Wall clock time and date at job start Tue Mar 31 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46790 * 2 1 4 4 C 1.38119 * 120.03893 * 265.25268 * 3 2 1 5 5 C 1.38270 * 120.07401 * 180.25114 * 4 3 2 6 6 C 1.38317 * 120.15577 * 359.74897 * 5 4 3 7 7 C 1.38079 * 120.07358 * 359.97438 * 6 5 4 8 8 C 1.38910 * 120.03533 * 84.99996 * 3 2 1 9 9 N 1.39724 * 120.07911 * 0.02562 * 8 3 2 10 10 C 1.34772 * 120.00083 * 155.90862 * 9 8 3 11 11 O 1.21378 * 120.00011 * 354.16838 * 10 9 8 12 12 C 1.49353 * 120.00336 * 174.17955 * 10 9 8 13 13 O 1.21365 * 119.99435 * 0.81841 * 12 10 9 14 14 N 1.34774 * 120.00326 * 180.55223 * 12 10 9 15 15 C 1.46497 * 120.00025 * 354.73284 * 14 12 10 16 16 C 1.46505 * 119.99709 * 174.73781 * 14 12 10 17 17 C 1.50703 * 109.46992 * 89.99725 * 16 14 12 18 18 H 1.07996 * 119.99978 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99415 * 179.97438 * 17 16 14 20 20 N 1.31509 * 120.00563 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99627 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47091 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47324 * 119.99973 * 21 19 17 24 24 H 1.48499 * 109.46834 * 240.00126 * 21 19 17 25 25 H 1.08997 * 109.47343 * 299.99905 * 1 2 3 26 26 H 1.09004 * 109.47223 * 60.00333 * 1 2 3 27 27 H 1.09004 * 109.46648 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47343 * 240.00095 * 2 1 3 29 29 H 1.09004 * 109.47223 * 119.99667 * 2 1 3 30 30 H 1.07990 * 119.96209 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.92550 * 179.76668 * 5 4 3 32 32 H 1.08002 * 119.96606 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.03567 * 180.02562 * 7 6 5 34 34 H 0.96992 * 119.99820 * 335.90576 * 9 8 3 35 35 H 1.08993 * 109.46998 * 83.82735 * 15 14 12 36 36 H 1.09000 * 109.47115 * 203.83312 * 15 14 12 37 37 H 1.09003 * 109.47194 * 323.83020 * 15 14 12 38 38 H 1.08998 * 109.46433 * 209.99493 * 16 14 12 39 39 H 1.08989 * 109.47248 * 329.99490 * 16 14 12 40 40 H 0.97003 * 120.00213 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3560 2.0398 -1.1916 5 6 2.8218 3.3417 -1.1920 6 6 2.9603 4.0304 -0.0005 7 6 2.6331 3.4197 1.1938 8 6 2.1651 2.1114 1.1980 9 7 1.8341 1.4900 2.4049 10 6 2.3860 1.9187 3.5572 11 8 3.2486 2.7723 3.5362 12 6 1.9363 1.3435 4.8601 13 8 1.0845 0.4793 4.8800 14 7 2.4803 1.7802 6.0132 15 6 3.5920 2.7339 5.9837 16 6 1.9600 1.3012 7.2962 17 6 2.7061 0.0584 7.7084 18 1 3.4898 -0.3350 7.0779 19 6 2.3889 -0.5758 8.8908 20 7 1.4356 -0.0959 9.6593 21 14 3.3143 -2.1159 9.4021 22 1 4.3313 -2.4471 8.3721 23 1 3.9870 -1.8797 10.7047 24 1 2.3596 -3.2455 9.5356 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2494 1.5048 -2.1236 31 1 3.0778 3.8220 -2.1248 32 1 3.3241 5.0474 -0.0045 33 1 2.7412 3.9582 2.1237 34 1 1.2070 0.7500 2.4133 35 1 3.1998 3.7461 5.8858 36 1 4.1642 2.6537 6.9080 37 1 4.2391 2.5114 5.1353 38 1 2.0939 2.0734 8.0537 39 1 0.8994 1.0714 7.1952 40 1 1.2122 -0.5423 10.4910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271754103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:17 Heat of formation + Delta-G solvation = -54.135133 kcal Electronic energy + Delta-G solvation = -22885.151284 eV Core-core repulsion = 19471.533416 eV Total energy + Delta-G solvation = -3413.617869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.30513 -40.59524 -39.22569 -37.19305 -35.93006 -34.90415 -34.59929 -31.07409 -30.24547 -29.92862 -27.79559 -26.39312 -24.83173 -24.59774 -22.90017 -21.82140 -20.86768 -19.05643 -18.77232 -18.46340 -17.61883 -17.20103 -16.90710 -16.67215 -16.27754 -15.87354 -15.26464 -15.14110 -14.92646 -14.62706 -14.50272 -14.32840 -13.97399 -13.89968 -13.65713 -13.38194 -13.10956 -12.94247 -12.80630 -12.69271 -12.49087 -12.27860 -12.20648 -11.93302 -11.82505 -11.73529 -11.50471 -10.67458 -10.35881 -9.70037 -9.66537 -9.07704 -8.26598 -6.41180 -0.07153 0.44888 0.69755 1.26183 1.37803 1.39452 1.52028 2.07524 2.35659 2.54611 2.86407 3.04090 3.21932 3.77939 3.88932 4.17691 4.29878 4.36345 4.41511 4.44184 4.52854 4.58430 4.65349 4.69533 4.83739 4.96789 5.01268 5.06251 5.10802 5.14001 5.26424 5.35288 5.37784 5.40410 5.56167 5.63265 5.67966 5.95733 5.97480 6.07599 6.33491 6.60650 6.66976 6.93045 7.29248 8.81368 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.003738 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.348905 B = 7489.790558 C = 8136.777078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.113 4.113 4 C -0.097 4.097 5 C -0.131 4.131 6 C -0.109 4.109 7 C -0.150 4.150 8 C 0.123 3.877 9 N -0.635 5.635 10 C 0.516 3.484 11 O -0.501 6.501 12 C 0.487 3.513 13 O -0.555 6.555 14 N -0.570 5.570 15 C 0.081 3.919 16 C 0.256 3.744 17 C -0.547 4.547 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.969 3.031 22 H -0.269 1.269 23 H -0.269 1.269 24 H -0.278 1.278 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.143 0.857 33 H 0.129 0.871 34 H 0.424 0.576 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.012 0.988 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 5.669 -22.682 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.116 4.116 5 C -0.149 4.149 6 C -0.127 4.127 7 C -0.170 4.170 8 C 0.029 3.971 9 N -0.280 5.280 10 C 0.298 3.702 11 O -0.376 6.376 12 C 0.268 3.732 13 O -0.435 6.435 14 N -0.301 5.301 15 C -0.061 4.061 16 C 0.136 3.864 17 C -0.585 4.585 18 H 0.071 0.929 19 C -0.187 4.187 20 N -0.564 5.564 21 Si 0.794 3.206 22 H -0.194 1.194 23 H -0.194 1.194 24 H -0.204 1.204 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.340 5.812 -22.400 23.259 hybrid contribution -0.136 -1.018 1.047 1.467 sum 2.204 4.794 -21.352 21.994 Atomic orbital electron populations 1.21781 0.93999 1.02739 1.02033 1.20575 0.96729 0.91557 1.03747 1.19906 1.02969 0.97013 0.91655 1.21203 0.97905 0.95321 0.97124 1.21515 0.99718 0.94892 0.98779 1.21316 0.99011 1.00895 0.91518 1.21480 1.01825 0.93259 1.00468 1.17942 1.01997 0.92758 0.84399 1.43190 1.44696 1.35733 1.04409 1.20128 0.81927 0.82896 0.85216 1.90632 1.29213 1.30925 1.86875 1.20177 0.83616 0.83726 0.85633 1.90712 1.34036 1.31533 1.87221 1.48114 1.33334 1.42591 1.06054 1.22200 0.88482 0.91592 1.03836 1.19070 0.94186 0.94525 0.78656 1.21637 1.19631 1.11338 1.05923 0.92883 1.25813 0.95972 1.00862 0.96063 1.70034 1.31059 1.41747 1.13519 0.85339 0.78399 0.78558 0.78346 1.19376 1.19415 1.20387 0.94193 0.91195 0.90990 0.88231 0.92362 0.82756 0.82918 0.83875 0.85326 0.73722 0.91232 0.90847 0.89114 0.94629 0.96982 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.81 71.98 0.71 -1.72 16 2 C -0.09 -1.56 5.44 29.85 0.16 -1.40 16 3 C -0.11 -2.36 5.15 -19.73 -0.10 -2.46 16 4 C -0.10 -1.57 9.68 22.25 0.22 -1.36 16 5 C -0.13 -2.05 10.04 22.30 0.22 -1.82 16 6 C -0.11 -2.14 10.04 22.25 0.22 -1.92 16 7 C -0.15 -3.94 8.73 22.40 0.20 -3.74 16 8 C 0.12 3.27 6.42 38.22 0.25 3.51 16 9 N -0.63 -19.17 4.99 -304.84 -1.52 -20.69 16 10 C 0.52 18.40 7.58 87.24 0.66 19.06 16 11 O -0.50 -17.64 10.37 -3.33 -0.03 -17.68 16 12 C 0.49 21.23 7.72 87.24 0.67 21.90 16 13 O -0.56 -27.40 16.12 -3.29 -0.05 -27.45 16 14 N -0.57 -25.65 2.86 -852.85 -2.44 -28.08 16 15 C 0.08 2.90 9.28 127.77 1.19 4.09 16 16 C 0.26 13.74 5.09 85.63 0.44 14.18 16 17 C -0.55 -31.38 9.39 25.60 0.24 -31.14 16 18 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 19 C 0.01 0.71 5.46 84.66 0.46 1.18 16 20 N -0.92 -54.77 13.29 21.45 0.28 -54.48 16 21 Si 0.97 44.45 29.54 68.60 2.03 46.47 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H 0.04 0.78 7.46 -2.39 -0.02 0.76 16 26 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.10 1.30 8.05 -2.39 -0.02 1.28 16 29 H 0.06 1.20 7.25 -2.38 -0.02 1.18 16 30 H 0.15 1.54 8.06 -2.92 -0.02 1.52 16 31 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.13 3.80 5.73 -2.91 -0.02 3.78 16 34 H 0.42 12.24 6.21 -92.71 -0.58 11.67 16 35 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 36 H 0.07 2.59 8.03 -2.39 -0.02 2.57 16 37 H 0.09 3.15 5.81 -2.39 -0.01 3.13 16 38 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 39 H 0.01 0.72 7.50 -2.39 -0.02 0.71 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -68.70 337.13 4.28 -64.43 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.48 Total: 19.14 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 5.53 Total: 18.35 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -3.67 Total: -103.26 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.09 Total: -45.13 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.70 4.28 -64.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271754103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.292 kcal (2) G-P(sol) polarization free energy of solvation -68.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds