Wall clock time and date at job start Tue Mar 31 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46882 * 2 1 4 4 N 1.46499 * 109.46827 * 179.97438 * 3 2 1 5 5 C 1.34778 * 119.99999 * 180.02562 * 4 3 2 6 6 O 1.21558 * 119.99510 * 0.02562 * 5 4 3 7 7 C 1.47844 * 120.00225 * 179.97438 * 5 4 3 8 8 C 1.39596 * 120.14198 * 359.72990 * 7 5 4 9 9 C 1.37935 * 119.85015 * 179.74474 * 8 7 5 10 10 C 1.38383 * 120.14664 * 0.52987 * 9 8 7 11 11 C 1.38339 * 120.28944 * 359.74060 * 10 9 8 12 12 C 1.50698 * 119.92680 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46950 * 269.97959 * 12 11 10 14 14 C 1.34778 * 119.99713 * 180.02562 * 13 12 11 15 15 O 1.21683 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.46378 * 120.00038 * 179.97438 * 14 13 12 17 17 H 1.08004 * 119.99757 * 353.94352 * 16 14 13 18 18 C 1.40046 * 120.00232 * 173.93543 * 16 14 13 19 19 N 1.30665 * 119.99900 * 6.15268 * 18 16 14 20 20 Si 1.86800 * 119.99898 * 186.14769 * 18 16 14 21 21 H 1.48509 * 109.46795 * 94.98838 * 20 18 16 22 22 H 1.48502 * 109.47100 * 214.98461 * 20 18 16 23 23 H 1.48498 * 109.47329 * 334.98889 * 20 18 16 24 24 C 1.37977 * 120.14755 * 359.97438 * 11 10 9 25 25 H 1.09006 * 109.47048 * 60.00307 * 1 2 3 26 26 H 1.08996 * 109.47018 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47640 * 300.00004 * 1 2 3 28 28 H 1.08995 * 109.47397 * 240.00453 * 2 1 3 29 29 H 1.08996 * 109.47053 * 119.99690 * 2 1 3 30 30 H 1.08996 * 109.47024 * 299.99708 * 3 2 1 31 31 H 1.08995 * 109.46734 * 60.00047 * 3 2 1 32 32 H 0.97005 * 120.00363 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.07541 * 359.97438 * 8 7 5 34 34 H 1.07996 * 119.92615 * 180.24873 * 9 8 7 35 35 H 1.07996 * 119.85397 * 179.76652 * 10 9 8 36 36 H 1.09000 * 109.47453 * 29.97598 * 12 11 10 37 37 H 1.08998 * 109.47364 * 149.97959 * 12 11 10 38 38 H 0.96995 * 120.00052 * 359.97438 * 13 12 11 39 39 H 0.97000 * 119.99997 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.07446 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1789 2.6098 0.0012 6 8 3.5710 3.6625 0.0018 7 6 5.6573 2.6098 0.0024 8 6 6.3583 1.4027 0.0086 9 6 7.7376 1.4097 0.0044 10 6 8.4265 2.6099 0.0051 11 6 7.7378 3.8097 0.0046 12 6 8.4962 5.1119 0.0049 13 7 8.7410 5.5342 1.3862 14 6 9.4072 6.6796 1.6326 15 8 9.8059 7.3627 0.7078 16 6 9.6513 7.1019 3.0127 17 1 9.2146 6.5496 3.8317 18 6 10.4511 8.2221 3.2712 19 7 10.8804 8.9605 2.2824 20 14 10.9040 8.6606 5.0296 21 1 12.2301 8.0789 5.3589 22 1 10.9621 10.1376 5.1722 23 1 9.8799 8.1138 5.9556 24 6 6.3581 3.8167 0.0030 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.9900 0.6025 0.0006 33 1 5.8219 0.4654 0.0129 34 1 8.2812 0.4765 0.0051 35 1 9.5065 2.6099 0.0056 36 1 9.4486 4.9778 -0.5082 37 1 7.9105 5.8736 -0.5096 38 1 8.4228 4.9900 2.1233 39 1 11.4341 9.7366 2.4615 40 1 5.8216 4.7540 0.0022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274729981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:15 Heat of formation + Delta-G solvation = -65.676351 kcal Electronic energy + Delta-G solvation = -21599.886954 eV Core-core repulsion = 18185.768621 eV Total energy + Delta-G solvation = -3414.118333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.32855 -38.69858 -37.08166 -36.06377 -33.90732 -32.94388 -32.34095 -31.11504 -30.67034 -27.03568 -26.58225 -24.86128 -23.56647 -22.05117 -21.73326 -20.23507 -19.64140 -17.96256 -17.02666 -16.47392 -16.09670 -16.04474 -15.33225 -14.99576 -14.84711 -14.69122 -14.25368 -13.99242 -13.80078 -13.35078 -13.06842 -12.94867 -12.73192 -12.46611 -12.41166 -12.12553 -11.66504 -11.57662 -11.32941 -11.31842 -11.17156 -10.95883 -10.84438 -10.42875 -10.20548 -10.03449 -9.37565 -8.96547 -8.92749 -8.83241 -7.58491 -7.51291 -6.17780 -4.61829 0.80953 1.30644 2.79552 2.91722 3.15584 3.22745 3.26712 3.79765 4.14187 4.37746 4.53466 4.55918 4.60162 4.68136 4.79248 4.84631 5.04155 5.18113 5.19999 5.20329 5.31310 5.36511 5.42382 5.56937 5.67706 5.68416 5.77593 5.80532 5.90905 6.14697 6.17786 6.26968 6.31717 6.40298 6.74324 6.86513 7.26436 7.45803 7.93635 8.05319 8.08156 8.34797 9.04321 9.53728 10.60933 10.79155 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.002715 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.529964 B =10310.432454 C =10815.953078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.732 5.732 5 C 0.560 3.440 6 O -0.533 6.533 7 C -0.143 4.143 8 C -0.092 4.092 9 C -0.130 4.130 10 C -0.076 4.076 11 C -0.093 4.093 12 C 0.168 3.832 13 N -0.763 5.763 14 C 0.555 3.445 15 O -0.581 6.581 16 C -0.545 4.545 17 H 0.068 0.932 18 C 0.087 3.913 19 N -0.768 5.768 20 Si 0.908 3.092 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.042 4.042 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.399 0.601 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.381 0.619 39 H 0.268 0.732 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.999 -21.609 -3.842 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.385 5.385 5 C 0.348 3.652 6 O -0.410 6.410 7 C -0.146 4.146 8 C -0.111 4.111 9 C -0.148 4.148 10 C -0.095 4.095 11 C -0.093 4.093 12 C 0.044 3.956 13 N -0.419 5.419 14 C 0.359 3.641 15 O -0.463 6.463 16 C -0.582 4.582 17 H 0.086 0.914 18 C -0.132 4.132 19 N -0.396 5.396 20 Si 0.733 3.267 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.062 4.062 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.213 0.787 39 H 0.079 0.921 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.063 -20.148 -4.611 24.999 hybrid contribution 0.305 -0.589 1.211 1.381 sum -13.758 -20.738 -3.400 25.117 Atomic orbital electron populations 1.21678 0.94460 1.02171 1.02468 1.21744 0.97101 0.95820 1.02743 1.21421 0.79330 0.97159 1.02697 1.45914 1.07359 1.08649 1.76559 1.18362 0.87388 0.83565 0.75888 1.90797 1.69943 1.31151 1.49124 1.19820 0.92240 0.94601 1.07921 1.21175 0.94674 0.96398 0.98814 1.21054 0.93820 0.98264 1.01650 1.21398 1.00642 0.91677 0.95770 1.20246 0.93451 0.96091 0.99552 1.19835 0.97768 0.90221 0.87783 1.46210 1.64038 1.27332 1.04303 1.18253 0.76895 0.78335 0.90609 1.90600 1.54666 1.54527 1.46551 1.20874 1.33171 1.13117 0.90998 0.91368 1.25709 0.94368 0.95001 0.98168 1.70026 1.25612 1.12001 1.32002 0.86354 0.79342 0.78001 0.83023 1.19820 1.20450 1.18887 1.21270 0.93414 0.97768 0.93700 0.92290 0.92163 0.92247 0.91286 0.91244 0.91352 0.91307 0.76552 0.86122 0.85447 0.85199 0.92176 0.92200 0.78734 0.92111 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.14 -0.71 6.05 -26.73 -0.16 -0.87 16 3 C 0.12 0.97 5.67 -4.04 -0.02 0.94 16 4 N -0.73 -6.75 5.51 -61.25 -0.34 -7.09 16 5 C 0.56 7.50 7.77 -12.33 -0.10 7.41 16 6 O -0.53 -9.29 16.35 5.31 0.09 -9.21 16 7 C -0.14 -1.85 5.87 -104.97 -0.62 -2.47 16 8 C -0.09 -0.91 9.54 -39.19 -0.37 -1.28 16 9 C -0.13 -1.32 10.03 -39.64 -0.40 -1.72 16 10 C -0.08 -0.97 9.69 -39.49 -0.38 -1.35 16 11 C -0.09 -1.42 5.24 -104.68 -0.55 -1.97 16 12 C 0.17 3.28 5.79 -5.19 -0.03 3.25 16 13 N -0.76 -17.36 5.54 -62.90 -0.35 -17.70 16 14 C 0.55 16.01 7.74 -12.99 -0.10 15.91 16 15 O -0.58 -19.04 15.04 5.20 0.08 -18.96 16 16 C -0.54 -15.60 9.53 -35.63 -0.34 -15.94 16 17 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 18 C 0.09 2.47 5.49 -17.37 -0.10 2.37 16 19 N -0.77 -23.29 11.85 55.55 0.66 -22.63 16 20 Si 0.91 20.39 29.56 -169.99 -5.03 15.36 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 24 C -0.04 -0.64 9.24 -39.19 -0.36 -1.00 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 2.50 6.51 -40.82 -0.27 2.23 16 33 H 0.12 0.76 6.41 -52.49 -0.34 0.42 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.06 1.19 8.08 -51.93 -0.42 0.78 16 37 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 38 H 0.38 7.81 8.44 -40.82 -0.34 7.46 16 39 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 40 H 0.14 2.29 7.65 -52.49 -0.40 1.89 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -36.97 347.21 -8.35 -45.33 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.54 Total: 6.74 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -3.16 Total: 2.93 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.03 Total: -47.42 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: 0.17 Total: -28.16 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.97 -8.35 -45.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274729981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.349 kcal (2) G-P(sol) polarization free energy of solvation -36.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds