Wall clock time and date at job start Tue Mar 31 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46847 * 2 1 4 4 C 1.38297 * 119.92389 * 269.72492 * 3 2 1 5 5 C 1.38100 * 120.07240 * 179.76901 * 4 3 2 6 6 C 1.38923 * 119.92663 * 0.52877 * 5 4 3 7 7 N 1.39721 * 120.07998 * 179.70475 * 6 5 4 8 8 C 1.34775 * 119.99755 * 33.34598 * 7 6 5 9 9 O 1.21377 * 120.00116 * 5.28263 * 8 7 6 10 10 C 1.49356 * 119.99997 * 185.28114 * 8 7 6 11 11 O 1.21355 * 120.00112 * 359.97438 * 10 8 7 12 12 N 1.34783 * 119.99933 * 180.02562 * 10 8 7 13 13 C 1.46493 * 119.99672 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47149 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47214 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00202 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99906 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99811 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00081 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47295 * 59.99763 * 19 17 15 21 21 H 1.48498 * 109.47017 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46687 * 299.99654 * 19 17 15 23 23 C 1.38940 * 119.84716 * 359.72530 * 6 5 4 24 24 C 1.38092 * 119.92068 * 359.97438 * 23 6 5 25 25 H 1.09001 * 109.47730 * 59.99948 * 1 2 3 26 26 H 1.09005 * 109.47053 * 299.99883 * 1 2 3 27 27 H 1.09002 * 109.47324 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46945 * 119.99564 * 2 1 3 29 29 H 1.08995 * 109.47230 * 240.00126 * 2 1 3 30 30 H 1.07992 * 119.95815 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.03386 * 180.23472 * 5 4 3 32 32 H 0.96995 * 120.00546 * 213.35396 * 7 6 5 33 33 H 0.96999 * 119.99815 * 0.02562 * 12 10 8 34 34 H 1.09005 * 109.47415 * 299.99680 * 13 12 10 35 35 H 1.08992 * 109.47793 * 59.99575 * 13 12 10 36 36 H 1.08995 * 109.46798 * 300.00103 * 14 13 12 37 37 H 1.09007 * 109.46760 * 59.99645 * 14 13 12 38 38 H 0.96992 * 119.99485 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.03705 * 179.97438 * 23 6 5 40 40 H 1.08004 * 119.95728 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2676 2.0694 -1.1986 5 6 2.7234 3.3730 -1.2022 6 6 2.9559 4.0293 0.0000 7 7 3.4228 5.3461 0.0001 8 6 3.0435 6.1956 -0.9751 9 8 2.2225 5.8470 -1.7982 10 6 3.6334 7.5661 -1.0427 11 8 4.4539 7.9149 -0.2194 12 7 3.2536 8.4159 -2.0176 13 6 3.8327 9.7598 -2.0843 14 6 3.2363 10.5136 -3.2747 15 6 3.8314 11.8964 -3.3429 16 1 4.5623 12.2065 -2.6108 17 6 3.4429 12.7658 -4.3402 18 7 2.5525 12.3883 -5.2315 19 14 4.1811 14.4796 -4.4252 20 1 5.6531 14.3768 -4.5923 21 1 3.6013 15.2116 -5.5798 22 1 3.8753 15.2130 -3.1706 23 6 2.7234 3.3729 1.2023 24 6 2.2617 2.0715 1.1986 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 2.0908 1.5571 -2.1327 31 1 2.9033 3.8802 -2.1386 32 1 4.0201 5.6489 0.7018 33 1 2.5970 8.1374 -2.6750 34 1 3.6082 10.2983 -1.1635 35 1 4.9130 9.6844 -2.2068 36 1 3.4611 9.9751 -4.1953 37 1 2.1557 10.5891 -3.1525 38 1 2.2795 12.9998 -5.9332 39 1 2.9035 3.8800 2.1387 40 1 2.0804 1.5608 2.1328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273077153.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:19 Heat of formation + Delta-G solvation = -61.775006 kcal Electronic energy + Delta-G solvation = -21487.576290 eV Core-core repulsion = 18073.627131 eV Total energy + Delta-G solvation = -3413.949158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04517 -39.51865 -38.25964 -35.88497 -34.99524 -33.27191 -32.86266 -31.18272 -29.90080 -28.95464 -25.92606 -24.48575 -23.24857 -23.07986 -21.27115 -20.94125 -20.19021 -18.68715 -17.55717 -16.69785 -16.27426 -15.96924 -15.83667 -15.37271 -14.87555 -14.55836 -14.42728 -14.22525 -13.97479 -13.75998 -13.54928 -13.44273 -13.01246 -12.84483 -12.34444 -12.28216 -11.77897 -11.56406 -11.30317 -11.23172 -11.12097 -11.07237 -10.70867 -10.47336 -10.43052 -9.84864 -9.51655 -9.28539 -9.13178 -8.77424 -8.44551 -8.25866 -6.12314 -4.16277 0.87126 1.18994 1.61736 2.37735 3.24072 3.29189 3.33506 3.36026 3.58772 3.73617 4.37489 4.49677 4.53805 4.63429 4.76645 4.85651 5.05087 5.15932 5.21484 5.24465 5.29614 5.38532 5.57868 5.66023 5.79298 5.88479 6.04798 6.06031 6.12730 6.18828 6.23601 6.40552 6.51382 6.63188 6.76588 6.93849 7.40504 7.54067 7.55816 7.78745 7.84328 8.13666 8.26553 8.88992 9.48679 10.99096 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.002322 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.435033 B =12054.414356 C =12544.276474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.099 4.099 4 C -0.097 4.097 5 C -0.117 4.117 6 C 0.142 3.858 7 N -0.650 5.650 8 C 0.508 3.492 9 O -0.499 6.499 10 C 0.500 3.500 11 O -0.530 6.530 12 N -0.683 5.683 13 C 0.118 3.882 14 C 0.011 3.989 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.139 4.139 24 C -0.099 4.099 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.423 0.577 33 H 0.411 0.589 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.264 0.736 39 H 0.128 0.872 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 -23.873 11.559 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.100 4.100 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.048 3.952 7 N -0.297 5.297 8 C 0.290 3.710 9 O -0.372 6.372 10 C 0.279 3.721 11 O -0.408 6.408 12 N -0.334 5.334 13 C -0.003 4.003 14 C -0.026 4.026 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.160 4.160 24 C -0.117 4.117 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.154 0.846 32 H 0.261 0.739 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.145 0.855 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.589 -23.696 11.339 26.318 hybrid contribution 0.312 1.076 -0.092 1.124 sum -1.277 -22.620 11.247 25.294 Atomic orbital electron populations 1.21764 0.94756 1.01613 1.02403 1.20512 0.96171 0.92537 1.02756 1.19911 1.00416 0.96572 0.93121 1.20916 0.98895 0.94012 0.97745 1.21188 1.00489 0.94402 0.97608 1.17755 0.99386 0.83621 0.94427 1.43199 1.48421 1.09092 1.28947 1.20655 0.81975 0.86725 0.81596 1.90780 1.30546 1.77194 1.38652 1.19748 0.83537 0.85431 0.83422 1.90749 1.33181 1.77054 1.39798 1.46242 1.43049 1.15247 1.28823 1.21977 0.98001 0.78455 1.01905 1.19358 0.96889 0.94940 0.91448 1.20965 1.24753 0.97605 1.13011 0.92190 1.25010 0.94980 0.98889 0.95417 1.69948 1.31141 1.36370 1.15573 0.86541 0.79440 0.83761 0.77601 1.20089 1.21219 1.20094 1.20904 1.02676 0.95960 0.96420 1.20786 0.99258 0.94004 0.97691 0.92423 0.92554 0.92483 0.91125 0.91059 0.85663 0.84625 0.73937 0.75295 0.91714 0.91719 0.95633 0.95631 0.92684 0.85453 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.08 -0.53 6.06 -27.88 -0.17 -0.70 16 3 C -0.10 -0.87 5.14 -104.58 -0.54 -1.41 16 4 C -0.10 -0.97 9.69 -39.61 -0.38 -1.35 16 5 C -0.12 -1.40 8.65 -39.38 -0.34 -1.74 16 6 C 0.14 1.65 6.28 -83.75 -0.53 1.13 16 7 N -0.65 -7.87 5.32 -10.29 -0.05 -7.93 16 8 C 0.51 7.52 7.62 -11.63 -0.09 7.43 16 9 O -0.50 -8.18 14.16 5.47 0.08 -8.10 16 10 C 0.50 8.36 7.89 -11.63 -0.09 8.27 16 11 O -0.53 -9.73 16.48 5.49 0.09 -9.64 16 12 N -0.68 -12.11 5.55 -60.76 -0.34 -12.44 16 13 C 0.12 2.42 5.61 -4.04 -0.02 2.39 16 14 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 15 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 19 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 C -0.14 -1.32 9.97 -39.38 -0.39 -1.71 16 24 C -0.10 -0.84 9.69 -39.61 -0.38 -1.22 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.14 1.78 6.42 -52.48 -0.34 1.45 16 32 H 0.42 4.37 8.30 -40.82 -0.34 4.03 16 33 H 0.41 6.92 7.94 -40.82 -0.32 6.59 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -30.89 347.85 -8.00 -38.88 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.61 Total: 5.46 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -3.12 Total: -2.39 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.34 Total: -45.57 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.74 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.89 -8.00 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273077153.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.894 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds