Wall clock time and date at job start Tue Mar 31 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47376 * 2 1 4 4 N 1.46496 * 109.47004 * 179.97438 * 3 2 1 5 5 C 1.37096 * 120.00387 * 264.74567 * 4 3 2 6 6 H 1.08001 * 120.00130 * 146.16544 * 5 4 3 7 7 C 1.38954 * 119.99818 * 326.17072 * 5 4 3 8 8 N 1.31411 * 119.99835 * 337.67839 * 7 5 4 9 9 Si 1.86803 * 119.99981 * 157.68247 * 7 5 4 10 10 H 1.48496 * 109.46968 * 59.99931 * 9 7 5 11 11 H 1.48506 * 109.46771 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46952 * 299.99720 * 9 7 5 13 13 C 1.34782 * 120.00173 * 84.74789 * 4 3 2 14 14 O 1.21290 * 120.00242 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99635 * 0.02562 * 13 4 3 16 16 C 1.50706 * 109.46899 * 179.97438 * 15 13 4 17 17 C 1.38357 * 119.85071 * 89.99585 * 16 15 13 18 18 C 1.37961 * 120.14051 * 179.97438 * 17 16 15 19 19 C 1.39574 * 119.85411 * 0.02562 * 18 17 16 20 20 C 1.47845 * 120.14694 * 179.97438 * 19 18 17 21 21 N 1.34780 * 120.00192 * 179.97438 * 20 19 18 22 22 O 1.21552 * 119.99650 * 359.97438 * 20 19 18 23 23 C 1.39578 * 119.71119 * 0.24955 * 19 18 17 24 24 C 1.37960 * 119.85209 * 359.47270 * 23 19 18 25 25 H 1.08999 * 109.46794 * 59.99944 * 1 2 3 26 26 H 1.09000 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47014 * 300.00064 * 1 2 3 28 28 H 1.08995 * 109.47385 * 239.99616 * 2 1 3 29 29 H 1.09008 * 109.46912 * 119.99913 * 2 1 3 30 30 H 1.08999 * 109.47101 * 59.99989 * 3 2 1 31 31 H 1.08995 * 109.46713 * 299.99853 * 3 2 1 32 32 H 0.96996 * 120.00052 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47531 * 59.99499 * 15 13 4 34 34 H 1.09006 * 109.47035 * 299.99137 * 15 13 4 35 35 H 1.08000 * 119.93168 * 0.02562 * 17 16 15 36 36 H 1.07997 * 120.07502 * 179.97438 * 18 17 16 37 37 H 0.96996 * 119.99987 * 0.02562 * 21 20 19 38 38 H 0.96996 * 119.99814 * 179.72406 * 21 20 19 39 39 H 1.08005 * 120.07315 * 179.72382 * 23 19 18 40 40 H 1.07994 * 119.92778 * 180.26802 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.5513 1.1831 6 1 5.1328 1.0399 1.3101 7 6 3.6714 2.3195 2.2184 8 7 2.8003 3.2687 1.9594 9 14 4.2125 2.0029 3.9781 10 1 5.6805 2.1981 4.0872 11 1 3.5186 2.9503 4.8872 12 1 3.8687 0.6092 4.3585 13 6 4.1794 1.3354 -1.1614 14 8 5.3923 1.3357 -1.1610 15 6 3.4264 1.2163 -2.4614 16 6 4.4062 1.1117 -3.6017 17 6 4.8539 -0.1310 -4.0132 18 6 5.7504 -0.2338 -5.0567 19 6 6.2062 0.9196 -5.6972 20 6 7.1674 0.8170 -6.8159 21 7 7.6052 1.9326 -7.4327 22 8 7.5628 -0.2734 -7.1793 23 6 5.7550 2.1705 -5.2733 24 6 4.8540 2.2590 -4.2323 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.4379 3.8047 2.6820 33 1 2.8001 2.0975 -2.6006 34 1 2.7994 0.3249 -2.4378 35 1 4.5001 -1.0227 -3.5170 36 1 6.0995 -1.2043 -5.3768 37 1 7.2899 2.8028 -7.1424 38 1 8.2389 1.8656 -8.1639 39 1 6.1072 3.0670 -5.7618 40 1 4.5007 3.2260 -3.9061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277514593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:29 Heat of formation + Delta-G solvation = -77.582173 kcal Electronic energy + Delta-G solvation = -22647.622467 eV Core-core repulsion = 19232.987859 eV Total energy + Delta-G solvation = -3414.634609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24058 -40.48187 -39.11048 -37.06326 -35.00024 -34.58759 -33.44455 -32.94814 -31.85791 -29.32679 -27.41649 -26.16914 -24.11643 -23.62747 -22.43650 -21.56901 -20.55552 -19.14476 -18.77686 -17.87526 -17.82520 -16.80970 -16.50497 -16.24486 -16.00342 -15.82966 -15.72252 -15.35236 -15.25937 -14.62407 -14.51608 -14.22562 -14.03336 -13.47212 -13.34135 -13.17608 -13.02276 -12.77845 -12.71472 -12.48499 -12.18972 -12.08239 -11.95904 -11.94914 -11.47591 -11.21376 -10.84905 -10.75665 -10.40568 -9.92527 -9.69682 -9.42230 -8.32655 -6.01172 -0.16351 0.44520 1.38517 1.41824 1.51007 1.80518 2.07942 2.30901 2.53132 2.82439 3.02529 3.23508 3.72130 3.81709 3.93977 4.04430 4.12913 4.24285 4.30098 4.39688 4.45465 4.61096 4.64376 4.70328 4.80282 4.90424 5.03936 5.06025 5.18522 5.26293 5.33475 5.35735 5.44439 5.50817 5.62941 5.65198 5.84486 5.93326 6.23035 6.38698 6.56564 7.21496 7.26379 7.51910 8.11356 8.68722 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022062 B = 0.003708 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.858730 B = 7550.110833 C = 8183.853737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.100 3.900 4 N -0.453 5.453 5 C -0.342 4.342 6 H 0.060 0.940 7 C 0.008 3.992 8 N -0.884 5.884 9 Si 0.974 3.026 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.267 1.267 13 C 0.449 3.551 14 O -0.625 6.625 15 C -0.093 4.093 16 C -0.034 4.034 17 C -0.127 4.127 18 C -0.070 4.070 19 C -0.164 4.164 20 C 0.567 3.433 21 N -0.828 5.828 22 O -0.590 6.590 23 C -0.072 4.072 24 C -0.127 4.127 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.274 0.726 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.417 0.583 38 H 0.414 0.586 39 H 0.164 0.836 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 0.137 -13.073 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C -0.023 4.023 4 N -0.172 5.172 5 C -0.470 4.470 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.522 5.522 9 Si 0.798 3.202 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.192 1.192 13 C 0.239 3.761 14 O -0.511 6.511 15 C -0.132 4.132 16 C -0.035 4.035 17 C -0.145 4.145 18 C -0.089 4.089 19 C -0.167 4.167 20 C 0.353 3.647 21 N -0.392 5.392 22 O -0.471 6.471 23 C -0.090 4.090 24 C -0.145 4.145 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.249 0.751 38 H 0.246 0.754 39 H 0.182 0.818 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.050 -0.427 -13.055 13.414 hybrid contribution 0.565 0.287 1.076 1.248 sum -2.486 -0.140 -11.980 12.236 Atomic orbital electron populations 1.21631 0.93349 1.02324 1.02242 1.21892 0.97374 0.96753 1.01170 1.21788 0.79882 0.96702 1.03917 1.43777 1.06089 1.62828 1.04476 1.19315 1.06892 1.29746 0.91080 0.92191 1.25940 0.97188 0.93014 1.03357 1.69962 1.31189 1.16873 1.34144 0.85304 0.78288 0.78684 0.77961 1.20501 1.19486 1.19169 1.21019 0.87867 0.81322 0.85923 1.90509 1.16273 1.56681 1.87683 1.20739 0.97240 1.05851 0.89381 1.19843 0.95771 0.94072 0.93768 1.21102 0.98444 0.97739 0.97218 1.21268 0.94775 0.98685 0.94154 1.19931 1.02016 0.95099 0.99655 1.18343 0.80178 0.84312 0.81818 1.43532 1.48701 1.08749 1.38233 1.90769 1.60264 1.29004 1.67104 1.21499 0.95005 0.96828 0.95712 1.21216 0.98380 0.98507 0.96433 0.91264 0.91362 0.93310 0.91987 0.94022 0.89234 0.91348 0.91664 0.87038 0.86942 0.85004 0.85065 0.75074 0.75364 0.81813 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.13 -4.43 6.17 30.59 0.19 -4.24 16 3 C 0.10 4.08 4.72 86.38 0.41 4.49 16 4 N -0.45 -22.47 2.56 -635.54 -1.63 -24.09 16 5 C -0.34 -19.19 8.98 84.04 0.75 -18.43 16 6 H 0.06 3.65 7.70 -2.91 -0.02 3.63 16 7 C 0.01 0.41 4.92 84.93 0.42 0.83 16 8 N -0.88 -46.25 11.33 21.66 0.25 -46.00 16 9 Si 0.97 41.88 29.61 68.60 2.03 43.91 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 13 C 0.45 21.31 7.59 87.66 0.66 21.98 16 14 O -0.62 -35.25 15.86 -3.06 -0.05 -35.30 16 15 C -0.09 -3.12 4.43 29.10 0.13 -2.99 16 16 C -0.03 -1.09 4.38 -19.81 -0.09 -1.18 16 17 C -0.13 -3.97 9.68 22.23 0.22 -3.76 16 18 C -0.07 -2.11 9.60 22.53 0.22 -1.90 16 19 C -0.16 -4.47 5.87 -20.09 -0.12 -4.58 16 20 C 0.57 14.69 8.05 86.79 0.70 15.39 16 21 N -0.83 -12.50 8.82 -175.60 -1.55 -14.05 16 22 O -0.59 -20.05 17.18 -3.88 -0.07 -20.12 16 23 C -0.07 -1.69 9.54 22.53 0.21 -1.47 16 24 C -0.13 -3.61 9.68 22.23 0.22 -3.39 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.89 6.60 -2.39 -0.02 1.87 16 29 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.09 4.13 5.34 -2.39 -0.01 4.12 16 31 H 0.07 2.43 6.66 -2.39 -0.02 2.42 16 32 H 0.27 13.40 8.31 -92.71 -0.77 12.62 16 33 H 0.11 3.29 7.35 -2.39 -0.02 3.27 16 34 H 0.11 3.23 6.48 -2.38 -0.02 3.22 16 35 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.13 3.88 7.65 -2.91 -0.02 3.86 16 37 H 0.42 3.73 6.86 -92.71 -0.64 3.10 16 38 H 0.41 4.84 8.93 -92.71 -0.83 4.01 16 39 H 0.16 2.28 6.41 -2.91 -0.02 2.26 16 40 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -75.76 337.16 3.24 -72.52 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -0.38 Total: 25.14 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 4.63 Total: -2.02 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -2.93 Total: -84.14 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -0.12 Total: -55.42 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -75.76 3.24 -72.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277514593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.059 kcal (2) G-P(sol) polarization free energy of solvation -75.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds