Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50694 * 120.00200 * 2 1 4 4 C 1.30999 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.50703 * 119.99948 * 359.97438 * 4 2 1 6 6 N 1.46504 * 109.47073 * 125.00428 * 5 4 2 7 7 C 1.34770 * 119.99986 * 180.02562 * 6 5 4 8 8 O 1.21581 * 120.00402 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99855 * 179.97438 * 7 6 5 10 10 C 1.39944 * 119.99743 * 174.72987 * 9 7 6 11 11 C 1.38960 * 120.03726 * 326.33961 * 10 9 7 12 12 C 1.38156 * 120.06534 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.13776 * 359.72153 * 12 11 10 14 14 C 1.38905 * 120.06764 * 0.55305 * 13 12 11 15 15 O 1.35748 * 120.02872 * 179.71950 * 14 13 12 16 16 C 1.34836 * 116.99697 * 173.82592 * 15 14 13 17 17 H 1.07996 * 119.99847 * 354.58946 * 16 15 14 18 18 C 1.38648 * 119.99925 * 174.59241 * 16 15 14 19 19 N 1.31559 * 120.00352 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00371 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47056 * 89.99766 * 20 18 16 22 22 H 1.48493 * 109.47318 * 210.00084 * 20 18 16 23 23 H 1.48500 * 109.46925 * 330.00192 * 20 18 16 24 24 C 1.38706 * 120.03321 * 146.35995 * 10 9 7 25 25 H 1.09001 * 109.47129 * 239.99848 * 1 2 3 26 26 H 1.09000 * 109.46909 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47411 * 119.99628 * 1 2 3 28 28 H 1.08997 * 109.47617 * 270.00113 * 3 2 1 29 29 H 1.09004 * 109.47355 * 29.99937 * 3 2 1 30 30 H 1.09005 * 109.47402 * 149.99681 * 3 2 1 31 31 H 1.08006 * 120.00152 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47369 * 5.00103 * 5 4 2 33 33 H 1.08999 * 109.47024 * 244.99738 * 5 4 2 34 34 H 0.97002 * 119.99797 * 359.97438 * 6 5 4 35 35 H 0.96993 * 119.99962 * 354.73548 * 9 7 6 36 36 H 1.07995 * 119.96528 * 0.02562 * 11 10 9 37 37 H 1.07998 * 119.93109 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.96184 * 180.27952 * 13 12 11 39 39 H 0.96993 * 120.00734 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.06323 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4084 -2.4396 -0.0005 6 7 1.8500 -3.2584 -1.1323 7 6 1.3093 -4.4763 -1.3343 8 8 0.4555 -4.8957 -0.5772 9 7 1.7152 -5.2294 -2.3759 10 6 1.2360 -6.5360 -2.5233 11 6 0.9619 -7.3072 -1.4003 12 6 0.4894 -8.5973 -1.5452 13 6 0.2824 -9.1228 -2.8063 14 6 0.5599 -8.3589 -3.9327 15 8 0.3617 -8.8779 -5.1713 16 6 0.5276 -8.0443 -6.2180 17 1 0.7198 -6.9954 -6.0477 18 6 0.4513 -8.5339 -7.5129 19 7 0.6127 -7.7206 -8.5343 20 14 0.1195 -10.3485 -7.8075 21 1 -1.3452 -10.5750 -7.9006 22 1 0.7672 -10.7707 -9.0752 23 1 0.6724 -11.1421 -6.6808 24 6 1.0346 -7.0627 -3.7906 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 2.4422 1.6197 -1.0276 29 1 1.6715 2.0648 0.5138 30 1 3.2130 1.1747 0.5139 31 1 3.2420 -1.1346 -0.0001 32 1 0.3401 -2.2424 -0.0896 33 1 1.6033 -2.9716 0.9307 34 1 2.5309 -2.9237 -1.7366 35 1 2.3394 -4.8658 -3.0231 36 1 1.1185 -6.8976 -0.4134 37 1 0.2766 -9.1946 -0.6710 38 1 -0.0914 -10.1300 -2.9162 39 1 0.5598 -8.0631 -9.4402 40 1 1.2477 -6.4654 -4.6649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276624264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -15.363010 kcal Electronic energy + Delta-G solvation = -21826.187201 eV Core-core repulsion = 18414.250618 eV Total energy + Delta-G solvation = -3411.936583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36433 -38.92865 -37.48477 -36.50889 -34.26234 -34.14640 -32.32990 -29.83289 -29.14084 -28.33818 -27.96622 -25.20449 -24.33096 -22.05308 -21.73596 -20.44543 -18.91269 -18.09328 -17.73533 -17.43546 -16.16732 -15.80238 -15.21717 -15.14937 -14.70011 -14.57328 -14.33940 -14.09789 -13.82581 -13.75992 -13.49612 -13.06421 -12.87655 -12.72331 -12.26753 -12.25156 -12.13306 -11.95892 -11.64564 -11.21916 -11.18915 -10.95270 -10.67550 -10.29261 -10.05426 -9.67217 -9.48159 -9.34978 -8.97720 -8.82881 -7.74156 -7.23940 -6.40853 -4.07913 1.62568 2.02124 2.33236 2.86686 3.23598 3.26959 3.33355 3.41828 4.24821 4.30197 4.39101 4.54725 4.55600 4.90719 4.91885 5.09859 5.13102 5.16804 5.21889 5.41098 5.50201 5.51833 5.63183 5.66382 5.73387 5.95974 6.03558 6.19863 6.22986 6.25467 6.31267 6.47896 6.54268 6.77077 6.95545 7.20175 7.24941 7.30199 7.64540 7.80105 8.03192 8.06634 8.65564 8.94896 9.57920 10.67025 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022690 B = 0.002950 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.731303 B = 9488.161586 C =10424.496098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C -0.120 4.120 4 C -0.191 4.191 5 C 0.167 3.833 6 N -0.743 5.743 7 C 0.703 3.297 8 O -0.572 6.572 9 N -0.682 5.682 10 C 0.199 3.801 11 C -0.197 4.197 12 C -0.064 4.064 13 C -0.203 4.203 14 C 0.175 3.825 15 O -0.217 6.217 16 C -0.388 4.388 17 H 0.104 0.896 18 C 0.063 3.937 19 N -0.882 5.882 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.246 4.246 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.397 0.603 35 H 0.404 0.596 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.279 0.721 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 13.666 15.282 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.105 4.105 3 C -0.177 4.177 4 C -0.209 4.209 5 C 0.043 3.957 6 N -0.399 5.399 7 C 0.403 3.597 8 O -0.449 6.449 9 N -0.329 5.329 10 C 0.105 3.895 11 C -0.218 4.218 12 C -0.083 4.083 13 C -0.223 4.223 14 C 0.122 3.878 15 O -0.122 6.122 16 C -0.464 4.464 17 H 0.122 0.878 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.268 4.268 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.230 0.770 35 H 0.239 0.761 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.750 13.129 15.700 20.806 hybrid contribution 0.617 -0.100 -1.014 1.191 sum 4.366 13.029 14.686 20.112 Atomic orbital electron populations 1.20958 0.92063 1.02619 1.02745 1.21749 0.96095 0.95030 0.97673 1.20900 0.99727 0.94695 1.02358 1.22665 0.99787 0.93141 1.05331 1.20219 0.98486 0.88149 0.88830 1.45103 1.45302 1.17131 1.32402 1.15903 0.81571 0.80440 0.81768 1.90941 1.33933 1.72263 1.47735 1.42594 1.48957 1.13450 1.27919 1.17193 0.96777 0.81947 0.93541 1.20635 1.09353 0.94389 0.97470 1.20524 0.97426 0.94502 0.95847 1.20229 1.10700 1.00875 0.90458 1.18790 0.92272 0.91034 0.85684 1.83613 1.78087 1.39058 1.11437 1.20724 1.50593 0.92232 0.82825 0.87836 1.24459 0.95818 0.99942 0.93790 1.69642 1.47795 1.35727 0.98871 0.86175 0.79041 0.83655 0.78015 1.19867 1.20896 1.18295 1.20897 1.11729 0.98184 0.95984 0.91037 0.91871 0.90937 0.91090 0.91669 0.91710 0.86685 0.90747 0.90952 0.76963 0.76138 0.86042 0.86478 0.86422 0.91105 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.53 36.01 0.31 -0.61 16 2 C -0.10 -0.76 6.05 -101.07 -0.61 -1.37 16 3 C -0.12 -0.67 9.97 36.00 0.36 -0.31 16 4 C -0.19 -1.48 9.22 -36.02 -0.33 -1.81 16 5 C 0.17 1.69 5.91 -5.19 -0.03 1.66 16 6 N -0.74 -8.31 5.55 -66.41 -0.37 -8.68 16 7 C 0.70 10.99 8.30 -86.92 -0.72 10.27 16 8 O -0.57 -11.09 14.05 5.29 0.07 -11.02 16 9 N -0.68 -10.68 5.35 -14.24 -0.08 -10.76 16 10 C 0.20 3.86 6.27 -83.71 -0.52 3.34 16 11 C -0.20 -3.78 8.65 -39.34 -0.34 -4.12 16 12 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 13 C -0.20 -4.14 9.99 -39.36 -0.39 -4.53 16 14 C 0.17 4.09 6.64 -39.14 -0.26 3.83 16 15 O -0.22 -5.73 8.58 0.04 0.00 -5.73 16 16 C -0.39 -10.90 9.90 30.88 0.31 -10.59 16 17 H 0.10 2.96 5.53 -52.49 -0.29 2.67 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 19 N -0.88 -25.38 13.96 55.48 0.77 -24.60 16 20 Si 0.91 21.69 28.62 -169.99 -4.86 16.83 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.25 -5.36 9.04 -39.21 -0.35 -5.71 16 25 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 26 H 0.06 0.38 7.94 -51.93 -0.41 -0.03 16 27 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.32 8.05 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 8.06 -51.93 -0.42 -0.09 16 31 H 0.12 0.77 8.04 -52.48 -0.42 0.35 16 32 H 0.07 0.82 5.79 -51.93 -0.30 0.52 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 3.35 8.48 -40.82 -0.35 3.00 16 35 H 0.40 5.06 8.83 -40.82 -0.36 4.70 16 36 H 0.12 2.31 6.43 -52.49 -0.34 1.97 16 37 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.14 3.02 5.72 -52.49 -0.30 2.72 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -32.56 340.53 -7.66 -40.22 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.24 Total: 8.50 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -3.09 Total: -9.88 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.33 Total: -44.04 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.07 Total: -16.75 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.56 -7.66 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276624264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.852 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds