Wall clock time and date at job start Tue Mar 31 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46882 * 2 1 4 4 N 1.46499 * 109.46827 * 179.97438 * 3 2 1 5 5 C 1.34778 * 119.99999 * 180.02562 * 4 3 2 6 6 O 1.21558 * 119.99510 * 0.02562 * 5 4 3 7 7 C 1.47844 * 120.00225 * 179.97438 * 5 4 3 8 8 C 1.39596 * 120.14198 * 359.72990 * 7 5 4 9 9 C 1.37935 * 119.85015 * 179.74474 * 8 7 5 10 10 C 1.38383 * 120.14664 * 0.52987 * 9 8 7 11 11 C 1.38339 * 120.28944 * 359.74060 * 10 9 8 12 12 C 1.50698 * 119.92680 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46950 * 269.97959 * 12 11 10 14 14 C 1.34778 * 119.99713 * 180.02562 * 13 12 11 15 15 O 1.21683 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.46378 * 120.00038 * 179.97438 * 14 13 12 17 17 H 1.08004 * 119.99757 * 353.94352 * 16 14 13 18 18 C 1.40046 * 120.00232 * 173.93543 * 16 14 13 19 19 N 1.30665 * 119.99900 * 6.15268 * 18 16 14 20 20 Si 1.86800 * 119.99898 * 186.14769 * 18 16 14 21 21 H 1.48509 * 109.46795 * 94.98838 * 20 18 16 22 22 H 1.48502 * 109.47100 * 214.98461 * 20 18 16 23 23 H 1.48498 * 109.47329 * 334.98889 * 20 18 16 24 24 C 1.37977 * 120.14755 * 359.97438 * 11 10 9 25 25 H 1.09006 * 109.47048 * 60.00307 * 1 2 3 26 26 H 1.08996 * 109.47018 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47640 * 300.00004 * 1 2 3 28 28 H 1.08995 * 109.47397 * 240.00453 * 2 1 3 29 29 H 1.08996 * 109.47053 * 119.99690 * 2 1 3 30 30 H 1.08996 * 109.47024 * 299.99708 * 3 2 1 31 31 H 1.08995 * 109.46734 * 60.00047 * 3 2 1 32 32 H 0.97005 * 120.00363 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.07541 * 359.97438 * 8 7 5 34 34 H 1.07996 * 119.92615 * 180.24873 * 9 8 7 35 35 H 1.07996 * 119.85397 * 179.76652 * 10 9 8 36 36 H 1.09000 * 109.47453 * 29.97598 * 12 11 10 37 37 H 1.08998 * 109.47364 * 149.97959 * 12 11 10 38 38 H 0.96995 * 120.00052 * 359.97438 * 13 12 11 39 39 H 0.97000 * 119.99997 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.07446 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1789 2.6098 0.0012 6 8 3.5710 3.6625 0.0018 7 6 5.6573 2.6098 0.0024 8 6 6.3583 1.4027 0.0086 9 6 7.7376 1.4097 0.0044 10 6 8.4265 2.6099 0.0051 11 6 7.7378 3.8097 0.0046 12 6 8.4962 5.1119 0.0049 13 7 8.7410 5.5342 1.3862 14 6 9.4072 6.6796 1.6326 15 8 9.8059 7.3627 0.7078 16 6 9.6513 7.1019 3.0127 17 1 9.2146 6.5496 3.8317 18 6 10.4511 8.2221 3.2712 19 7 10.8804 8.9605 2.2824 20 14 10.9040 8.6606 5.0296 21 1 12.2301 8.0789 5.3589 22 1 10.9621 10.1376 5.1722 23 1 9.8799 8.1138 5.9556 24 6 6.3581 3.8167 0.0030 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.9900 0.6025 0.0006 33 1 5.8219 0.4654 0.0129 34 1 8.2812 0.4765 0.0051 35 1 9.5065 2.6099 0.0056 36 1 9.4486 4.9778 -0.5082 37 1 7.9105 5.8736 -0.5096 38 1 8.4228 4.9900 2.1233 39 1 11.4341 9.7366 2.4615 40 1 5.8216 4.7540 0.0022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274729981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:14 Heat of formation + Delta-G solvation = -93.433049 kcal Electronic energy + Delta-G solvation = -21601.090575 eV Core-core repulsion = 18185.768621 eV Total energy + Delta-G solvation = -3415.321954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36148 -39.93387 -39.01907 -36.85481 -35.57856 -34.55442 -33.74840 -32.11199 -32.07188 -28.85390 -27.46939 -26.48577 -24.49571 -22.91500 -22.54908 -21.81221 -21.18571 -19.48797 -18.51556 -17.47718 -17.44475 -16.98549 -16.79791 -16.34717 -16.14320 -16.00468 -15.50005 -15.42231 -14.93456 -14.70427 -14.41530 -13.99055 -13.77958 -13.57988 -13.33646 -13.31976 -13.07128 -12.93461 -12.75592 -12.66377 -12.58790 -12.10363 -12.02829 -11.97211 -11.75231 -11.11766 -10.94668 -10.32740 -10.15034 -9.91969 -9.70982 -9.54658 -8.31596 -6.87629 -0.20360 0.27741 1.39548 1.40974 1.57264 1.76002 2.06569 2.24561 2.44496 2.74649 3.30687 3.56325 3.63769 3.65016 3.89913 3.91072 4.07498 4.09493 4.29113 4.29849 4.35665 4.59014 4.65627 4.70809 4.75370 4.83769 4.89180 4.96781 5.15315 5.23624 5.24773 5.28590 5.30611 5.35853 5.45179 5.56956 5.84415 5.86266 6.15347 6.23340 6.45987 6.84523 7.12710 7.49429 8.45077 8.64541 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.002715 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.529964 B =10310.432454 C =10815.953078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.113 3.887 4 N -0.709 5.709 5 C 0.555 3.445 6 O -0.587 6.587 7 C -0.151 4.151 8 C -0.067 4.067 9 C -0.113 4.113 10 C -0.076 4.076 11 C -0.108 4.108 12 C 0.174 3.826 13 N -0.749 5.749 14 C 0.537 3.463 15 O -0.633 6.633 16 C -0.573 4.573 17 H 0.087 0.913 18 C 0.027 3.973 19 N -0.821 5.821 20 Si 1.001 2.999 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.250 1.250 24 C -0.062 4.062 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.418 0.582 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.138 0.862 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.394 0.606 39 H 0.275 0.725 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.155 -25.732 -2.208 29.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.362 5.362 5 C 0.343 3.657 6 O -0.468 6.468 7 C -0.154 4.154 8 C -0.085 4.085 9 C -0.131 4.131 10 C -0.095 4.095 11 C -0.109 4.109 12 C 0.049 3.951 13 N -0.404 5.404 14 C 0.342 3.658 15 O -0.520 6.520 16 C -0.609 4.609 17 H 0.105 0.895 18 C -0.188 4.188 19 N -0.451 5.451 20 Si 0.820 3.180 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.173 1.173 24 C -0.082 4.082 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.256 0.744 33 H 0.187 0.813 34 H 0.190 0.810 35 H 0.156 0.844 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.227 0.773 39 H 0.085 0.915 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.255 -24.384 -2.977 28.401 hybrid contribution 0.266 0.571 0.622 0.885 sum -13.989 -23.813 -2.355 27.718 Atomic orbital electron populations 1.21703 0.94262 1.02909 1.02109 1.21696 0.97148 0.93393 1.04056 1.21542 0.78561 0.99370 1.01520 1.45771 1.07866 1.08142 1.74385 1.18547 0.87688 0.83912 0.75508 1.90774 1.70874 1.33271 1.51878 1.19856 0.92137 0.94930 1.08467 1.21674 0.94855 0.96736 0.95277 1.21507 0.93923 0.98638 0.99023 1.21570 1.01227 0.91562 0.95134 1.19769 0.93108 0.94960 1.03046 1.19773 0.97618 0.92167 0.85495 1.45872 1.62365 1.25862 1.06297 1.18664 0.77090 0.79402 0.90683 1.90548 1.57010 1.56559 1.47901 1.21409 1.33971 1.14128 0.91442 0.89521 1.27023 0.93498 0.94270 1.04021 1.70191 1.26493 1.12857 1.35525 0.84962 0.79580 0.77899 0.75543 1.18419 1.19716 1.17301 1.21051 0.93440 0.97924 0.95798 0.92668 0.90815 0.92740 0.89837 0.89934 0.92553 0.92698 0.74370 0.81263 0.80970 0.84392 0.92920 0.94811 0.77298 0.91460 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.44 16 2 C -0.13 -0.94 6.05 30.60 0.19 -0.75 16 3 C 0.11 1.72 5.67 86.38 0.49 2.21 16 4 N -0.71 -11.46 5.51 -465.97 -2.57 -14.03 16 5 C 0.55 14.63 7.77 86.79 0.67 15.30 16 6 O -0.59 -21.49 16.35 -3.90 -0.06 -21.56 16 7 C -0.15 -3.73 5.87 -20.09 -0.12 -3.85 16 8 C -0.07 -1.03 9.54 22.53 0.21 -0.81 16 9 C -0.11 -1.76 10.03 22.23 0.22 -1.54 16 10 C -0.08 -1.79 9.69 22.33 0.22 -1.57 16 11 C -0.11 -3.41 5.24 -19.90 -0.10 -3.51 16 12 C 0.17 7.24 5.79 85.63 0.50 7.73 16 13 N -0.75 -35.75 5.54 -471.15 -2.61 -38.36 16 14 C 0.54 32.48 7.74 86.36 0.67 33.14 16 15 O -0.63 -43.97 15.04 -4.29 -0.06 -44.04 16 16 C -0.57 -33.54 9.53 24.83 0.24 -33.31 16 17 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 18 C 0.03 1.54 5.49 85.30 0.47 2.01 16 19 N -0.82 -51.46 11.85 21.83 0.26 -51.20 16 20 Si 1.00 41.84 29.56 68.60 2.03 43.87 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 23 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 24 C -0.06 -1.99 9.24 22.53 0.21 -1.78 16 25 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.07 0.38 8.14 -2.39 -0.02 0.37 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.42 3.38 6.51 -92.70 -0.60 2.78 16 33 H 0.17 0.95 6.41 -2.91 -0.02 0.93 16 34 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.05 2.24 8.08 -2.39 -0.02 2.22 16 37 H 0.03 1.55 8.08 -2.39 -0.02 1.53 16 38 H 0.39 16.60 8.44 -92.71 -0.78 15.81 16 39 H 0.28 15.55 8.29 -92.71 -0.77 14.78 16 40 H 0.10 3.94 7.65 -2.91 -0.02 3.92 16 Total: -1.00 -87.69 347.21 1.23 -86.46 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.32 Total: 26.01 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 4.57 Total: 12.85 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -4.92 Total: -103.59 kcal Atomic # 8 Polarization: -65.47 SS G_CDS: -0.13 Total: -65.59 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -87.69 1.23 -86.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274729981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.976 kcal (2) G-P(sol) polarization free energy of solvation -87.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds