Wall clock time and date at job start Tue Mar 31 2020 05:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47337 * 2 1 4 4 C 1.38319 * 119.96151 * 270.27831 * 3 2 1 5 5 C 1.38267 * 120.15432 * 180.23742 * 4 3 2 6 6 C 1.38122 * 120.07421 * 359.47522 * 5 4 3 7 7 C 1.38908 * 119.92231 * 0.26657 * 6 5 4 8 8 N 1.39726 * 120.07271 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99883 * 33.33936 * 8 7 6 10 10 O 1.21373 * 120.00200 * 5.27685 * 9 8 7 11 11 C 1.49354 * 119.99977 * 185.27057 * 9 8 7 12 12 O 1.21363 * 119.99814 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99977 * 179.97438 * 11 9 8 14 14 C 1.46507 * 120.00055 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47449 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.47012 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00582 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99742 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00023 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47352 * 90.00482 * 20 18 16 22 22 H 1.48501 * 109.47039 * 210.00415 * 20 18 16 23 23 H 1.48500 * 109.46995 * 330.00378 * 20 18 16 24 24 C 1.38075 * 119.96703 * 89.99516 * 3 2 1 25 25 H 1.09000 * 109.47055 * 60.00531 * 1 2 3 26 26 H 1.08999 * 109.47508 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47517 * 300.00286 * 1 2 3 28 28 H 1.08995 * 109.47089 * 239.99512 * 2 1 3 29 29 H 1.09000 * 109.47055 * 119.99468 * 2 1 3 30 30 H 1.08005 * 119.92256 * 359.96717 * 4 3 2 31 31 H 1.08001 * 119.96219 * 179.76536 * 5 4 3 32 32 H 1.07997 * 120.03554 * 180.23249 * 6 5 4 33 33 H 0.97000 * 119.99782 * 213.33380 * 8 7 6 34 34 H 0.96998 * 120.00219 * 0.02562 * 13 11 9 35 35 H 1.09009 * 109.46696 * 300.00435 * 14 13 11 36 36 H 1.08998 * 109.47118 * 59.99729 * 14 13 11 37 37 H 1.09004 * 109.46703 * 299.99761 * 15 14 13 38 38 H 1.08997 * 109.46885 * 59.99362 * 15 14 13 39 39 H 0.97005 * 120.00196 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.03310 * 0.04378 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2571 2.0740 -1.1983 5 6 2.7227 3.3759 -1.2030 6 6 2.9546 4.0323 -0.0101 7 6 2.7248 3.3812 1.1952 8 7 2.9589 4.0421 2.4038 9 6 2.7480 5.3699 2.4976 10 8 2.2645 5.9751 1.5632 11 6 3.1090 6.0966 3.7515 12 8 3.5928 5.4915 4.6857 13 7 2.8985 7.4246 3.8451 14 6 3.2532 8.1376 5.0748 15 6 2.9144 9.6215 4.9198 16 6 3.2786 10.3547 6.1850 17 1 3.7092 9.8163 7.0164 18 6 3.0632 11.7132 6.2808 19 7 2.5394 12.3689 5.2683 20 14 3.5154 12.6222 7.8488 21 1 4.9175 13.1024 7.7559 22 1 2.6058 13.7822 8.0283 23 1 3.3823 11.7046 9.0088 24 6 2.2621 2.0710 1.1962 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0727 1.5644 -2.1326 31 1 2.9008 3.8817 -2.1405 32 1 3.3147 5.0505 -0.0145 33 1 3.2732 3.5451 3.1753 34 1 2.5122 7.9082 3.0983 35 1 2.6904 7.7221 5.9108 36 1 4.3208 8.0261 5.2644 37 1 3.4768 10.0371 4.0837 38 1 1.8467 9.7325 4.7304 39 1 2.3875 13.3246 5.3358 40 1 2.0827 1.5617 2.1315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273079396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:20 Heat of formation + Delta-G solvation = -81.435475 kcal Electronic energy + Delta-G solvation = -21552.666469 eV Core-core repulsion = 18137.864769 eV Total energy + Delta-G solvation = -3414.801700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.19111 -40.58630 -39.40951 -37.06440 -36.24743 -34.86634 -34.51491 -31.74849 -31.14787 -30.08185 -27.52516 -25.71084 -24.88678 -23.35969 -22.97106 -22.21995 -20.98810 -19.91180 -18.60761 -18.18790 -17.70459 -17.23045 -17.00260 -16.58271 -16.45230 -16.15801 -15.65082 -15.32618 -14.92980 -14.77943 -14.45776 -14.33808 -14.31784 -14.13784 -13.29122 -13.20607 -13.02991 -12.95614 -12.72716 -12.54403 -12.47681 -12.30358 -11.96733 -11.74774 -11.70279 -11.47541 -11.38486 -10.76702 -10.62893 -10.26584 -9.74274 -9.21149 -8.24454 -6.35673 -0.12210 0.39703 0.56563 1.16360 1.43065 1.43311 1.54869 1.98298 2.37771 2.55312 2.79334 3.10611 3.27685 3.79167 3.93309 4.17288 4.29507 4.35507 4.37298 4.43115 4.47929 4.56431 4.57583 4.70373 4.79189 5.00832 5.06634 5.08692 5.13899 5.22235 5.26937 5.40616 5.43064 5.51490 5.53163 5.67127 5.73660 5.84013 6.03075 6.11185 6.25548 6.59097 6.76340 6.81977 7.33933 8.87532 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041908 B = 0.002351 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.973016 B =11905.671733 C =12191.690375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.066 4.066 4 C -0.129 4.129 5 C -0.102 4.102 6 C -0.147 4.147 7 C 0.125 3.875 8 N -0.634 5.634 9 C 0.515 3.485 10 O -0.518 6.518 11 C 0.505 3.495 12 O -0.544 6.544 13 N -0.685 5.685 14 C 0.137 3.863 15 C 0.018 3.982 16 C -0.544 4.544 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.140 4.140 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.116 0.884 33 H 0.431 0.569 34 H 0.415 0.585 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.265 0.735 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 -25.448 -12.633 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.067 4.067 4 C -0.147 4.147 5 C -0.120 4.120 6 C -0.168 4.168 7 C 0.032 3.968 8 N -0.281 5.281 9 C 0.297 3.703 10 O -0.393 6.393 11 C 0.286 3.714 12 O -0.422 6.422 13 N -0.336 5.336 14 C 0.015 3.985 15 C -0.020 4.020 16 C -0.583 4.583 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.568 5.568 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.187 1.187 24 C -0.160 4.160 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.134 0.866 33 H 0.270 0.730 34 H 0.252 0.748 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.346 -25.215 -12.623 28.230 hybrid contribution 0.152 1.206 0.766 1.437 sum -1.194 -24.009 -11.857 26.803 Atomic orbital electron populations 1.21756 0.94468 1.02485 1.01796 1.20598 0.96234 0.90780 1.04244 1.20030 0.97283 0.97312 0.92027 1.21377 1.00087 0.94549 0.98729 1.21269 0.98036 0.95156 0.97581 1.21213 1.02649 1.00748 0.92140 1.17931 1.00814 0.93277 0.84806 1.43064 1.63979 1.07175 1.13861 1.20154 0.78871 0.83401 0.87877 1.90780 1.41529 1.67413 1.39570 1.19994 0.80197 0.83502 0.87747 1.90739 1.44442 1.67404 1.39654 1.46061 1.60846 1.07282 1.19407 1.21526 0.99965 0.92585 0.84434 1.19182 0.96302 0.89447 0.97025 1.21446 1.42216 0.93749 1.00852 0.91618 1.25932 0.94788 0.98686 1.00092 1.70078 1.44682 1.09199 1.32812 0.85395 0.78163 0.77951 0.79233 1.19791 1.20802 1.18725 1.20999 1.01855 0.93192 0.99981 0.92766 0.90948 0.93467 0.89304 0.90003 0.83378 0.83918 0.86646 0.72975 0.74818 0.91778 0.91778 0.97378 0.97379 0.92571 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 71.98 0.71 -0.74 16 2 C -0.08 -0.78 6.06 29.85 0.18 -0.60 16 3 C -0.07 -0.99 5.13 -19.88 -0.10 -1.09 16 4 C -0.13 -1.93 9.70 22.30 0.22 -1.72 16 5 C -0.10 -1.89 10.04 22.25 0.22 -1.66 16 6 C -0.15 -3.55 8.65 22.40 0.19 -3.35 16 7 C 0.12 2.86 6.28 38.21 0.24 3.10 16 8 N -0.63 -15.21 5.32 -304.84 -1.62 -16.83 16 9 C 0.52 15.36 7.62 87.24 0.66 16.03 16 10 O -0.52 -17.36 14.16 -3.32 -0.05 -17.41 16 11 C 0.51 16.95 7.89 87.24 0.69 17.63 16 12 O -0.54 -19.75 16.48 -3.29 -0.05 -19.81 16 13 N -0.68 -24.62 5.55 -464.49 -2.58 -27.20 16 14 C 0.14 5.68 5.61 86.38 0.48 6.16 16 15 C 0.02 0.90 5.09 29.85 0.15 1.05 16 16 C -0.54 -29.86 9.11 25.60 0.23 -29.63 16 17 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 18 C 0.00 0.21 5.46 84.66 0.46 0.67 16 19 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 20 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 C -0.14 -2.49 9.62 22.40 0.22 -2.27 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 29 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 30 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.12 3.18 6.42 -2.91 -0.02 3.16 16 33 H 0.43 8.65 8.30 -92.71 -0.77 7.88 16 34 H 0.42 14.37 7.94 -92.71 -0.74 13.64 16 35 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 36 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 40 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -65.99 347.85 2.13 -63.86 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.44 Total: 22.99 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 4.56 Total: 3.59 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -3.92 Total: -98.49 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.10 Total: -37.22 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -65.99 2.13 -63.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273079396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.578 kcal (2) G-P(sol) polarization free energy of solvation -65.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds