Wall clock time and date at job start Tue Mar 31 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47563 * 2 1 4 4 H 1.09003 * 115.54134 * 29.33378 * 3 2 1 5 5 C 1.52994 * 117.51968 * 243.63164 * 3 2 1 6 6 C 1.52998 * 117.50066 * 174.99943 * 3 2 1 7 7 H 1.08996 * 117.49873 * 0.02562 * 6 3 2 8 8 N 1.46504 * 117.49577 * 215.00170 * 6 3 2 9 9 C 1.34778 * 119.99514 * 154.72157 * 8 6 3 10 10 O 1.21586 * 119.99962 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99924 * 179.97438 * 9 8 6 12 12 C 1.39943 * 119.99622 * 174.75616 * 11 9 8 13 13 C 1.38955 * 120.03712 * 326.13257 * 12 11 9 14 14 C 1.38161 * 120.06323 * 179.79346 * 13 12 11 15 15 C 1.38163 * 120.13916 * 0.46533 * 14 13 12 16 16 C 1.38905 * 120.07527 * 359.78947 * 15 14 13 17 17 O 1.35746 * 120.03879 * 179.97438 * 16 15 14 18 18 C 1.34834 * 117.00005 * 185.89735 * 17 16 15 19 19 H 1.08003 * 120.00054 * 5.40877 * 18 17 16 20 20 C 1.38653 * 120.00179 * 185.40569 * 18 17 16 21 21 N 1.31557 * 119.99852 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47243 * 90.00061 * 22 20 18 24 24 H 1.48499 * 109.47148 * 210.00106 * 22 20 18 25 25 H 1.48498 * 109.46870 * 329.99656 * 22 20 18 26 26 C 1.38712 * 120.03208 * 146.41386 * 12 11 9 27 27 H 1.09001 * 109.47070 * 59.99458 * 1 2 3 28 28 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47132 * 299.99754 * 1 2 3 30 30 H 1.09005 * 109.47132 * 240.00246 * 2 1 3 31 31 H 1.08998 * 109.47456 * 120.00201 * 2 1 3 32 32 H 1.09001 * 117.49553 * 145.02897 * 5 3 2 33 33 H 1.08994 * 117.50206 * 0.02562 * 5 3 2 34 34 H 0.96991 * 120.00328 * 335.01033 * 8 6 3 35 35 H 0.96993 * 119.99805 * 354.76004 * 11 9 8 36 36 H 1.07998 * 119.96612 * 0.02854 * 13 12 11 37 37 H 1.08001 * 119.93019 * 180.23766 * 14 13 12 38 38 H 1.08006 * 119.96153 * 179.77279 * 15 14 13 39 39 H 0.96998 * 120.00155 * 179.97438 * 21 20 18 40 40 H 1.08004 * 120.06704 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1714 0.4818 5 6 2.8439 1.9080 -1.2157 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7718 0.1957 8 7 4.0097 2.8281 0.8703 9 6 5.2291 2.8239 1.4444 10 8 5.9478 1.8491 1.3378 11 7 5.6521 3.9007 2.1359 12 6 6.8701 3.8564 2.8236 13 6 7.2989 2.6684 3.4030 14 6 8.5033 2.6229 4.0784 15 6 9.2804 3.7600 4.1882 16 6 8.8549 4.9519 3.6157 17 8 9.6187 6.0688 3.7245 18 6 9.0933 7.2180 3.2541 19 1 8.0747 7.2391 2.8956 20 6 9.8606 8.3726 3.2306 21 7 11.1014 8.3468 3.6668 22 14 9.1324 9.9649 2.5795 23 1 8.4936 10.7093 3.6943 24 1 10.2101 10.7947 1.9836 25 1 8.1148 9.6563 1.5430 26 6 7.6479 4.9997 2.9325 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.7212 2.9434 -1.5337 33 1 3.0092 1.1868 -2.0160 34 1 3.4348 3.6043 0.9586 35 1 5.1123 4.7063 2.1569 36 1 6.6918 1.7788 3.3220 37 1 8.8363 1.6975 4.5246 38 1 10.2197 3.7221 4.7199 39 1 11.6383 9.1544 3.6501 40 1 7.3148 5.9253 2.4865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280970791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:58 Heat of formation + Delta-G solvation = -30.662825 kcal Electronic energy + Delta-G solvation = -21869.114865 eV Core-core repulsion = 18456.514832 eV Total energy + Delta-G solvation = -3412.600033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73825 -40.52885 -39.10471 -37.99364 -35.67072 -34.70629 -34.18398 -32.27981 -30.87084 -29.97519 -27.29205 -24.84172 -24.33836 -23.49168 -22.55385 -21.93151 -21.36261 -20.08751 -19.44292 -19.00928 -17.61361 -16.89623 -16.74171 -16.40415 -16.01594 -15.81486 -15.64927 -15.46828 -15.29781 -15.13525 -14.56703 -14.23045 -13.67633 -13.58213 -13.53154 -13.21393 -12.94075 -12.78903 -12.61880 -12.47799 -12.14135 -12.11617 -12.09183 -11.92861 -11.52190 -11.36216 -11.14951 -10.92304 -10.72525 -9.77378 -9.30924 -8.83425 -8.45192 -6.13841 0.44975 0.71458 1.36513 1.44716 1.46650 1.54076 1.95531 2.18869 2.84389 2.93799 3.04804 3.18981 3.50626 3.74013 3.85887 4.03076 4.12073 4.29421 4.33968 4.44930 4.50180 4.55097 4.64635 4.72259 4.81547 4.84762 4.96699 5.04134 5.12214 5.18709 5.22274 5.29431 5.33457 5.46060 5.48392 5.54143 5.68417 5.69780 5.94354 6.02912 6.21138 6.90899 6.99144 7.41452 7.79015 8.77899 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.003018 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.988917 B = 9274.848462 C =10321.906193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.139 4.139 4 H 0.118 0.882 5 C -0.179 4.179 6 C 0.076 3.924 7 H 0.117 0.883 8 N -0.697 5.697 9 C 0.704 3.296 10 O -0.609 6.609 11 N -0.673 5.673 12 C 0.206 3.794 13 C -0.200 4.200 14 C -0.050 4.050 15 C -0.215 4.215 16 C 0.135 3.865 17 O -0.226 6.226 18 C -0.412 4.412 19 H 0.103 0.897 20 C -0.024 4.024 21 N -0.920 5.920 22 Si 1.019 2.981 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.251 1.251 26 C -0.261 4.261 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.414 0.586 35 H 0.420 0.580 36 H 0.129 0.871 37 H 0.154 0.846 38 H 0.120 0.880 39 H 0.272 0.728 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.438 -11.020 -7.692 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.159 4.159 4 H 0.136 0.864 5 C -0.217 4.217 6 C -0.030 4.030 7 H 0.135 0.865 8 N -0.351 5.351 9 C 0.405 3.595 10 O -0.488 6.488 11 N -0.321 5.321 12 C 0.111 3.889 13 C -0.221 4.221 14 C -0.069 4.069 15 C -0.235 4.235 16 C 0.084 3.916 17 O -0.132 6.132 18 C -0.488 4.488 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.839 3.161 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.175 1.175 26 C -0.283 4.283 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.251 0.749 35 H 0.258 0.742 36 H 0.146 0.854 37 H 0.171 0.829 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.468 -11.739 -7.697 25.650 hybrid contribution -0.199 1.582 -0.119 1.599 sum -21.667 -10.157 -7.817 25.174 Atomic orbital electron populations 1.21724 0.94409 1.02124 1.02148 1.21157 0.96776 0.93184 1.02298 1.22991 0.91989 0.99448 1.01455 0.86356 1.23728 1.02531 1.03661 0.91826 1.21613 0.95024 0.89737 0.96657 0.86525 1.44285 1.15138 1.19864 1.55801 1.15964 0.82424 0.82790 0.78301 1.90915 1.56447 1.35364 1.66109 1.42409 1.21128 1.16722 1.51834 1.17173 0.85518 0.93881 0.92350 1.20856 0.99724 0.97536 1.03965 1.20907 0.92732 0.97221 0.96033 1.20471 1.03320 0.91499 1.08209 1.19584 0.90507 0.88082 0.93443 1.83988 1.41862 1.14593 1.72783 1.21803 0.99194 0.84535 1.43290 0.87935 1.26605 0.95726 1.02778 0.97010 1.70189 1.09377 1.30519 1.45724 0.84577 0.77937 0.74867 0.78767 1.18716 1.19918 1.17480 1.20793 0.97167 0.99627 1.10668 0.92173 0.92177 0.92573 0.91220 0.91981 0.87604 0.87273 0.74903 0.74238 0.85365 0.82850 0.86214 0.91868 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.87 71.98 0.71 -0.59 16 2 C -0.10 -1.07 6.22 30.59 0.19 -0.88 16 3 C -0.14 -1.67 5.66 -10.80 -0.06 -1.73 16 4 H 0.12 1.16 8.07 -2.39 -0.02 1.15 16 5 C -0.18 -2.28 10.10 30.59 0.31 -1.97 16 6 C 0.08 1.37 6.15 44.99 0.28 1.65 16 7 H 0.12 2.68 7.40 -2.39 -0.02 2.66 16 8 N -0.70 -13.65 5.57 -457.81 -2.55 -16.20 16 9 C 0.70 20.60 8.30 179.05 1.49 22.08 16 10 O -0.61 -22.95 13.63 -3.99 -0.05 -23.01 16 11 N -0.67 -19.53 5.35 -317.22 -1.70 -21.23 16 12 C 0.21 7.82 6.27 38.13 0.24 8.06 16 13 C -0.20 -7.54 8.65 22.42 0.19 -7.35 16 14 C -0.05 -1.86 10.03 22.23 0.22 -1.64 16 15 C -0.22 -9.46 9.99 22.41 0.22 -9.23 16 16 C 0.14 6.80 6.64 22.56 0.15 6.95 16 17 O -0.23 -13.53 9.76 -22.74 -0.22 -13.76 16 18 C -0.41 -23.61 9.44 67.92 0.64 -22.97 16 19 H 0.10 5.31 5.30 -2.91 -0.02 5.29 16 20 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 21 N -0.92 -56.18 13.67 21.61 0.30 -55.88 16 22 Si 1.02 41.99 29.55 68.60 2.03 44.01 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 26 C -0.26 -11.45 9.04 22.51 0.20 -11.24 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.07 0.73 7.88 -2.38 -0.02 0.72 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.26 8.03 -2.39 -0.02 1.24 16 34 H 0.41 5.26 8.85 -92.71 -0.82 4.44 16 35 H 0.42 9.08 8.83 -92.71 -0.82 8.26 16 36 H 0.13 4.71 6.45 -2.91 -0.02 4.69 16 37 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.13 5.55 5.71 -2.91 -0.02 5.54 16 Total: -1.00 -75.54 342.36 2.49 -73.05 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.56 Total: 32.74 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 5.25 Total: -19.73 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -3.95 Total: -93.30 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.28 Total: -36.76 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -75.54 2.49 -73.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280970791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.384 kcal (2) G-P(sol) polarization free energy of solvation -75.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds