Wall clock time and date at job start Tue Mar 31 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09004 * 109.46930 * 305.00026 * 3 2 1 5 5 C 1.50703 * 109.47292 * 185.00051 * 3 2 1 6 6 H 1.07994 * 119.99399 * 240.00067 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 N 1.46506 * 109.47035 * 64.99796 * 3 2 1 14 14 C 1.34767 * 120.00003 * 274.99925 * 13 3 2 15 15 O 1.21281 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99889 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.38358 * 119.85339 * 269.73032 * 17 16 14 19 19 C 1.37964 * 120.14247 * 179.72375 * 18 17 16 20 20 C 1.39574 * 119.85286 * 0.54809 * 19 18 17 21 21 C 1.47844 * 120.14477 * 179.70443 * 20 19 18 22 22 N 1.34773 * 119.99735 * 0.02562 * 21 20 19 23 23 O 1.21548 * 119.99925 * 180.02562 * 21 20 19 24 24 C 1.39577 * 119.71231 * 359.72511 * 20 19 18 25 25 C 1.37958 * 119.85221 * 0.02562 * 24 20 19 26 26 H 1.08988 * 109.47502 * 60.00190 * 1 2 3 27 27 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47116 * 299.99803 * 1 2 3 29 29 H 1.08997 * 109.47159 * 240.00180 * 2 1 3 30 30 H 1.09005 * 109.47284 * 119.99696 * 2 1 3 31 31 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 32 32 H 0.96996 * 119.99678 * 95.00711 * 13 3 2 33 33 H 1.08994 * 109.47394 * 300.00422 * 16 14 13 34 34 H 1.09001 * 109.46828 * 60.00478 * 16 14 13 35 35 H 1.08000 * 119.92560 * 359.97438 * 18 17 16 36 36 H 1.08002 * 120.07016 * 180.25073 * 19 18 17 37 37 H 0.96994 * 120.00656 * 359.97438 * 22 21 20 38 38 H 0.97000 * 120.00237 * 180.02562 * 22 21 20 39 39 H 1.07995 * 120.07681 * 179.97438 * 24 20 19 40 40 H 1.07995 * 119.93187 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1475 -0.2349 11 1 6.3977 0.2179 -2.6510 12 1 6.4993 2.2817 -1.3822 13 7 1.6523 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 6 -1.3618 3.8851 2.5235 18 6 -1.5556 5.1756 2.0637 19 6 -2.8330 5.6809 1.9357 20 6 -3.9305 4.8911 2.2821 21 6 -5.3018 5.4284 2.1536 22 7 -5.4943 6.6831 1.7008 23 8 -6.2556 4.7385 2.4564 24 6 -3.7276 3.5921 2.7506 25 6 -2.4453 3.0972 2.8690 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0603 -2.9502 32 1 2.2719 2.1233 1.9977 33 1 0.0672 2.6130 3.4685 34 1 0.7275 4.1530 2.8679 35 1 -0.7053 5.7873 1.8006 36 1 -2.9832 6.6870 1.5729 37 1 -4.7332 7.2338 1.4595 38 1 -6.3940 7.0358 1.6169 39 1 -4.5725 2.9761 3.0207 40 1 -2.2869 2.0924 3.2318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277905030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:41 Heat of formation + Delta-G solvation = -88.660180 kcal Electronic energy + Delta-G solvation = -22445.043158 eV Core-core repulsion = 19029.928171 eV Total energy + Delta-G solvation = -3415.114987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26847 -40.57488 -39.13876 -36.87042 -34.98568 -34.26298 -33.69056 -32.59932 -31.84938 -29.52294 -28.29084 -25.11495 -24.12569 -23.62519 -22.12159 -21.33461 -20.94699 -19.20873 -18.82073 -17.88634 -17.41183 -17.17294 -16.57084 -16.36911 -16.05735 -15.84192 -15.74910 -15.54773 -14.72568 -14.62981 -14.49113 -14.24547 -13.96639 -13.52945 -13.30804 -13.12508 -12.93360 -12.74368 -12.61108 -12.58639 -12.16803 -12.01125 -11.94375 -11.55648 -11.22019 -11.02894 -10.76736 -10.64887 -10.47749 -9.91737 -9.71377 -9.54962 -8.13538 -6.30850 -0.17381 0.45353 1.46517 1.47829 1.55569 1.79158 1.96719 2.39320 2.52967 2.69091 3.03641 3.16173 3.67164 3.82927 3.93986 4.04614 4.27067 4.35565 4.43683 4.51319 4.59588 4.65613 4.69382 4.78717 4.90635 5.06843 5.09699 5.27232 5.29390 5.37055 5.46697 5.59270 5.60135 5.68376 5.83424 5.83991 5.93845 5.98609 6.20870 6.38610 6.78736 7.08960 7.25830 7.37344 7.69904 8.91339 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032653 B = 0.003071 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.304331 B = 9114.990092 C = 9317.401279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.707 5.707 14 C 0.499 3.501 15 O -0.584 6.584 16 C -0.100 4.100 17 C -0.038 4.038 18 C -0.123 4.123 19 C -0.076 4.076 20 C -0.163 4.163 21 C 0.563 3.437 22 N -0.828 5.828 23 O -0.591 6.591 24 C -0.075 4.075 25 C -0.124 4.124 26 H 0.022 0.978 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.405 0.595 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.162 0.838 37 H 0.417 0.583 38 H 0.413 0.587 39 H 0.127 0.873 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 12.447 12.146 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.215 1.215 12 H -0.195 1.195 13 N -0.357 5.357 14 C 0.286 3.714 15 O -0.465 6.465 16 C -0.139 4.139 17 C -0.039 4.039 18 C -0.141 4.141 19 C -0.095 4.095 20 C -0.166 4.166 21 C 0.350 3.650 22 N -0.393 5.393 23 O -0.473 6.473 24 C -0.094 4.094 25 C -0.142 4.142 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.240 0.760 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.164 0.836 36 H 0.179 0.821 37 H 0.249 0.751 38 H 0.246 0.754 39 H 0.145 0.855 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.217 11.792 11.524 18.889 hybrid contribution 1.006 -0.024 -0.512 1.129 sum -8.211 11.768 11.012 18.088 Atomic orbital electron populations 1.21664 0.97053 0.98898 1.00289 1.21787 0.93623 0.99476 1.01149 1.18288 0.93394 0.88981 0.81693 0.98597 1.21587 0.91611 1.38719 1.06581 0.90852 1.25771 1.03164 0.94502 0.95145 1.70053 1.37085 1.38487 1.09868 0.85458 0.79335 0.78465 0.77436 1.18940 1.21521 1.19545 1.46252 1.15773 1.56207 1.17447 1.21063 0.81602 0.78614 0.90127 1.90698 1.52304 1.60881 1.42599 1.20829 0.94576 1.02959 0.95571 1.19798 0.94491 0.94174 0.95421 1.21281 0.98127 0.95547 0.99176 1.21523 0.91109 1.00290 0.96529 1.19943 0.92952 0.96511 1.07160 1.18441 0.88467 0.82301 0.75777 1.43550 1.13919 1.14218 1.67585 1.90776 1.44217 1.59949 1.52353 1.21282 0.97463 0.94587 0.96023 1.21152 0.91750 1.00255 1.01081 0.95911 0.93996 0.93354 0.91374 0.94023 0.92734 0.76024 0.85457 0.85026 0.83607 0.82082 0.75060 0.75447 0.85532 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.51 71.98 0.61 -4.82 16 2 C -0.12 -5.87 5.45 30.60 0.17 -5.70 16 3 C 0.28 13.83 2.24 44.25 0.10 13.93 16 4 H 0.00 -0.23 7.58 -2.38 -0.02 -0.25 16 5 C -0.55 -27.97 8.73 25.60 0.22 -27.74 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 7 C 0.01 0.75 5.29 84.65 0.45 1.19 16 8 N -0.92 -51.98 11.29 21.45 0.24 -51.74 16 9 Si 0.97 41.16 29.54 68.60 2.03 43.18 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 N -0.71 -26.64 5.02 -446.08 -2.24 -28.88 16 14 C 0.50 17.48 6.39 87.66 0.56 18.04 16 15 O -0.58 -25.98 13.17 -3.03 -0.04 -26.02 16 16 C -0.10 -2.22 5.82 29.11 0.17 -2.05 16 17 C -0.04 -0.92 4.38 -19.80 -0.09 -1.01 16 18 C -0.12 -2.63 9.68 22.23 0.22 -2.41 16 19 C -0.08 -1.43 9.54 22.53 0.21 -1.22 16 20 C -0.16 -3.85 5.87 -20.09 -0.12 -3.97 16 21 C 0.56 13.34 8.05 86.79 0.70 14.03 16 22 N -0.83 -10.88 8.82 -175.61 -1.55 -12.43 16 23 O -0.59 -19.07 17.18 -3.87 -0.07 -19.14 16 24 C -0.07 -1.96 9.60 22.53 0.22 -1.74 16 25 C -0.12 -3.13 9.68 22.23 0.22 -2.92 16 26 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 2.03 5.64 -2.38 -0.01 2.02 16 29 H 0.07 3.74 5.95 -2.39 -0.01 3.72 16 30 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.40 12.45 8.54 -92.71 -0.79 11.66 16 33 H 0.13 2.16 8.08 -2.39 -0.02 2.14 16 34 H 0.13 2.13 8.08 -2.39 -0.02 2.11 16 35 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.16 1.62 6.41 -2.91 -0.02 1.61 16 37 H 0.42 2.81 6.86 -92.71 -0.64 2.17 16 38 H 0.41 4.21 8.93 -92.71 -0.83 3.38 16 39 H 0.13 3.38 7.65 -2.91 -0.02 3.36 16 40 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -75.39 335.61 0.85 -74.54 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -1.16 Total: 26.87 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 3.64 Total: -6.39 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -3.55 Total: -93.04 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.11 Total: -45.16 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -75.39 0.85 -74.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277905030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.123 kcal (2) G-P(sol) polarization free energy of solvation -75.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds