Wall clock time and date at job start Tue Mar 31 2020 05:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47337 * 2 1 4 4 C 1.38319 * 119.96151 * 270.27831 * 3 2 1 5 5 C 1.38267 * 120.15432 * 180.23742 * 4 3 2 6 6 C 1.38122 * 120.07421 * 359.47522 * 5 4 3 7 7 C 1.38908 * 119.92231 * 0.26657 * 6 5 4 8 8 N 1.39726 * 120.07271 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99883 * 33.33936 * 8 7 6 10 10 O 1.21373 * 120.00200 * 5.27685 * 9 8 7 11 11 C 1.49354 * 119.99977 * 185.27057 * 9 8 7 12 12 O 1.21363 * 119.99814 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99977 * 179.97438 * 11 9 8 14 14 C 1.46507 * 120.00055 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47449 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.47012 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00582 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99742 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00023 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47352 * 90.00482 * 20 18 16 22 22 H 1.48501 * 109.47039 * 210.00415 * 20 18 16 23 23 H 1.48500 * 109.46995 * 330.00378 * 20 18 16 24 24 C 1.38075 * 119.96703 * 89.99516 * 3 2 1 25 25 H 1.09000 * 109.47055 * 60.00531 * 1 2 3 26 26 H 1.08999 * 109.47508 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47517 * 300.00286 * 1 2 3 28 28 H 1.08995 * 109.47089 * 239.99512 * 2 1 3 29 29 H 1.09000 * 109.47055 * 119.99468 * 2 1 3 30 30 H 1.08005 * 119.92256 * 359.96717 * 4 3 2 31 31 H 1.08001 * 119.96219 * 179.76536 * 5 4 3 32 32 H 1.07997 * 120.03554 * 180.23249 * 6 5 4 33 33 H 0.97000 * 119.99782 * 213.33380 * 8 7 6 34 34 H 0.96998 * 120.00219 * 0.02562 * 13 11 9 35 35 H 1.09009 * 109.46696 * 300.00435 * 14 13 11 36 36 H 1.08998 * 109.47118 * 59.99729 * 14 13 11 37 37 H 1.09004 * 109.46703 * 299.99761 * 15 14 13 38 38 H 1.08997 * 109.46885 * 59.99362 * 15 14 13 39 39 H 0.97005 * 120.00196 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.03310 * 0.04378 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2571 2.0740 -1.1983 5 6 2.7227 3.3759 -1.2030 6 6 2.9546 4.0323 -0.0101 7 6 2.7248 3.3812 1.1952 8 7 2.9589 4.0421 2.4038 9 6 2.7480 5.3699 2.4976 10 8 2.2645 5.9751 1.5632 11 6 3.1090 6.0966 3.7515 12 8 3.5928 5.4915 4.6857 13 7 2.8985 7.4246 3.8451 14 6 3.2532 8.1376 5.0748 15 6 2.9144 9.6215 4.9198 16 6 3.2786 10.3547 6.1850 17 1 3.7092 9.8163 7.0164 18 6 3.0632 11.7132 6.2808 19 7 2.5394 12.3689 5.2683 20 14 3.5154 12.6222 7.8488 21 1 4.9175 13.1024 7.7559 22 1 2.6058 13.7822 8.0283 23 1 3.3823 11.7046 9.0088 24 6 2.2621 2.0710 1.1962 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0727 1.5644 -2.1326 31 1 2.9008 3.8817 -2.1405 32 1 3.3147 5.0505 -0.0145 33 1 3.2732 3.5451 3.1753 34 1 2.5122 7.9082 3.0983 35 1 2.6904 7.7221 5.9108 36 1 4.3208 8.0261 5.2644 37 1 3.4768 10.0371 4.0837 38 1 1.8467 9.7325 4.7304 39 1 2.3875 13.3246 5.3358 40 1 2.0827 1.5617 2.1315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273079396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:21 Heat of formation + Delta-G solvation = -61.755863 kcal Electronic energy + Delta-G solvation = -21551.813097 eV Core-core repulsion = 18137.864769 eV Total energy + Delta-G solvation = -3413.948328 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05362 -39.52448 -38.25281 -35.77140 -34.93353 -33.83556 -32.89216 -30.36738 -29.89591 -29.32350 -25.90097 -24.42761 -24.00679 -22.46479 -21.52999 -20.91539 -19.93543 -18.65344 -17.24732 -16.79166 -16.40651 -16.07392 -15.93397 -15.40173 -14.91010 -14.60868 -14.47388 -14.37450 -13.88008 -13.74396 -13.57965 -13.42159 -13.01624 -12.37203 -12.34774 -12.31164 -11.92712 -11.58205 -11.33300 -11.25544 -11.18717 -11.08841 -10.69267 -10.53032 -10.44107 -9.84533 -9.51184 -9.26790 -8.98943 -8.77712 -8.45101 -8.35011 -6.12617 -4.16502 0.89547 1.15508 1.62798 2.36812 3.24199 3.27481 3.33848 3.37346 3.59155 3.72572 4.37362 4.42326 4.56621 4.61578 4.81421 4.96301 5.01593 5.09985 5.21636 5.24309 5.29088 5.31964 5.56263 5.64088 5.76482 5.88328 6.03411 6.10362 6.12689 6.18679 6.28814 6.37100 6.51113 6.63023 6.76668 6.93618 7.40384 7.53892 7.55579 7.78445 7.84185 8.13430 8.26366 8.89018 9.48569 10.98808 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041908 B = 0.002351 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.973016 B =11905.671733 C =12191.690375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.065 4.065 4 C -0.134 4.134 5 C -0.096 4.096 6 C -0.125 4.125 7 C 0.150 3.850 8 N -0.650 5.650 9 C 0.508 3.492 10 O -0.498 6.498 11 C 0.500 3.500 12 O -0.530 6.530 13 N -0.683 5.683 14 C 0.118 3.882 15 C 0.011 3.989 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.141 4.141 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.423 0.577 34 H 0.411 0.589 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 -23.361 -12.546 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.152 4.152 5 C -0.115 4.115 6 C -0.145 4.145 7 C 0.056 3.944 8 N -0.297 5.297 9 C 0.291 3.709 10 O -0.371 6.371 11 C 0.279 3.721 12 O -0.408 6.408 13 N -0.334 5.334 14 C -0.003 4.003 15 C -0.027 4.027 16 C -0.563 4.563 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.161 4.161 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.261 0.739 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.375 -23.075 -12.526 26.292 hybrid contribution 0.175 0.679 0.837 1.092 sum -1.201 -22.396 -11.689 25.291 Atomic orbital electron populations 1.21756 0.94598 1.01720 1.02448 1.20538 0.96286 0.92350 1.02931 1.19659 0.98313 0.96139 0.92467 1.21019 1.01626 0.95100 0.97476 1.21029 0.98294 0.94471 0.97702 1.21197 1.01233 1.01170 0.90902 1.17730 0.98934 0.92320 0.85411 1.43205 1.65096 1.08246 1.13142 1.20655 0.78575 0.82604 0.89083 1.90780 1.40168 1.66814 1.39340 1.19743 0.81094 0.84069 0.87230 1.90752 1.43947 1.67201 1.38877 1.46243 1.60322 1.06705 1.20081 1.21980 1.00147 0.94835 0.83364 1.19361 0.97854 0.86999 0.98457 1.21001 1.42360 0.93054 0.99841 0.92139 1.25009 0.94934 0.97660 0.96704 1.69959 1.43564 1.08808 1.30697 0.86486 0.78329 0.79317 0.83263 1.20534 1.21142 1.19717 1.20761 1.02665 0.94104 0.98593 0.92456 0.92374 0.92446 0.90889 0.90953 0.86025 0.85543 0.84679 0.73931 0.75294 0.91715 0.91713 0.95633 0.95619 0.92741 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.15 0.37 -0.55 16 2 C -0.08 -0.53 6.06 -27.89 -0.17 -0.70 16 3 C -0.07 -0.57 5.13 -104.65 -0.54 -1.10 16 4 C -0.13 -1.16 9.70 -39.54 -0.38 -1.54 16 5 C -0.10 -0.95 10.04 -39.61 -0.40 -1.34 16 6 C -0.12 -1.50 8.65 -39.38 -0.34 -1.84 16 7 C 0.15 1.76 6.28 -83.75 -0.53 1.23 16 8 N -0.65 -7.90 5.32 -10.30 -0.05 -7.95 16 9 C 0.51 7.52 7.62 -11.63 -0.09 7.44 16 10 O -0.50 -8.17 14.16 5.48 0.08 -8.09 16 11 C 0.50 8.35 7.89 -11.63 -0.09 8.26 16 12 O -0.53 -9.72 16.48 5.49 0.09 -9.63 16 13 N -0.68 -12.09 5.55 -60.76 -0.34 -12.43 16 14 C 0.12 2.42 5.61 -4.04 -0.02 2.39 16 15 C 0.01 0.26 5.09 -27.89 -0.14 0.12 16 16 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.14 -1.37 9.62 -39.38 -0.38 -1.75 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.14 1.78 6.42 -52.49 -0.34 1.44 16 33 H 0.42 4.39 8.30 -40.82 -0.34 4.06 16 34 H 0.41 6.91 7.94 -40.82 -0.32 6.59 16 35 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -30.89 347.85 -8.00 -38.89 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.61 Total: 5.46 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.12 Total: -2.41 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.34 Total: -45.58 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.17 Total: -17.72 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.89 -8.00 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273079396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.869 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds