Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47213 * 2 1 4 4 C 1.50700 * 109.47500 * 180.02562 * 3 2 1 5 5 O 1.21291 * 119.99696 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00070 * 180.02562 * 4 3 2 7 7 C 1.39923 * 119.99607 * 174.43891 * 6 4 3 8 8 C 1.39007 * 120.03003 * 335.15256 * 7 6 4 9 9 C 1.38183 * 120.09408 * 179.69782 * 8 7 6 10 10 C 1.38125 * 120.15060 * 0.60213 * 9 8 7 11 11 C 1.39075 * 120.05560 * 359.67472 * 10 9 8 12 12 N 1.39525 * 120.04767 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00031 * 34.88954 * 12 11 10 14 14 O 1.21745 * 119.99562 * 355.23948 * 13 12 11 15 15 C 1.46158 * 120.00042 * 175.24498 * 13 12 11 16 16 H 1.07994 * 120.00400 * 5.03767 * 15 13 12 17 17 C 1.40123 * 119.99630 * 185.04224 * 15 13 12 18 18 N 1.30637 * 120.00530 * 5.03791 * 17 15 13 19 19 Si 1.86806 * 119.99819 * 185.04070 * 17 15 13 20 20 H 1.48502 * 109.47149 * 94.99663 * 19 17 15 21 21 H 1.48498 * 109.47190 * 214.99823 * 19 17 15 22 22 H 1.48506 * 109.47035 * 334.99850 * 19 17 15 23 23 C 1.38672 * 120.02427 * 155.43238 * 7 6 4 24 24 C 1.50699 * 120.07475 * 0.02562 * 23 7 6 25 25 H 1.09002 * 109.47772 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47359 * 299.99941 * 1 2 3 27 27 H 1.09007 * 109.47323 * 59.99801 * 1 2 3 28 28 H 1.09002 * 109.46927 * 240.00700 * 2 1 3 29 29 H 1.08998 * 109.47312 * 120.00465 * 2 1 3 30 30 H 1.08998 * 109.47361 * 300.00435 * 3 2 1 31 31 H 1.09009 * 109.46844 * 60.00190 * 3 2 1 32 32 H 0.96995 * 120.00453 * 354.43915 * 6 4 3 33 33 H 1.08004 * 119.94926 * 0.02562 * 8 7 6 34 34 H 1.07998 * 119.92503 * 180.29688 * 9 8 7 35 35 H 1.08007 * 119.97450 * 179.69896 * 10 9 8 36 36 H 0.96996 * 120.00089 * 214.88647 * 12 11 10 37 37 H 0.97002 * 120.00198 * 179.97438 * 18 17 15 38 38 H 1.08990 * 109.47332 * 90.00637 * 24 23 7 39 39 H 1.09003 * 109.46821 * 210.00356 * 24 23 7 40 40 H 1.09003 * 109.47401 * 329.99967 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 5.6151 2.6125 0.1166 8 6 6.2639 1.5473 0.7303 9 6 7.6413 1.5457 0.8409 10 6 8.3776 2.6077 0.3534 11 6 7.7346 3.6794 -0.2566 12 7 8.4785 4.7524 -0.7485 13 6 9.6952 4.5382 -1.2874 14 8 10.1821 3.4225 -1.2668 15 6 10.4300 5.6452 -1.8963 16 1 10.0359 6.6492 -1.8428 17 6 11.6459 5.4037 -2.5495 18 7 12.0744 4.1788 -2.7005 19 14 12.6544 6.8333 -3.2043 20 1 13.6777 7.2185 -2.1994 21 1 13.3266 6.4285 -4.4651 22 1 11.7607 7.9894 -3.4689 23 6 6.3505 3.6807 -0.3746 24 6 5.6496 4.8402 -1.0343 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.7392 3.4479 -0.0809 33 1 5.6909 0.7172 1.1166 34 1 8.1429 0.7144 1.3139 35 1 9.4537 2.6058 0.4457 36 1 8.1201 5.6526 -0.7028 37 1 12.9159 4.0117 -3.1530 38 1 5.4040 5.5911 -0.2834 39 1 6.3041 5.2797 -1.7870 40 1 4.7339 4.4886 -1.5097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274610484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = -84.846510 kcal Electronic energy + Delta-G solvation = -22435.349881 eV Core-core repulsion = 19020.400267 eV Total energy + Delta-G solvation = -3414.949614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.77969 -40.51311 -38.76108 -36.10452 -35.35799 -35.07897 -34.61268 -32.71888 -30.52513 -28.91039 -28.09364 -27.42313 -24.46017 -22.99746 -22.30015 -21.71694 -20.94165 -19.53170 -18.68616 -18.12695 -17.58537 -17.02676 -16.64174 -16.20464 -16.04913 -15.74291 -15.25867 -15.20825 -14.76668 -14.55448 -14.31267 -14.18542 -13.97084 -13.44406 -13.21643 -13.08323 -12.89633 -12.80404 -12.66910 -12.63268 -12.50178 -12.18423 -12.01928 -12.01239 -11.67212 -11.58155 -11.01959 -10.82623 -10.60228 -9.87183 -9.05994 -8.66264 -8.38135 -6.93972 0.35709 0.49442 1.39491 1.40915 1.57216 1.64059 2.02361 2.21761 2.38166 2.89071 2.99196 3.56951 3.67143 3.95359 4.02029 4.11385 4.14802 4.25898 4.52897 4.61272 4.64182 4.70402 4.73355 4.77929 4.81541 4.83840 4.94262 5.23552 5.25896 5.26367 5.30292 5.32030 5.38364 5.49586 5.54201 5.66487 5.81346 5.96108 6.16843 6.40061 6.49146 6.77766 7.16306 7.34905 8.35892 8.56702 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036785 B = 0.003063 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.994663 B = 9138.041880 C = 9506.707660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.127 4.127 4 C 0.502 3.498 5 O -0.564 6.564 6 N -0.653 5.653 7 C 0.164 3.836 8 C -0.171 4.171 9 C -0.094 4.094 10 C -0.172 4.172 11 C 0.177 3.823 12 N -0.685 5.685 13 C 0.530 3.470 14 O -0.608 6.608 15 C -0.564 4.564 16 H 0.096 0.904 17 C 0.028 3.972 18 N -0.816 5.816 19 Si 1.002 2.998 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.244 1.244 23 C -0.163 4.163 24 C -0.104 4.104 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.428 0.572 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.408 0.592 37 H 0.277 0.723 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.702 2.466 4.983 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.167 4.167 4 C 0.292 3.708 5 O -0.442 6.442 6 N -0.299 5.299 7 C 0.068 3.932 8 C -0.192 4.192 9 C -0.113 4.113 10 C -0.194 4.194 11 C 0.079 3.921 12 N -0.330 5.330 13 C 0.336 3.664 14 O -0.494 6.494 15 C -0.600 4.600 16 H 0.114 0.886 17 C -0.188 4.188 18 N -0.445 5.445 19 Si 0.821 3.179 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.166 1.166 23 C -0.169 4.169 24 C -0.161 4.161 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.267 0.733 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.120 0.880 36 H 0.244 0.756 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.848 0.866 4.884 22.404 hybrid contribution 0.956 0.709 -0.291 1.225 sum -20.892 1.575 4.594 21.449 Atomic orbital electron populations 1.21748 0.93363 1.02372 1.02925 1.21288 0.96966 0.94813 1.02048 1.21808 0.86911 1.00576 1.07363 1.21886 0.92365 0.82424 0.74094 1.90688 1.71292 1.32990 1.49226 1.43499 1.03839 1.10897 1.71695 1.17271 0.83758 0.94791 0.97356 1.21225 0.94123 1.00201 1.03644 1.20990 0.93896 0.97441 0.99020 1.21290 1.00126 0.96410 1.01539 1.17744 0.90488 0.90257 0.93599 1.43581 1.18898 1.08400 1.62119 1.18788 0.79685 0.89751 0.78127 1.90589 1.68889 1.27054 1.62864 1.21385 1.06661 0.94571 1.37333 0.88625 1.27041 0.98341 0.99518 0.93868 1.70145 1.19256 1.23487 1.31629 0.84934 0.77896 0.77287 0.77763 1.18898 1.19810 1.16638 1.19559 0.91260 1.00091 1.05946 1.20664 1.00181 0.94813 1.00414 0.92561 0.91359 0.91554 0.93149 0.92779 0.85835 0.85522 0.73257 0.84343 0.85184 0.88038 0.75611 0.91266 0.88646 0.92258 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.11 -1.67 5.22 30.59 0.16 -1.51 16 3 C -0.13 -1.50 5.70 29.85 0.17 -1.33 16 4 C 0.50 11.39 7.63 87.66 0.67 12.06 16 5 O -0.56 -18.48 13.14 -3.06 -0.04 -18.52 16 6 N -0.65 -14.23 4.98 -303.55 -1.51 -15.75 16 7 C 0.16 5.27 6.41 38.14 0.24 5.51 16 8 C -0.17 -6.26 8.72 22.44 0.20 -6.06 16 9 C -0.09 -3.82 10.03 22.23 0.22 -3.60 16 10 C -0.17 -8.15 8.69 22.44 0.20 -7.96 16 11 C 0.18 7.77 6.28 38.28 0.24 8.01 16 12 N -0.69 -31.48 4.73 -307.60 -1.45 -32.94 16 13 C 0.53 30.60 7.56 86.30 0.65 31.25 16 14 O -0.61 -40.60 12.47 -4.49 -0.06 -40.65 16 15 C -0.56 -31.09 9.53 24.79 0.24 -30.85 16 16 H 0.10 4.62 7.85 -2.91 -0.02 4.60 16 17 C 0.03 1.55 5.49 85.33 0.47 2.02 16 18 N -0.82 -49.45 11.87 21.85 0.26 -49.19 16 19 Si 1.00 39.83 29.56 68.60 2.03 41.86 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.24 -8.80 7.11 99.48 0.71 -8.09 16 23 C -0.16 -5.54 5.92 -19.60 -0.12 -5.65 16 24 C -0.10 -2.47 8.91 71.24 0.63 -1.84 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 29 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 30 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.43 5.58 7.39 -92.71 -0.68 4.90 16 33 H 0.14 4.99 5.78 -2.91 -0.02 4.98 16 34 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 35 H 0.10 5.61 6.19 -2.91 -0.02 5.59 16 36 H 0.41 15.47 7.83 -92.71 -0.73 14.75 16 37 H 0.28 15.21 8.29 -92.71 -0.77 14.44 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 1.62 7.18 -2.39 -0.02 1.60 16 40 H 0.08 1.54 6.98 -2.39 -0.02 1.53 16 Total: -1.00 -83.08 334.68 3.58 -79.49 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.33 Total: 36.30 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 4.69 Total: -0.61 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -2.71 Total: -97.87 kcal Atomic # 8 Polarization: -59.08 SS G_CDS: -0.10 Total: -59.17 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -83.08 3.58 -79.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274610484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.352 kcal (2) G-P(sol) polarization free energy of solvation -83.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds