Wall clock time and date at job start Tue Mar 31 2020 06:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47213 * 2 1 4 4 C 1.50700 * 109.47500 * 180.02562 * 3 2 1 5 5 O 1.21291 * 119.99696 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00070 * 180.02562 * 4 3 2 7 7 C 1.39923 * 119.99607 * 174.43891 * 6 4 3 8 8 C 1.39007 * 120.03003 * 335.15256 * 7 6 4 9 9 C 1.38183 * 120.09408 * 179.69782 * 8 7 6 10 10 C 1.38125 * 120.15060 * 0.60213 * 9 8 7 11 11 C 1.39075 * 120.05560 * 359.67472 * 10 9 8 12 12 N 1.39525 * 120.04767 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00031 * 34.88954 * 12 11 10 14 14 O 1.21745 * 119.99562 * 355.23948 * 13 12 11 15 15 C 1.46158 * 120.00042 * 175.24498 * 13 12 11 16 16 H 1.07994 * 120.00400 * 5.03767 * 15 13 12 17 17 C 1.40123 * 119.99630 * 185.04224 * 15 13 12 18 18 N 1.30637 * 120.00530 * 5.03791 * 17 15 13 19 19 Si 1.86806 * 119.99819 * 185.04070 * 17 15 13 20 20 H 1.48502 * 109.47149 * 94.99663 * 19 17 15 21 21 H 1.48498 * 109.47190 * 214.99823 * 19 17 15 22 22 H 1.48506 * 109.47035 * 334.99850 * 19 17 15 23 23 C 1.38672 * 120.02427 * 155.43238 * 7 6 4 24 24 C 1.50699 * 120.07475 * 0.02562 * 23 7 6 25 25 H 1.09002 * 109.47772 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47359 * 299.99941 * 1 2 3 27 27 H 1.09007 * 109.47323 * 59.99801 * 1 2 3 28 28 H 1.09002 * 109.46927 * 240.00700 * 2 1 3 29 29 H 1.08998 * 109.47312 * 120.00465 * 2 1 3 30 30 H 1.08998 * 109.47361 * 300.00435 * 3 2 1 31 31 H 1.09009 * 109.46844 * 60.00190 * 3 2 1 32 32 H 0.96995 * 120.00453 * 354.43915 * 6 4 3 33 33 H 1.08004 * 119.94926 * 0.02562 * 8 7 6 34 34 H 1.07998 * 119.92503 * 180.29688 * 9 8 7 35 35 H 1.08007 * 119.97450 * 179.69896 * 10 9 8 36 36 H 0.96996 * 120.00089 * 214.88647 * 12 11 10 37 37 H 0.97002 * 120.00198 * 179.97438 * 18 17 15 38 38 H 1.08990 * 109.47332 * 90.00637 * 24 23 7 39 39 H 1.09003 * 109.46821 * 210.00356 * 24 23 7 40 40 H 1.09003 * 109.47401 * 329.99967 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 5.6151 2.6125 0.1166 8 6 6.2639 1.5473 0.7303 9 6 7.6413 1.5457 0.8409 10 6 8.3776 2.6077 0.3534 11 6 7.7346 3.6794 -0.2566 12 7 8.4785 4.7524 -0.7485 13 6 9.6952 4.5382 -1.2874 14 8 10.1821 3.4225 -1.2668 15 6 10.4300 5.6452 -1.8963 16 1 10.0359 6.6492 -1.8428 17 6 11.6459 5.4037 -2.5495 18 7 12.0744 4.1788 -2.7005 19 14 12.6544 6.8333 -3.2043 20 1 13.6777 7.2185 -2.1994 21 1 13.3266 6.4285 -4.4651 22 1 11.7607 7.9894 -3.4689 23 6 6.3505 3.6807 -0.3746 24 6 5.6496 4.8402 -1.0343 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.7392 3.4479 -0.0809 33 1 5.6909 0.7172 1.1166 34 1 8.1429 0.7144 1.3139 35 1 9.4537 2.6058 0.4457 36 1 8.1201 5.6526 -0.7028 37 1 12.9159 4.0117 -3.1530 38 1 5.4040 5.5911 -0.2834 39 1 6.3041 5.2797 -1.7870 40 1 4.7339 4.4886 -1.5097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274610484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:02 Heat of formation + Delta-G solvation = -60.640139 kcal Electronic energy + Delta-G solvation = -22434.300214 eV Core-core repulsion = 19020.400267 eV Total energy + Delta-G solvation = -3413.899947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.53110 -38.97486 -37.03594 -34.77184 -34.51016 -33.44332 -32.58272 -31.27450 -29.17001 -27.73066 -26.55249 -25.88416 -23.16121 -21.80015 -20.87195 -20.50241 -19.45402 -17.79383 -17.30181 -16.80352 -16.12262 -15.61782 -15.12780 -14.85040 -14.70068 -14.17955 -14.02393 -13.94140 -13.46699 -13.33727 -12.89608 -12.66882 -12.46329 -12.36749 -12.13941 -11.92056 -11.64681 -11.45201 -11.34112 -11.14490 -11.10339 -10.99105 -10.73396 -10.62727 -10.34794 -10.23348 -9.60100 -9.12490 -8.82932 -7.83131 -7.57224 -6.97849 -6.35976 -4.81537 1.78036 2.05489 2.74243 3.06638 3.08354 3.14062 3.17267 3.98975 4.28981 4.50136 4.54339 4.61902 4.69329 4.73674 5.13618 5.20347 5.29497 5.32441 5.38176 5.45489 5.61247 5.71120 5.76756 5.83514 5.87356 5.88701 6.04566 6.09175 6.16185 6.29821 6.41809 6.71161 6.83159 7.14601 7.25783 7.28354 7.45216 7.56775 7.74003 8.06502 8.16233 8.20093 8.84954 9.22637 10.39057 10.56727 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036785 B = 0.003063 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.994663 B = 9138.041880 C = 9506.707660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.506 3.494 5 O -0.518 6.518 6 N -0.667 5.667 7 C 0.155 3.845 8 C -0.169 4.169 9 C -0.090 4.090 10 C -0.141 4.141 11 C 0.208 3.792 12 N -0.697 5.697 13 C 0.545 3.455 14 O -0.559 6.559 15 C -0.540 4.540 16 H 0.072 0.928 17 C 0.087 3.913 18 N -0.760 5.760 19 Si 0.912 3.088 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.174 4.174 24 C -0.105 4.105 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.406 0.594 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.143 0.857 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.437 -0.067 5.356 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.294 3.706 5 O -0.393 6.393 6 N -0.311 5.311 7 C 0.061 3.939 8 C -0.190 4.190 9 C -0.109 4.109 10 C -0.162 4.162 11 C 0.109 3.891 12 N -0.340 5.340 13 C 0.351 3.649 14 O -0.441 6.441 15 C -0.576 4.576 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.388 5.388 19 Si 0.737 3.263 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.180 4.180 24 C -0.162 4.162 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.242 0.758 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.225 0.775 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.481 -1.715 5.233 19.284 hybrid contribution 0.099 1.612 -0.478 1.684 sum -18.382 -0.103 4.755 18.988 Atomic orbital electron populations 1.21792 0.95466 1.01992 1.01736 1.21289 0.95231 0.94561 1.03783 1.21735 0.91263 1.00476 1.04476 1.20887 0.90404 0.83446 0.75906 1.90697 1.69982 1.31297 1.47322 1.43520 1.05863 1.09450 1.72270 1.17205 0.81459 0.96020 0.99184 1.21070 0.94724 0.99494 1.03697 1.20888 0.93142 0.97824 0.99072 1.21512 1.01817 0.94200 0.98679 1.17508 0.88808 0.90534 0.92262 1.44081 1.20116 1.07204 1.62612 1.18384 0.78339 0.90114 0.78023 1.90621 1.67193 1.25280 1.60960 1.20832 1.05851 0.93699 1.37202 0.90999 1.25736 0.97221 0.96245 0.94215 1.69972 1.18325 1.20233 1.30220 0.86276 0.79955 0.81472 0.78626 1.19613 1.20310 1.18779 1.19253 0.92800 0.98654 1.07278 1.20542 0.99869 0.95794 1.00024 0.92381 0.92700 0.92685 0.91085 0.91115 0.88827 0.88724 0.75826 0.84808 0.86405 0.83928 0.77456 0.91698 0.92013 0.90932 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.15 0.37 -0.58 16 2 C -0.11 -0.94 5.22 -26.74 -0.14 -1.08 16 3 C -0.14 -1.10 5.70 -27.88 -0.16 -1.26 16 4 C 0.51 6.41 7.63 -10.99 -0.08 6.33 16 5 O -0.52 -8.70 13.14 5.55 0.07 -8.63 16 6 N -0.67 -8.38 4.98 -9.88 -0.05 -8.43 16 7 C 0.16 2.62 6.41 -83.72 -0.54 2.08 16 8 C -0.17 -3.09 8.72 -39.32 -0.34 -3.43 16 9 C -0.09 -1.73 10.03 -39.64 -0.40 -2.13 16 10 C -0.14 -3.12 8.69 -39.31 -0.34 -3.46 16 11 C 0.21 4.44 6.28 -83.80 -0.53 3.91 16 12 N -0.70 -15.56 4.73 -11.22 -0.05 -15.62 16 13 C 0.54 15.05 7.56 -13.08 -0.10 14.95 16 14 O -0.56 -17.45 12.47 5.15 0.06 -17.39 16 15 C -0.54 -14.63 9.53 -35.70 -0.34 -14.97 16 16 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 17 C 0.09 2.35 5.49 -17.35 -0.10 2.25 16 18 N -0.76 -22.10 11.87 55.55 0.66 -21.44 16 19 Si 0.91 19.44 29.56 -169.99 -5.03 14.42 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.17 -3.07 5.92 -104.21 -0.62 -3.69 16 24 C -0.11 -1.43 8.91 36.01 0.32 -1.11 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 28 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.41 3.66 7.39 -40.82 -0.30 3.36 16 33 H 0.13 2.42 5.78 -52.48 -0.30 2.11 16 34 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 35 H 0.14 3.56 6.19 -52.48 -0.32 3.23 16 36 H 0.39 7.45 7.83 -40.82 -0.32 7.13 16 37 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.08 7.18 -51.93 -0.37 0.71 16 40 H 0.06 0.64 6.98 -51.93 -0.36 0.28 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -34.97 334.68 -7.61 -42.58 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.33 Total: 11.65 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.99 Total: -2.18 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.56 Total: -45.49 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: 0.14 Total: -26.02 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.97 -7.61 -42.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274610484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.057 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds