Wall clock time and date at job start Tue Mar 31 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46847 * 2 1 4 4 C 1.38297 * 119.92389 * 269.72492 * 3 2 1 5 5 C 1.38100 * 120.07240 * 179.76901 * 4 3 2 6 6 C 1.38923 * 119.92663 * 0.52877 * 5 4 3 7 7 N 1.39721 * 120.07998 * 179.70475 * 6 5 4 8 8 C 1.34775 * 119.99755 * 33.34598 * 7 6 5 9 9 O 1.21377 * 120.00116 * 5.28263 * 8 7 6 10 10 C 1.49356 * 119.99997 * 185.28114 * 8 7 6 11 11 O 1.21355 * 120.00112 * 359.97438 * 10 8 7 12 12 N 1.34783 * 119.99933 * 180.02562 * 10 8 7 13 13 C 1.46493 * 119.99672 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47149 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47214 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00202 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99906 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99811 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00081 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47295 * 59.99763 * 19 17 15 21 21 H 1.48498 * 109.47017 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46687 * 299.99654 * 19 17 15 23 23 C 1.38940 * 119.84716 * 359.72530 * 6 5 4 24 24 C 1.38092 * 119.92068 * 359.97438 * 23 6 5 25 25 H 1.09001 * 109.47730 * 59.99948 * 1 2 3 26 26 H 1.09005 * 109.47053 * 299.99883 * 1 2 3 27 27 H 1.09002 * 109.47324 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46945 * 119.99564 * 2 1 3 29 29 H 1.08995 * 109.47230 * 240.00126 * 2 1 3 30 30 H 1.07992 * 119.95815 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.03386 * 180.23472 * 5 4 3 32 32 H 0.96995 * 120.00546 * 213.35396 * 7 6 5 33 33 H 0.96999 * 119.99815 * 0.02562 * 12 10 8 34 34 H 1.09005 * 109.47415 * 299.99680 * 13 12 10 35 35 H 1.08992 * 109.47793 * 59.99575 * 13 12 10 36 36 H 1.08995 * 109.46798 * 300.00103 * 14 13 12 37 37 H 1.09007 * 109.46760 * 59.99645 * 14 13 12 38 38 H 0.96992 * 119.99485 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.03705 * 179.97438 * 23 6 5 40 40 H 1.08004 * 119.95728 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2676 2.0694 -1.1986 5 6 2.7234 3.3730 -1.2022 6 6 2.9559 4.0293 0.0000 7 7 3.4228 5.3461 0.0001 8 6 3.0435 6.1956 -0.9751 9 8 2.2225 5.8470 -1.7982 10 6 3.6334 7.5661 -1.0427 11 8 4.4539 7.9149 -0.2194 12 7 3.2536 8.4159 -2.0176 13 6 3.8327 9.7598 -2.0843 14 6 3.2363 10.5136 -3.2747 15 6 3.8314 11.8964 -3.3429 16 1 4.5623 12.2065 -2.6108 17 6 3.4429 12.7658 -4.3402 18 7 2.5525 12.3883 -5.2315 19 14 4.1811 14.4796 -4.4252 20 1 5.6531 14.3768 -4.5923 21 1 3.6013 15.2116 -5.5798 22 1 3.8753 15.2130 -3.1706 23 6 2.7234 3.3729 1.2023 24 6 2.2617 2.0715 1.1986 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 2.0908 1.5571 -2.1327 31 1 2.9033 3.8802 -2.1386 32 1 4.0201 5.6489 0.7018 33 1 2.5970 8.1374 -2.6750 34 1 3.6082 10.2983 -1.1635 35 1 4.9130 9.6844 -2.2068 36 1 3.4611 9.9751 -4.1953 37 1 2.1557 10.5891 -3.1525 38 1 2.2795 12.9998 -5.9332 39 1 2.9035 3.8800 2.1387 40 1 2.0804 1.5608 2.1328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273077153.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:19 Heat of formation + Delta-G solvation = -81.477201 kcal Electronic energy + Delta-G solvation = -21488.430641 eV Core-core repulsion = 18073.627131 eV Total energy + Delta-G solvation = -3414.803510 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.18070 -40.57616 -39.41030 -37.09918 -36.36565 -34.86596 -33.95711 -31.94357 -31.72749 -29.77156 -27.48706 -25.81656 -24.13400 -24.01040 -22.86474 -21.92387 -21.34071 -19.91339 -18.66148 -18.48496 -17.61378 -17.26482 -16.58826 -16.57697 -16.45099 -16.13952 -15.61718 -15.26538 -14.85721 -14.67487 -14.62996 -14.33855 -14.29859 -14.09140 -13.60360 -13.28474 -12.98259 -12.93892 -12.88023 -12.55820 -12.29065 -12.27727 -11.89612 -11.71529 -11.69044 -11.47545 -11.35335 -10.77074 -10.62146 -10.26379 -9.90780 -9.09654 -8.24197 -6.35532 -0.12722 0.43240 0.55022 1.17359 1.43093 1.45225 1.53326 1.98554 2.38139 2.56391 2.79299 3.10726 3.28317 3.88386 3.90862 4.03891 4.27733 4.35601 4.43178 4.45033 4.45549 4.58104 4.59652 4.76936 4.79231 5.01101 5.04801 5.12532 5.13682 5.22918 5.26818 5.39908 5.42887 5.44135 5.53179 5.70522 5.73988 5.85356 6.02874 6.11275 6.26174 6.60006 6.76522 6.82204 7.33979 8.87594 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.002322 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.435033 B =12054.414356 C =12544.276474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.096 4.096 4 C -0.107 4.107 5 C -0.137 4.137 6 C 0.114 3.886 7 N -0.633 5.633 8 C 0.514 3.486 9 O -0.519 6.519 10 C 0.505 3.495 11 O -0.544 6.544 12 N -0.685 5.685 13 C 0.137 3.863 14 C 0.018 3.982 15 C -0.545 4.545 16 H 0.066 0.934 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.267 1.267 23 C -0.135 4.135 24 C -0.098 4.098 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.115 0.885 32 H 0.431 0.569 33 H 0.415 0.585 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.266 0.734 39 H 0.150 0.850 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 -25.104 13.342 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.096 4.096 4 C -0.125 4.125 5 C -0.157 4.157 6 C 0.021 3.979 7 N -0.280 5.280 8 C 0.296 3.704 9 O -0.394 6.394 10 C 0.286 3.714 11 O -0.422 6.422 12 N -0.336 5.336 13 C 0.015 3.985 14 C -0.019 4.019 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.154 4.154 24 C -0.117 4.117 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.154 0.846 31 H 0.133 0.867 32 H 0.271 0.729 33 H 0.252 0.748 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.167 0.833 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.247 -24.965 13.159 28.248 hybrid contribution 0.185 1.306 -0.598 1.448 sum -1.062 -23.659 12.561 26.807 Atomic orbital electron populations 1.21760 0.94577 1.02388 1.01771 1.20575 0.96179 0.91068 1.04000 1.20259 0.99001 0.97654 0.92714 1.21105 0.98885 0.93425 0.99084 1.21182 1.01929 0.95495 0.97132 1.17966 1.01301 0.83271 0.95324 1.43053 1.47811 1.09090 1.28034 1.20156 0.81948 0.86039 0.82239 1.90781 1.31660 1.77281 1.39708 1.20004 0.82943 0.85997 0.82497 1.90736 1.33750 1.77581 1.40172 1.46062 1.43382 1.14593 1.29597 1.21522 0.97587 0.79454 0.99955 1.19180 0.95827 0.94596 0.92326 1.21422 1.24908 0.98874 1.13174 0.91601 1.25937 0.95354 1.03186 0.95024 1.70071 1.32501 1.37905 1.16279 0.85446 0.78845 0.78611 0.77834 1.19164 1.20909 1.19167 1.21189 1.01590 0.96340 0.96326 1.21182 0.98054 0.93617 0.98822 0.93566 0.92695 0.91053 0.89387 0.90386 0.84583 0.86679 0.72940 0.74831 0.91757 0.91798 0.97395 0.97402 0.92566 0.83260 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 71.98 0.71 -0.80 16 2 C -0.08 -0.82 6.06 29.85 0.18 -0.64 16 3 C -0.10 -1.47 5.14 -19.84 -0.10 -1.57 16 4 C -0.11 -2.04 9.69 22.25 0.22 -1.83 16 5 C -0.14 -3.32 8.65 22.40 0.19 -3.13 16 6 C 0.11 2.59 6.28 38.22 0.24 2.83 16 7 N -0.63 -15.04 5.32 -304.83 -1.62 -16.66 16 8 C 0.51 15.32 7.62 87.24 0.67 15.99 16 9 O -0.52 -17.44 14.16 -3.33 -0.05 -17.49 16 10 C 0.51 16.95 7.89 87.24 0.69 17.63 16 11 O -0.54 -19.74 16.48 -3.26 -0.05 -19.79 16 12 N -0.69 -24.68 5.55 -464.51 -2.58 -27.26 16 13 C 0.14 5.68 5.61 86.38 0.48 6.17 16 14 C 0.02 0.91 5.09 29.85 0.15 1.07 16 15 C -0.55 -29.94 9.11 25.60 0.23 -29.71 16 16 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 17 C 0.00 0.21 5.46 84.66 0.46 0.67 16 18 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 19 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 C -0.13 -2.26 9.97 22.40 0.22 -2.03 16 24 C -0.10 -1.39 9.69 22.25 0.22 -1.17 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.09 0.63 8.08 -2.39 -0.02 0.61 16 29 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 30 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.12 3.20 6.42 -2.91 -0.02 3.18 16 32 H 0.43 8.51 8.30 -92.71 -0.77 7.74 16 33 H 0.42 14.41 7.94 -92.71 -0.74 13.67 16 34 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 35 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -66.17 347.85 2.13 -64.03 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -0.44 Total: 22.94 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 4.56 Total: 3.47 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -3.92 Total: -98.42 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.10 Total: -37.28 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -66.17 2.13 -64.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273077153.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.445 kcal (2) G-P(sol) polarization free energy of solvation -66.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds