Wall clock time and date at job start Tue Mar 31 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09004 * 109.46930 * 305.00026 * 3 2 1 5 5 C 1.50703 * 109.47292 * 185.00051 * 3 2 1 6 6 H 1.07994 * 119.99399 * 240.00067 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 N 1.46506 * 109.47035 * 64.99796 * 3 2 1 14 14 C 1.34767 * 120.00003 * 274.99925 * 13 3 2 15 15 O 1.21281 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99889 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.38358 * 119.85339 * 269.73032 * 17 16 14 19 19 C 1.37964 * 120.14247 * 179.72375 * 18 17 16 20 20 C 1.39574 * 119.85286 * 0.54809 * 19 18 17 21 21 C 1.47844 * 120.14477 * 179.70443 * 20 19 18 22 22 N 1.34773 * 119.99735 * 0.02562 * 21 20 19 23 23 O 1.21548 * 119.99925 * 180.02562 * 21 20 19 24 24 C 1.39577 * 119.71231 * 359.72511 * 20 19 18 25 25 C 1.37958 * 119.85221 * 0.02562 * 24 20 19 26 26 H 1.08988 * 109.47502 * 60.00190 * 1 2 3 27 27 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47116 * 299.99803 * 1 2 3 29 29 H 1.08997 * 109.47159 * 240.00180 * 2 1 3 30 30 H 1.09005 * 109.47284 * 119.99696 * 2 1 3 31 31 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 32 32 H 0.96996 * 119.99678 * 95.00711 * 13 3 2 33 33 H 1.08994 * 109.47394 * 300.00422 * 16 14 13 34 34 H 1.09001 * 109.46828 * 60.00478 * 16 14 13 35 35 H 1.08000 * 119.92560 * 359.97438 * 18 17 16 36 36 H 1.08002 * 120.07016 * 180.25073 * 19 18 17 37 37 H 0.96994 * 120.00656 * 359.97438 * 22 21 20 38 38 H 0.97000 * 120.00237 * 180.02562 * 22 21 20 39 39 H 1.07995 * 120.07681 * 179.97438 * 24 20 19 40 40 H 1.07995 * 119.93187 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1475 -0.2349 11 1 6.3977 0.2179 -2.6510 12 1 6.4993 2.2817 -1.3822 13 7 1.6523 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 6 -1.3618 3.8851 2.5235 18 6 -1.5556 5.1756 2.0637 19 6 -2.8330 5.6809 1.9357 20 6 -3.9305 4.8911 2.2821 21 6 -5.3018 5.4284 2.1536 22 7 -5.4943 6.6831 1.7008 23 8 -6.2556 4.7385 2.4564 24 6 -3.7276 3.5921 2.7506 25 6 -2.4453 3.0972 2.8690 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0603 -2.9502 32 1 2.2719 2.1233 1.9977 33 1 0.0672 2.6130 3.4685 34 1 0.7275 4.1530 2.8679 35 1 -0.7053 5.7873 1.8006 36 1 -2.9832 6.6870 1.5729 37 1 -4.7332 7.2338 1.4595 38 1 -6.3940 7.0358 1.6169 39 1 -4.5725 2.9761 3.0207 40 1 -2.2869 2.0924 3.2318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277905030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:41 Heat of formation + Delta-G solvation = -64.184677 kcal Electronic energy + Delta-G solvation = -22443.981821 eV Core-core repulsion = 19029.928171 eV Total energy + Delta-G solvation = -3414.053650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26799 -39.23620 -38.03998 -35.10213 -34.08636 -32.71435 -32.29895 -30.94966 -30.89255 -28.16691 -26.66998 -23.54049 -22.76534 -22.71553 -20.74746 -20.07250 -19.32436 -18.34798 -17.15545 -17.00566 -15.91404 -15.54284 -15.36725 -15.12519 -14.95055 -14.86054 -14.31739 -14.16781 -13.62173 -13.36270 -13.16016 -12.70267 -12.54495 -12.27390 -11.76125 -11.61570 -11.37814 -11.25411 -11.03380 -11.00586 -10.83063 -10.34768 -10.23024 -10.17686 -9.94331 -9.64263 -9.18349 -9.05735 -9.00437 -8.68676 -8.51040 -7.83748 -6.14218 -4.24091 0.77560 1.36754 2.75003 3.23259 3.29062 3.29649 3.31711 3.37933 3.75152 4.18638 4.39859 4.59532 4.67302 4.80505 4.92044 5.16780 5.24870 5.31485 5.52240 5.57186 5.60291 5.83238 5.96456 6.18886 6.27103 6.38636 6.44850 6.52982 6.55306 6.65429 6.84172 7.02620 7.10733 7.19054 7.35736 7.44096 7.59992 7.71641 7.88417 8.05230 8.16763 8.64894 8.75672 9.12317 9.43550 10.90950 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032653 B = 0.003071 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.304331 B = 9114.990092 C = 9317.401279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.709 5.709 14 C 0.502 3.498 15 O -0.540 6.540 16 C -0.115 4.115 17 C -0.021 4.021 18 C -0.115 4.115 19 C -0.084 4.084 20 C -0.151 4.151 21 C 0.567 3.433 22 N -0.853 5.853 23 O -0.545 6.545 24 C -0.056 4.056 25 C -0.114 4.114 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.388 0.612 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.401 0.599 38 H 0.403 0.597 39 H 0.134 0.866 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 10.828 10.627 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.286 3.714 15 O -0.419 6.419 16 C -0.155 4.155 17 C -0.021 4.021 18 C -0.133 4.133 19 C -0.102 4.102 20 C -0.154 4.154 21 C 0.354 3.646 22 N -0.417 5.417 23 O -0.423 6.423 24 C -0.075 4.075 25 C -0.132 4.132 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.231 0.769 38 H 0.234 0.766 39 H 0.152 0.848 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.352 10.111 9.970 17.573 hybrid contribution 1.415 0.406 -0.014 1.472 sum -8.937 10.517 9.956 17.018 Atomic orbital electron populations 1.21831 0.98310 0.98006 1.01224 1.21936 0.92611 0.99855 1.02237 1.18766 0.94095 0.89152 0.81019 0.93378 1.21198 0.90757 1.39152 1.06294 0.92165 1.24889 0.98574 0.94808 0.95403 1.69886 1.35221 1.37495 1.09312 0.86523 0.84895 0.78292 0.77472 1.20165 1.21134 1.20210 1.46499 1.14581 1.56082 1.18578 1.20125 0.82909 0.79660 0.88702 1.90709 1.51250 1.59501 1.40394 1.20872 0.94281 1.01822 0.98542 1.19621 0.94422 0.93440 0.94661 1.20937 0.96984 0.95613 0.99743 1.21151 0.92173 0.98937 0.97985 1.19767 0.92235 0.96448 1.06999 1.18350 0.89018 0.81378 0.75878 1.43756 1.12524 1.15723 1.69714 1.90798 1.43089 1.58441 1.49957 1.21184 0.97403 0.93799 0.95070 1.21006 0.91698 0.99755 1.00762 0.93200 0.95912 0.94288 0.88351 0.95078 0.92491 0.77988 0.88252 0.88200 0.85413 0.85883 0.76935 0.76637 0.84821 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.61 2.24 -69.08 -0.15 6.45 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.40 11.29 55.43 0.63 -23.78 16 9 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -13.73 5.02 -54.92 -0.28 -14.01 16 14 C 0.50 9.10 6.39 -10.99 -0.07 9.03 16 15 O -0.54 -11.95 13.17 5.56 0.07 -11.88 16 16 C -0.12 -1.44 5.82 -29.03 -0.17 -1.61 16 17 C -0.02 -0.27 4.38 -104.53 -0.46 -0.73 16 18 C -0.11 -1.37 9.68 -39.64 -0.38 -1.75 16 19 C -0.08 -0.89 9.54 -39.18 -0.37 -1.27 16 20 C -0.15 -1.87 5.87 -104.97 -0.62 -2.49 16 21 C 0.57 6.95 8.05 -12.33 -0.10 6.85 16 22 N -0.85 -6.52 8.82 30.53 0.27 -6.25 16 23 O -0.54 -8.69 17.18 5.32 0.09 -8.60 16 24 C -0.06 -0.73 9.60 -39.18 -0.38 -1.11 16 25 C -0.11 -1.48 9.68 -39.64 -0.38 -1.87 16 26 H 0.05 1.19 7.85 -51.94 -0.41 0.78 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 29 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.39 6.40 8.54 -40.82 -0.35 6.05 16 33 H 0.10 1.02 8.08 -51.93 -0.42 0.61 16 34 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.12 0.86 6.41 -52.49 -0.34 0.53 16 37 H 0.40 1.99 6.86 -40.82 -0.28 1.71 16 38 H 0.40 2.46 8.93 -40.82 -0.36 2.10 16 39 H 0.13 1.70 7.65 -52.49 -0.40 1.30 16 40 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -33.32 335.61 -7.69 -41.02 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.21 Total: 10.00 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.31 Total: -6.77 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.62 Total: -44.03 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.16 Total: -20.48 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.32 -7.69 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277905030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.167 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds