Wall clock time and date at job start Tue Mar 31 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47563 * 2 1 4 4 H 1.09003 * 115.54134 * 29.33378 * 3 2 1 5 5 C 1.52994 * 117.51968 * 243.63164 * 3 2 1 6 6 C 1.52998 * 117.50066 * 174.99943 * 3 2 1 7 7 H 1.08996 * 117.49873 * 0.02562 * 6 3 2 8 8 N 1.46504 * 117.49577 * 215.00170 * 6 3 2 9 9 C 1.34778 * 119.99514 * 154.72157 * 8 6 3 10 10 O 1.21586 * 119.99962 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99924 * 179.97438 * 9 8 6 12 12 C 1.39943 * 119.99622 * 174.75616 * 11 9 8 13 13 C 1.38955 * 120.03712 * 326.13257 * 12 11 9 14 14 C 1.38161 * 120.06323 * 179.79346 * 13 12 11 15 15 C 1.38163 * 120.13916 * 0.46533 * 14 13 12 16 16 C 1.38905 * 120.07527 * 359.78947 * 15 14 13 17 17 O 1.35746 * 120.03879 * 179.97438 * 16 15 14 18 18 C 1.34834 * 117.00005 * 185.89735 * 17 16 15 19 19 H 1.08003 * 120.00054 * 5.40877 * 18 17 16 20 20 C 1.38653 * 120.00179 * 185.40569 * 18 17 16 21 21 N 1.31557 * 119.99852 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47243 * 90.00061 * 22 20 18 24 24 H 1.48499 * 109.47148 * 210.00106 * 22 20 18 25 25 H 1.48498 * 109.46870 * 329.99656 * 22 20 18 26 26 C 1.38712 * 120.03208 * 146.41386 * 12 11 9 27 27 H 1.09001 * 109.47070 * 59.99458 * 1 2 3 28 28 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47132 * 299.99754 * 1 2 3 30 30 H 1.09005 * 109.47132 * 240.00246 * 2 1 3 31 31 H 1.08998 * 109.47456 * 120.00201 * 2 1 3 32 32 H 1.09001 * 117.49553 * 145.02897 * 5 3 2 33 33 H 1.08994 * 117.50206 * 0.02562 * 5 3 2 34 34 H 0.96991 * 120.00328 * 335.01033 * 8 6 3 35 35 H 0.96993 * 119.99805 * 354.76004 * 11 9 8 36 36 H 1.07998 * 119.96612 * 0.02854 * 13 12 11 37 37 H 1.08001 * 119.93019 * 180.23766 * 14 13 12 38 38 H 1.08006 * 119.96153 * 179.77279 * 15 14 13 39 39 H 0.96998 * 120.00155 * 179.97438 * 21 20 18 40 40 H 1.08004 * 120.06704 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1714 0.4818 5 6 2.8439 1.9080 -1.2157 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7718 0.1957 8 7 4.0097 2.8281 0.8703 9 6 5.2291 2.8239 1.4444 10 8 5.9478 1.8491 1.3378 11 7 5.6521 3.9007 2.1359 12 6 6.8701 3.8564 2.8236 13 6 7.2989 2.6684 3.4030 14 6 8.5033 2.6229 4.0784 15 6 9.2804 3.7600 4.1882 16 6 8.8549 4.9519 3.6157 17 8 9.6187 6.0688 3.7245 18 6 9.0933 7.2180 3.2541 19 1 8.0747 7.2391 2.8956 20 6 9.8606 8.3726 3.2306 21 7 11.1014 8.3468 3.6668 22 14 9.1324 9.9649 2.5795 23 1 8.4936 10.7093 3.6943 24 1 10.2101 10.7947 1.9836 25 1 8.1148 9.6563 1.5430 26 6 7.6479 4.9997 2.9325 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.7212 2.9434 -1.5337 33 1 3.0092 1.1868 -2.0160 34 1 3.4348 3.6043 0.9586 35 1 5.1123 4.7063 2.1569 36 1 6.6918 1.7788 3.3220 37 1 8.8363 1.6975 4.5246 38 1 10.2197 3.7221 4.7199 39 1 11.6383 9.1544 3.6501 40 1 7.3148 5.9253 2.4865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280970791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:58 Heat of formation + Delta-G solvation = -8.666297 kcal Electronic energy + Delta-G solvation = -21868.161024 eV Core-core repulsion = 18456.514832 eV Total energy + Delta-G solvation = -3411.646192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43986 -38.94929 -38.07603 -36.38294 -34.23563 -33.74790 -32.22930 -31.53151 -29.22468 -28.35087 -25.30245 -24.23603 -23.21538 -21.79151 -21.43526 -20.99590 -20.31657 -18.60390 -17.87587 -17.36799 -16.45220 -15.35796 -15.28963 -14.94953 -14.91204 -14.70285 -14.36394 -14.14009 -13.88528 -13.55711 -13.03991 -12.93816 -12.89593 -12.45892 -12.37365 -11.79721 -11.60990 -11.56189 -11.41561 -11.29938 -11.13534 -10.90564 -10.79781 -10.45671 -10.31630 -10.04653 -9.65542 -9.44845 -8.86963 -8.79072 -7.68977 -7.11798 -6.43823 -4.03444 2.06947 2.41375 2.58560 3.10360 3.12062 3.16852 3.17341 3.67357 3.96228 4.09875 4.41077 4.50952 4.62919 4.66479 4.82888 4.99714 5.11149 5.13595 5.30234 5.36623 5.49020 5.59230 5.65587 5.72204 5.75456 5.79091 5.99225 6.03212 6.10362 6.24803 6.27438 6.40041 6.57912 6.81104 7.02426 7.12056 7.28552 7.35682 7.44930 7.84787 7.99346 8.01633 8.61482 9.01568 9.72680 10.74345 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.003018 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.988917 B = 9274.848462 C =10321.906193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.161 4.161 4 H 0.106 0.894 5 C -0.192 4.192 6 C 0.108 3.892 7 H 0.139 0.861 8 N -0.719 5.719 9 C 0.707 3.293 10 O -0.568 6.568 11 N -0.681 5.681 12 C 0.199 3.801 13 C -0.205 4.205 14 C -0.062 4.062 15 C -0.202 4.202 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.258 4.258 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.397 0.603 35 H 0.402 0.598 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.270 0.730 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.222 -10.644 -6.488 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.181 4.181 4 H 0.124 0.876 5 C -0.231 4.231 6 C 0.001 3.999 7 H 0.157 0.843 8 N -0.372 5.372 9 C 0.407 3.593 10 O -0.444 6.444 11 N -0.328 5.328 12 C 0.105 3.895 13 C -0.226 4.226 14 C -0.081 4.081 15 C -0.222 4.222 16 C 0.115 3.885 17 O -0.080 6.080 18 C -0.468 4.468 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.279 4.279 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.230 0.770 35 H 0.237 0.763 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.147 -11.339 -6.470 22.355 hybrid contribution -1.039 1.776 -0.471 2.111 sum -19.186 -9.563 -6.941 22.533 Atomic orbital electron populations 1.21742 0.95390 1.01642 1.01859 1.21114 0.95974 0.93670 1.02383 1.22939 0.93986 0.98732 1.02406 0.87633 1.23658 1.04180 1.02819 0.92404 1.21528 0.93446 0.90594 0.94370 0.84323 1.44478 1.16699 1.18891 1.57122 1.15827 0.81521 0.83603 0.78311 1.90944 1.54925 1.33954 1.64552 1.42572 1.22269 1.15631 1.52316 1.17171 0.84545 0.94811 0.92978 1.20560 0.99679 0.97299 1.05032 1.20523 0.93587 0.96777 0.97241 1.20241 1.02610 0.91394 1.07938 1.19063 0.89463 0.88085 0.91913 1.84022 1.40019 1.13388 1.70573 1.21256 0.98262 0.84072 1.43175 0.89309 1.25273 0.95371 0.98891 0.96998 1.70035 1.07387 1.29193 1.43122 0.85728 0.78471 0.80346 0.78936 1.19922 1.20276 1.19347 1.20781 0.97615 0.98722 1.10829 0.92653 0.92652 0.92707 0.91555 0.91325 0.88593 0.87975 0.76954 0.76318 0.86262 0.86623 0.86392 0.92043 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.87 37.15 0.37 -0.49 16 2 C -0.09 -0.63 6.22 -26.73 -0.17 -0.79 16 3 C -0.16 -1.19 5.66 -90.62 -0.51 -1.70 16 4 H 0.11 0.71 8.07 -51.93 -0.42 0.29 16 5 C -0.19 -1.49 10.10 -26.73 -0.27 -1.76 16 6 C 0.11 1.07 6.15 -67.93 -0.42 0.65 16 7 H 0.14 1.63 7.40 -51.93 -0.38 1.24 16 8 N -0.72 -7.85 5.57 -58.67 -0.33 -8.18 16 9 C 0.71 10.93 8.30 -86.91 -0.72 10.21 16 10 O -0.57 -10.99 13.63 5.29 0.07 -10.91 16 11 N -0.68 -10.51 5.35 -14.24 -0.08 -10.59 16 12 C 0.20 3.88 6.27 -83.71 -0.52 3.35 16 13 C -0.20 -4.03 8.65 -39.34 -0.34 -4.37 16 14 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 15 C -0.20 -4.39 9.99 -39.36 -0.39 -4.79 16 16 C 0.17 4.13 6.64 -39.14 -0.26 3.87 16 17 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 18 C -0.39 -10.86 9.44 30.89 0.29 -10.57 16 19 H 0.09 2.26 5.30 -52.48 -0.28 1.98 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 22 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 C -0.26 -5.64 9.04 -39.21 -0.35 -5.99 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.42 7.88 -51.93 -0.41 0.01 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.72 8.03 -51.93 -0.42 0.31 16 34 H 0.40 3.14 8.85 -40.82 -0.36 2.78 16 35 H 0.40 4.82 8.83 -40.82 -0.36 4.45 16 36 H 0.12 2.31 6.45 -52.49 -0.34 1.98 16 37 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.13 2.76 5.71 -52.48 -0.30 2.46 16 LS Contribution 342.36 15.07 5.16 5.16 Total: -1.00 -33.33 342.36 -8.59 -41.92 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.36 Total: 9.82 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -3.80 Total: -12.98 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.36 Total: -43.28 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.07 Total: -15.96 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.33 -8.59 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280970791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.259 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds