Wall clock time and date at job start Tue Mar 31 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50694 * 120.00200 * 2 1 4 4 C 1.30999 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.50703 * 119.99948 * 359.97438 * 4 2 1 6 6 N 1.46504 * 109.47073 * 125.00428 * 5 4 2 7 7 C 1.34770 * 119.99986 * 180.02562 * 6 5 4 8 8 O 1.21581 * 120.00402 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99855 * 179.97438 * 7 6 5 10 10 C 1.39944 * 119.99743 * 174.72987 * 9 7 6 11 11 C 1.38960 * 120.03726 * 326.33961 * 10 9 7 12 12 C 1.38156 * 120.06534 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.13776 * 359.72153 * 12 11 10 14 14 C 1.38905 * 120.06764 * 0.55305 * 13 12 11 15 15 O 1.35748 * 120.02872 * 179.71950 * 14 13 12 16 16 C 1.34836 * 116.99697 * 173.82592 * 15 14 13 17 17 H 1.07996 * 119.99847 * 354.58946 * 16 15 14 18 18 C 1.38648 * 119.99925 * 174.59241 * 16 15 14 19 19 N 1.31559 * 120.00352 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00371 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47056 * 89.99766 * 20 18 16 22 22 H 1.48493 * 109.47318 * 210.00084 * 20 18 16 23 23 H 1.48500 * 109.46925 * 330.00192 * 20 18 16 24 24 C 1.38706 * 120.03321 * 146.35995 * 10 9 7 25 25 H 1.09001 * 109.47129 * 239.99848 * 1 2 3 26 26 H 1.09000 * 109.46909 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47411 * 119.99628 * 1 2 3 28 28 H 1.08997 * 109.47617 * 270.00113 * 3 2 1 29 29 H 1.09004 * 109.47355 * 29.99937 * 3 2 1 30 30 H 1.09005 * 109.47402 * 149.99681 * 3 2 1 31 31 H 1.08006 * 120.00152 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47369 * 5.00103 * 5 4 2 33 33 H 1.08999 * 109.47024 * 244.99738 * 5 4 2 34 34 H 0.97002 * 119.99797 * 359.97438 * 6 5 4 35 35 H 0.96993 * 119.99962 * 354.73548 * 9 7 6 36 36 H 1.07995 * 119.96528 * 0.02562 * 11 10 9 37 37 H 1.07998 * 119.93109 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.96184 * 180.27952 * 13 12 11 39 39 H 0.96993 * 120.00734 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.06323 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4084 -2.4396 -0.0005 6 7 1.8500 -3.2584 -1.1323 7 6 1.3093 -4.4763 -1.3343 8 8 0.4555 -4.8957 -0.5772 9 7 1.7152 -5.2294 -2.3759 10 6 1.2360 -6.5360 -2.5233 11 6 0.9619 -7.3072 -1.4003 12 6 0.4894 -8.5973 -1.5452 13 6 0.2824 -9.1228 -2.8063 14 6 0.5599 -8.3589 -3.9327 15 8 0.3617 -8.8779 -5.1713 16 6 0.5276 -8.0443 -6.2180 17 1 0.7198 -6.9954 -6.0477 18 6 0.4513 -8.5339 -7.5129 19 7 0.6127 -7.7206 -8.5343 20 14 0.1195 -10.3485 -7.8075 21 1 -1.3452 -10.5750 -7.9006 22 1 0.7672 -10.7707 -9.0752 23 1 0.6724 -11.1421 -6.6808 24 6 1.0346 -7.0627 -3.7906 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 2.4422 1.6197 -1.0276 29 1 1.6715 2.0648 0.5138 30 1 3.2130 1.1747 0.5139 31 1 3.2420 -1.1346 -0.0001 32 1 0.3401 -2.2424 -0.0896 33 1 1.6033 -2.9716 0.9307 34 1 2.5309 -2.9237 -1.7366 35 1 2.3394 -4.8658 -3.0231 36 1 1.1185 -6.8976 -0.4134 37 1 0.2766 -9.1946 -0.6710 38 1 -0.0914 -10.1300 -2.9162 39 1 0.5598 -8.0631 -9.4402 40 1 1.2477 -6.4654 -4.6649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276624264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:55 Heat of formation + Delta-G solvation = -36.603796 kcal Electronic energy + Delta-G solvation = -21827.108270 eV Core-core repulsion = 18414.250618 eV Total energy + Delta-G solvation = -3412.857653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72899 -40.58233 -38.60053 -37.79607 -35.66181 -35.21600 -34.37888 -31.18587 -30.62098 -29.38406 -28.62981 -27.18187 -25.19814 -23.42623 -23.37862 -21.82418 -20.24245 -19.57997 -19.37007 -18.48941 -17.50123 -17.07011 -16.66016 -16.55115 -15.93943 -15.82982 -15.72076 -15.55069 -15.22511 -14.85379 -14.66010 -14.46413 -14.17899 -14.02501 -13.65823 -13.29332 -13.23330 -12.81429 -12.77768 -12.74127 -12.47896 -12.39158 -12.07493 -11.83298 -11.58893 -11.37218 -11.18907 -10.82040 -10.27581 -9.73794 -9.36560 -8.88484 -8.48884 -6.21602 0.43199 0.66748 0.95391 1.34088 1.38259 1.54096 1.74320 2.01872 2.29971 2.78880 3.10306 3.12661 3.22479 3.76272 4.00672 4.11854 4.29654 4.32720 4.41465 4.43559 4.57959 4.63125 4.67092 4.71703 4.82007 4.90805 4.92683 4.96955 5.10690 5.17251 5.31700 5.35492 5.38948 5.50484 5.65669 5.67450 5.75999 5.88210 5.90833 5.99792 6.23973 6.85649 6.91483 7.41364 7.59104 8.62549 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022690 B = 0.002950 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.731303 B = 9488.161586 C =10424.496098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.120 4.120 4 C -0.196 4.196 5 C 0.166 3.834 6 N -0.723 5.723 7 C 0.700 3.300 8 O -0.610 6.610 9 N -0.677 5.677 10 C 0.202 3.798 11 C -0.193 4.193 12 C -0.051 4.051 13 C -0.203 4.203 14 C 0.141 3.859 15 O -0.239 6.239 16 C -0.397 4.397 17 H 0.081 0.919 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.969 3.031 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.257 4.257 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.418 0.582 36 H 0.130 0.870 37 H 0.160 0.840 38 H 0.135 0.865 39 H 0.284 0.716 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 13.839 17.146 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.102 4.102 3 C -0.176 4.176 4 C -0.214 4.214 5 C 0.043 3.957 6 N -0.379 5.379 7 C 0.401 3.599 8 O -0.490 6.490 9 N -0.325 5.325 10 C 0.106 3.894 11 C -0.214 4.214 12 C -0.070 4.070 13 C -0.223 4.223 14 C 0.091 3.909 15 O -0.147 6.147 16 C -0.474 4.474 17 H 0.099 0.901 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.278 4.278 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.255 0.745 36 H 0.147 0.853 37 H 0.177 0.823 38 H 0.153 0.847 39 H 0.094 0.906 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.287 13.368 17.585 22.502 hybrid contribution 0.479 0.034 -1.311 1.396 sum 4.766 13.402 16.275 21.615 Atomic orbital electron populations 1.20992 0.92347 1.03305 1.02106 1.21982 0.96149 0.95772 0.96286 1.20937 0.99998 0.93775 1.02928 1.22577 1.00315 0.91878 1.06650 1.20286 0.98391 0.89047 0.87969 1.45014 1.44658 1.15541 1.32672 1.16050 0.81329 0.81353 0.81168 1.90908 1.35696 1.73399 1.48967 1.42497 1.48995 1.12427 1.28533 1.17235 0.96048 0.83406 0.92691 1.20931 1.08157 0.94716 0.97549 1.20974 0.95285 0.94332 0.96383 1.20535 1.10133 1.01480 0.90146 1.19334 0.93716 0.92285 0.85558 1.83557 1.80203 1.38933 1.11979 1.20677 1.50899 0.91817 0.83974 0.90118 1.25254 0.95768 1.04264 0.93416 1.69720 1.49601 1.37596 0.99421 0.85234 0.79146 0.78313 0.78165 1.19194 1.19321 1.18520 1.20854 1.12508 0.97944 0.96543 0.91158 0.90567 0.92131 0.90564 0.90827 0.90886 0.85166 0.91759 0.91522 0.75108 0.74467 0.85256 0.82269 0.84694 0.90593 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.53 71.24 0.61 -1.12 16 2 C -0.10 -1.28 6.05 -16.49 -0.10 -1.38 16 3 C -0.12 -1.04 9.97 71.23 0.71 -0.33 16 4 C -0.20 -2.67 9.22 25.65 0.24 -2.43 16 5 C 0.17 3.18 5.91 85.63 0.51 3.69 16 6 N -0.72 -15.17 5.55 -482.29 -2.68 -17.85 16 7 C 0.70 21.19 8.30 179.05 1.49 22.68 16 8 O -0.61 -23.12 14.05 -3.97 -0.06 -23.17 16 9 N -0.68 -20.71 5.35 -317.23 -1.70 -22.40 16 10 C 0.20 7.70 6.27 38.13 0.24 7.93 16 11 C -0.19 -7.00 8.65 22.42 0.19 -6.81 16 12 C -0.05 -1.73 10.03 22.23 0.22 -1.51 16 13 C -0.20 -7.99 9.99 22.41 0.22 -7.76 16 14 C 0.14 6.67 6.64 22.56 0.15 6.82 16 15 O -0.24 -12.95 8.58 -22.78 -0.20 -13.14 16 16 C -0.40 -23.18 9.90 67.92 0.67 -22.51 16 17 H 0.08 4.91 5.53 -2.91 -0.02 4.90 16 18 C 0.01 0.66 5.49 84.83 0.47 1.12 16 19 N -0.92 -54.56 13.96 21.61 0.30 -54.26 16 20 Si 0.97 45.13 28.62 68.60 1.96 47.09 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 24 C -0.26 -11.41 9.04 22.51 0.20 -11.21 16 25 H 0.07 0.94 7.85 -2.39 -0.02 0.92 16 26 H 0.08 0.79 7.94 -2.39 -0.02 0.77 16 27 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.53 8.05 -2.38 -0.02 0.51 16 30 H 0.07 0.54 8.06 -2.38 -0.02 0.52 16 31 H 0.13 1.40 8.04 -2.91 -0.02 1.38 16 32 H 0.06 1.39 5.79 -2.39 -0.01 1.37 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.41 6.18 8.48 -92.71 -0.79 5.39 16 35 H 0.42 10.21 8.83 -92.71 -0.82 9.39 16 36 H 0.13 4.60 6.43 -2.91 -0.02 4.58 16 37 H 0.16 4.06 8.06 -2.91 -0.02 4.03 16 38 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.12 5.62 5.72 -2.91 -0.02 5.60 16 Total: -1.00 -71.50 340.53 2.93 -68.57 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.52 Total: 28.00 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 5.82 Total: -12.83 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -4.07 Total: -94.51 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.25 Total: -36.32 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.96 Total: 47.09 kcal Total: -71.50 2.93 -68.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276624264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.966 kcal (2) G-P(sol) polarization free energy of solvation -71.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds