Wall clock time and date at job start Tue Mar 31 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46790 * 2 1 4 4 C 1.38119 * 120.03893 * 265.25268 * 3 2 1 5 5 C 1.38270 * 120.07401 * 180.25114 * 4 3 2 6 6 C 1.38317 * 120.15577 * 359.74897 * 5 4 3 7 7 C 1.38079 * 120.07358 * 359.97438 * 6 5 4 8 8 C 1.38910 * 120.03533 * 84.99996 * 3 2 1 9 9 N 1.39724 * 120.07911 * 0.02562 * 8 3 2 10 10 C 1.34772 * 120.00083 * 155.90862 * 9 8 3 11 11 O 1.21378 * 120.00011 * 354.16838 * 10 9 8 12 12 C 1.49353 * 120.00336 * 174.17955 * 10 9 8 13 13 O 1.21365 * 119.99435 * 0.81841 * 12 10 9 14 14 N 1.34774 * 120.00326 * 180.55223 * 12 10 9 15 15 C 1.46497 * 120.00025 * 354.73284 * 14 12 10 16 16 C 1.46505 * 119.99709 * 174.73781 * 14 12 10 17 17 C 1.50703 * 109.46992 * 89.99725 * 16 14 12 18 18 H 1.07996 * 119.99978 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99415 * 179.97438 * 17 16 14 20 20 N 1.31509 * 120.00563 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99627 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47091 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47324 * 119.99973 * 21 19 17 24 24 H 1.48499 * 109.46834 * 240.00126 * 21 19 17 25 25 H 1.08997 * 109.47343 * 299.99905 * 1 2 3 26 26 H 1.09004 * 109.47223 * 60.00333 * 1 2 3 27 27 H 1.09004 * 109.46648 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47343 * 240.00095 * 2 1 3 29 29 H 1.09004 * 109.47223 * 119.99667 * 2 1 3 30 30 H 1.07990 * 119.96209 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.92550 * 179.76668 * 5 4 3 32 32 H 1.08002 * 119.96606 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.03567 * 180.02562 * 7 6 5 34 34 H 0.96992 * 119.99820 * 335.90576 * 9 8 3 35 35 H 1.08993 * 109.46998 * 83.82735 * 15 14 12 36 36 H 1.09000 * 109.47115 * 203.83312 * 15 14 12 37 37 H 1.09003 * 109.47194 * 323.83020 * 15 14 12 38 38 H 1.08998 * 109.46433 * 209.99493 * 16 14 12 39 39 H 1.08989 * 109.47248 * 329.99490 * 16 14 12 40 40 H 0.97003 * 120.00213 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3560 2.0398 -1.1916 5 6 2.8218 3.3417 -1.1920 6 6 2.9603 4.0304 -0.0005 7 6 2.6331 3.4197 1.1938 8 6 2.1651 2.1114 1.1980 9 7 1.8341 1.4900 2.4049 10 6 2.3860 1.9187 3.5572 11 8 3.2486 2.7723 3.5362 12 6 1.9363 1.3435 4.8601 13 8 1.0845 0.4793 4.8800 14 7 2.4803 1.7802 6.0132 15 6 3.5920 2.7339 5.9837 16 6 1.9600 1.3012 7.2962 17 6 2.7061 0.0584 7.7084 18 1 3.4898 -0.3350 7.0779 19 6 2.3889 -0.5758 8.8908 20 7 1.4356 -0.0959 9.6593 21 14 3.3143 -2.1159 9.4021 22 1 4.3313 -2.4471 8.3721 23 1 3.9870 -1.8797 10.7047 24 1 2.3596 -3.2455 9.5356 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2494 1.5048 -2.1236 31 1 3.0778 3.8220 -2.1248 32 1 3.3241 5.0474 -0.0045 33 1 2.7412 3.9582 2.1237 34 1 1.2070 0.7500 2.4133 35 1 3.1998 3.7461 5.8858 36 1 4.1642 2.6537 6.9080 37 1 4.2391 2.5114 5.1353 38 1 2.0939 2.0734 8.0537 39 1 0.8994 1.0714 7.1952 40 1 1.2122 -0.5423 10.4910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271754103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:17 Heat of formation + Delta-G solvation = -35.318064 kcal Electronic energy + Delta-G solvation = -22884.335315 eV Core-core repulsion = 19471.533416 eV Total energy + Delta-G solvation = -3412.801899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01650 -39.32669 -37.81377 -35.65413 -34.66526 -33.86100 -32.59855 -30.12605 -29.26968 -28.05773 -26.25503 -24.71646 -24.00599 -23.13099 -21.59508 -20.87949 -19.46628 -17.77222 -17.12843 -16.69140 -16.27777 -15.70528 -15.66259 -15.26709 -14.77004 -14.44658 -14.16242 -13.90114 -13.86703 -13.67092 -13.19670 -13.03755 -12.44585 -12.40247 -12.15160 -12.10158 -12.01974 -11.67221 -11.33285 -11.10754 -11.08338 -10.94359 -10.78255 -10.62965 -10.43912 -10.22562 -9.69069 -8.93550 -8.73645 -8.51028 -8.11855 -7.82812 -6.11951 -4.17193 1.06592 1.30985 1.95602 2.67157 3.26881 3.34323 3.38990 3.56397 3.80557 3.99122 4.39287 4.57070 4.67995 4.72196 4.98274 5.02064 5.17936 5.22843 5.23632 5.35267 5.44370 5.54141 5.75983 5.78213 5.90666 5.94289 6.07029 6.08918 6.17818 6.29714 6.36744 6.46156 6.52215 6.77984 6.95936 7.18622 7.23978 7.33638 7.79235 7.87264 8.10462 8.15726 8.58171 8.87577 9.47955 10.96334 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.003738 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.348905 B = 7489.790558 C = 8136.777078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.113 4.113 4 C -0.098 4.098 5 C -0.141 4.141 6 C -0.104 4.104 7 C -0.131 4.131 8 C 0.155 3.845 9 N -0.648 5.648 10 C 0.507 3.493 11 O -0.499 6.499 12 C 0.493 3.507 13 O -0.522 6.522 14 N -0.561 5.561 15 C 0.077 3.923 16 C 0.242 3.758 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.901 3.099 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.422 0.578 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 5.837 -20.118 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.117 4.117 5 C -0.159 4.159 6 C -0.122 4.122 7 C -0.151 4.151 8 C 0.060 3.940 9 N -0.293 5.293 10 C 0.291 3.709 11 O -0.374 6.374 12 C 0.273 3.727 13 O -0.399 6.399 14 N -0.292 5.292 15 C -0.066 4.066 16 C 0.124 3.876 17 C -0.567 4.567 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.728 3.272 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.261 0.739 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.208 5.950 -19.792 20.702 hybrid contribution 0.246 -1.135 0.390 1.225 sum 1.453 4.815 -19.402 20.043 Atomic orbital electron populations 1.21792 0.94487 1.02171 1.02299 1.20526 0.96348 0.92407 1.03341 1.19646 1.03579 0.96348 0.91951 1.20789 0.99180 0.95055 0.96665 1.21090 1.01719 0.95071 0.98066 1.21041 0.99407 0.99864 0.91923 1.21484 1.00531 0.93059 1.00016 1.17695 0.99650 0.92119 0.84545 1.43355 1.45344 1.36076 1.04569 1.21007 0.81397 0.82643 0.85865 1.90635 1.28936 1.30774 1.87006 1.19531 0.84388 0.84342 0.84439 1.90749 1.32699 1.30053 1.86414 1.48130 1.32336 1.41856 1.06913 1.22067 0.89491 0.91574 1.03447 1.19533 0.96165 0.95077 0.76865 1.21411 1.19452 1.10314 1.05570 0.92166 1.24932 0.95192 0.97712 0.96171 1.69933 1.29917 1.40306 1.13056 0.86394 0.79685 0.82739 0.78344 1.19737 1.20859 1.20791 0.92545 0.92347 0.91929 0.90494 0.90926 0.85865 0.86181 0.85826 0.83464 0.73946 0.93138 0.91002 0.89896 0.94086 0.93517 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.81 37.16 0.36 -0.97 16 2 C -0.09 -0.86 5.44 -27.88 -0.15 -1.01 16 3 C -0.11 -1.28 5.15 -104.42 -0.54 -1.82 16 4 C -0.10 -0.97 9.68 -39.61 -0.38 -1.36 16 5 C -0.14 -1.37 10.04 -39.54 -0.40 -1.76 16 6 C -0.10 -1.14 10.04 -39.61 -0.40 -1.53 16 7 C -0.13 -1.75 8.73 -39.37 -0.34 -2.10 16 8 C 0.16 2.10 6.42 -83.75 -0.54 1.56 16 9 N -0.65 -9.59 4.99 -10.29 -0.05 -9.64 16 10 C 0.51 8.83 7.58 -11.63 -0.09 8.75 16 11 O -0.50 -8.71 10.37 5.47 0.06 -8.65 16 12 C 0.49 10.35 7.72 -11.63 -0.09 10.26 16 13 O -0.52 -12.27 16.12 5.48 0.09 -12.18 16 14 N -0.56 -12.22 2.86 -183.51 -0.52 -12.74 16 15 C 0.08 1.38 9.28 59.85 0.56 1.94 16 16 C 0.24 6.23 5.09 -5.19 -0.03 6.21 16 17 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 18 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 21 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.06 0.56 7.46 -51.93 -0.39 0.17 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 29 H 0.07 0.77 7.25 -51.93 -0.38 0.39 16 30 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.15 2.15 5.73 -52.49 -0.30 1.85 16 34 H 0.42 5.88 6.21 -40.82 -0.25 5.63 16 35 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 36 H 0.07 1.26 8.03 -51.93 -0.42 0.85 16 37 H 0.08 1.44 5.81 -51.93 -0.30 1.14 16 38 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 39 H 0.05 1.32 7.50 -51.94 -0.39 0.93 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -31.25 337.13 -7.43 -38.68 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.35 Total: 3.50 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -2.45 Total: 4.69 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.16 Total: -47.68 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.15 Total: -20.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.25 -7.43 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271754103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.363 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds