Wall clock time and date at job start Tue Mar 31 2020 06:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47376 * 2 1 4 4 N 1.46496 * 109.47004 * 179.97438 * 3 2 1 5 5 C 1.37096 * 120.00387 * 264.74567 * 4 3 2 6 6 H 1.08001 * 120.00130 * 146.16544 * 5 4 3 7 7 C 1.38954 * 119.99818 * 326.17072 * 5 4 3 8 8 N 1.31411 * 119.99835 * 337.67839 * 7 5 4 9 9 Si 1.86803 * 119.99981 * 157.68247 * 7 5 4 10 10 H 1.48496 * 109.46968 * 59.99931 * 9 7 5 11 11 H 1.48506 * 109.46771 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46952 * 299.99720 * 9 7 5 13 13 C 1.34782 * 120.00173 * 84.74789 * 4 3 2 14 14 O 1.21290 * 120.00242 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99635 * 0.02562 * 13 4 3 16 16 C 1.50706 * 109.46899 * 179.97438 * 15 13 4 17 17 C 1.38357 * 119.85071 * 89.99585 * 16 15 13 18 18 C 1.37961 * 120.14051 * 179.97438 * 17 16 15 19 19 C 1.39574 * 119.85411 * 0.02562 * 18 17 16 20 20 C 1.47845 * 120.14694 * 179.97438 * 19 18 17 21 21 N 1.34780 * 120.00192 * 179.97438 * 20 19 18 22 22 O 1.21552 * 119.99650 * 359.97438 * 20 19 18 23 23 C 1.39578 * 119.71119 * 0.24955 * 19 18 17 24 24 C 1.37960 * 119.85209 * 359.47270 * 23 19 18 25 25 H 1.08999 * 109.46794 * 59.99944 * 1 2 3 26 26 H 1.09000 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47014 * 300.00064 * 1 2 3 28 28 H 1.08995 * 109.47385 * 239.99616 * 2 1 3 29 29 H 1.09008 * 109.46912 * 119.99913 * 2 1 3 30 30 H 1.08999 * 109.47101 * 59.99989 * 3 2 1 31 31 H 1.08995 * 109.46713 * 299.99853 * 3 2 1 32 32 H 0.96996 * 120.00052 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47531 * 59.99499 * 15 13 4 34 34 H 1.09006 * 109.47035 * 299.99137 * 15 13 4 35 35 H 1.08000 * 119.93168 * 0.02562 * 17 16 15 36 36 H 1.07997 * 120.07502 * 179.97438 * 18 17 16 37 37 H 0.96996 * 119.99987 * 0.02562 * 21 20 19 38 38 H 0.96996 * 119.99814 * 179.72406 * 21 20 19 39 39 H 1.08005 * 120.07315 * 179.72382 * 23 19 18 40 40 H 1.07994 * 119.92778 * 180.26802 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.5513 1.1831 6 1 5.1328 1.0399 1.3101 7 6 3.6714 2.3195 2.2184 8 7 2.8003 3.2687 1.9594 9 14 4.2125 2.0029 3.9781 10 1 5.6805 2.1981 4.0872 11 1 3.5186 2.9503 4.8872 12 1 3.8687 0.6092 4.3585 13 6 4.1794 1.3354 -1.1614 14 8 5.3923 1.3357 -1.1610 15 6 3.4264 1.2163 -2.4614 16 6 4.4062 1.1117 -3.6017 17 6 4.8539 -0.1310 -4.0132 18 6 5.7504 -0.2338 -5.0567 19 6 6.2062 0.9196 -5.6972 20 6 7.1674 0.8170 -6.8159 21 7 7.6052 1.9326 -7.4327 22 8 7.5628 -0.2734 -7.1793 23 6 5.7550 2.1705 -5.2733 24 6 4.8540 2.2590 -4.2323 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.4379 3.8047 2.6820 33 1 2.8001 2.0975 -2.6006 34 1 2.7994 0.3249 -2.4378 35 1 4.5001 -1.0227 -3.5170 36 1 6.0995 -1.2043 -5.3768 37 1 7.2899 2.8028 -7.1424 38 1 8.2389 1.8656 -8.1639 39 1 6.1072 3.0670 -5.7618 40 1 4.5007 3.2260 -3.9061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277514593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:30 Heat of formation + Delta-G solvation = -54.832213 kcal Electronic energy + Delta-G solvation = -22646.635955 eV Core-core repulsion = 19232.987859 eV Total energy + Delta-G solvation = -3413.648096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.07328 -38.92843 -37.80418 -35.29074 -33.96173 -32.96278 -32.14612 -31.20318 -30.74335 -27.92557 -25.82478 -24.50928 -22.84558 -22.50355 -21.02524 -20.39731 -18.91140 -18.15057 -16.90729 -16.86737 -16.08165 -15.27903 -15.07738 -14.90611 -14.75770 -14.68459 -14.26853 -13.79367 -13.74927 -13.42723 -13.12343 -13.00690 -12.54320 -12.09875 -11.72732 -11.67867 -11.46017 -11.36729 -11.20823 -10.95143 -10.85022 -10.63402 -10.39102 -10.25601 -10.07787 -9.96249 -9.83177 -8.96320 -8.80505 -8.72947 -8.29759 -7.51577 -6.36306 -3.96971 0.98546 1.57550 2.92106 3.17196 3.23550 3.27600 3.44846 3.86485 3.97607 4.16299 4.75144 4.85554 4.88253 5.00115 5.08192 5.17788 5.47939 5.51306 5.58783 5.64196 5.71374 5.82328 5.90285 6.01607 6.06674 6.19096 6.23525 6.34853 6.38164 6.44216 6.48211 6.56821 6.65945 6.82200 6.88723 7.06272 7.23309 7.25300 7.57127 8.17602 8.21196 8.48136 9.16146 9.38611 9.98181 10.67222 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022062 B = 0.003708 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.858730 B = 7550.110833 C = 8183.853737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.100 3.900 4 N -0.440 5.440 5 C -0.307 4.307 6 H 0.092 0.908 7 C 0.037 3.963 8 N -0.869 5.869 9 Si 0.916 3.084 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.460 3.540 14 O -0.575 6.575 15 C -0.109 4.109 16 C -0.010 4.010 17 C -0.117 4.117 18 C -0.056 4.056 19 C -0.158 4.158 20 C 0.568 3.432 21 N -0.854 5.854 22 O -0.548 6.548 23 C -0.084 4.084 24 C -0.116 4.116 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.047 0.953 32 H 0.268 0.732 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.401 0.599 38 H 0.402 0.598 39 H 0.122 0.878 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 -0.706 -12.041 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.024 4.024 4 N -0.159 5.159 5 C -0.435 4.435 6 H 0.109 0.891 7 C -0.167 4.167 8 N -0.508 5.508 9 Si 0.743 3.257 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.248 3.752 14 O -0.458 6.458 15 C -0.149 4.149 16 C -0.011 4.011 17 C -0.135 4.135 18 C -0.075 4.075 19 C -0.161 4.161 20 C 0.356 3.644 21 N -0.418 5.418 22 O -0.426 6.426 23 C -0.102 4.102 24 C -0.134 4.134 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.231 0.769 38 H 0.232 0.768 39 H 0.140 0.860 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.943 -1.318 -12.007 12.235 hybrid contribution 0.186 0.484 0.808 0.960 sum -1.757 -0.835 -11.199 11.367 Atomic orbital electron populations 1.21678 0.96308 1.00708 1.01588 1.21984 0.94928 0.99338 1.01684 1.21693 0.82029 0.94503 1.04221 1.43504 1.04593 1.62993 1.04791 1.19421 1.06851 1.28476 0.88770 0.89072 1.25303 0.97296 0.93666 1.00454 1.69905 1.30966 1.16873 1.33011 0.86159 0.79162 0.78306 0.82100 1.19745 1.20970 1.19887 1.20060 0.88031 0.82853 0.84292 1.90557 1.13896 1.54704 1.86663 1.20866 0.97349 1.04001 0.92646 1.19761 0.94840 0.93138 0.93353 1.20989 0.98118 0.97535 0.96886 1.21147 0.94496 0.97984 0.93875 1.19708 1.02064 0.94773 0.99551 1.18370 0.80321 0.83902 0.81849 1.43759 1.49745 1.09278 1.39022 1.90784 1.58715 1.27233 1.65862 1.21128 0.96512 0.95859 0.96735 1.20946 0.97977 0.98526 0.95933 0.93143 0.93443 0.92718 0.93235 0.91699 0.86759 0.93449 0.92180 0.88941 0.89124 0.85534 0.85014 0.76932 0.76766 0.86049 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.14 -2.41 6.17 -26.73 -0.16 -2.57 16 3 C 0.10 2.05 4.72 -4.04 -0.02 2.03 16 4 N -0.44 -10.70 2.56 -114.81 -0.29 -11.00 16 5 C -0.31 -8.33 8.98 -14.93 -0.13 -8.46 16 6 H 0.09 2.61 7.70 -52.49 -0.40 2.21 16 7 C 0.04 0.95 4.92 -17.47 -0.09 0.86 16 8 N -0.87 -22.68 11.33 55.50 0.63 -22.05 16 9 Si 0.92 20.24 29.61 -169.99 -5.03 15.20 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.46 10.76 7.59 -10.98 -0.08 10.68 16 14 O -0.58 -15.69 15.86 5.55 0.09 -15.60 16 15 C -0.11 -1.88 4.43 -29.03 -0.13 -2.01 16 16 C -0.01 -0.17 4.38 -104.53 -0.46 -0.63 16 17 C -0.12 -1.84 9.68 -39.64 -0.38 -2.22 16 18 C -0.06 -0.85 9.60 -39.18 -0.38 -1.23 16 19 C -0.16 -2.26 5.87 -104.97 -0.62 -2.87 16 20 C 0.57 7.81 8.05 -12.33 -0.10 7.71 16 21 N -0.85 -7.65 8.82 30.53 0.27 -7.39 16 22 O -0.55 -9.44 17.18 5.32 0.09 -9.35 16 23 C -0.08 -1.08 9.54 -39.18 -0.37 -1.45 16 24 C -0.12 -1.74 9.68 -39.64 -0.38 -2.12 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.79 6.60 -51.93 -0.34 0.45 16 29 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.11 2.63 5.34 -51.93 -0.28 2.35 16 31 H 0.05 0.88 6.66 -51.93 -0.35 0.53 16 32 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.09 1.46 7.35 -51.93 -0.38 1.07 16 34 H 0.09 1.38 6.48 -51.93 -0.34 1.05 16 35 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.13 1.90 7.65 -52.49 -0.40 1.50 16 37 H 0.40 2.56 6.86 -40.82 -0.28 2.28 16 38 H 0.40 2.91 8.93 -40.82 -0.36 2.54 16 39 H 0.12 1.10 6.41 -52.48 -0.34 0.76 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -33.53 337.16 -7.25 -40.78 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.14 Total: 8.26 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.94 Total: -3.93 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.60 Total: -40.43 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.18 Total: -24.95 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.53 -7.25 -40.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277514593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.054 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds