.13 16 36 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.12 5.54 8.06 -2.91 -0.02 5.52 16 40 H 0.42 7.89 9.06 -74.05 -0.67 7.22 16 Total: -1.00 -77.45 331.32 1.41 -76.03 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.40 Total: 25.63 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.82 Total: -0.37 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -4.56 Total: -95.96 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -1.28 Total: -52.13 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -77.45 1.41 -76.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271722669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.584 kcal (2) G-P(sol) polarization free energy of solvation -77.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds