Wall clock time and date at job start Tue Mar 31 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46973 * 2 1 4 4 C 1.53002 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47115 * 54.99977 * 4 3 2 6 6 N 1.46504 * 109.47119 * 295.00455 * 4 3 2 7 7 C 1.34774 * 120.00075 * 154.72936 * 6 4 3 8 8 O 1.21585 * 119.99833 * 359.97438 * 7 6 4 9 9 C 1.47645 * 120.00124 * 179.97438 * 7 6 4 10 10 C 1.40015 * 119.89294 * 359.72830 * 9 7 6 11 11 C 1.36314 * 120.10552 * 179.71884 * 10 9 7 12 12 C 1.40894 * 119.88937 * 0.57290 * 11 10 9 13 13 C 1.41116 * 120.09996 * 179.67966 * 12 11 10 14 14 H 1.08004 * 119.99491 * 204.65151 * 13 12 11 15 15 C 1.40218 * 120.00297 * 24.64672 * 13 12 11 16 16 N 1.30646 * 120.00149 * 17.86891 * 15 13 12 17 17 Si 1.86796 * 120.00184 * 197.86605 * 15 13 12 18 18 H 1.48500 * 109.47037 * 90.00188 * 17 15 13 19 19 H 1.48499 * 109.47296 * 210.00020 * 17 15 13 20 20 H 1.48499 * 109.47218 * 330.00010 * 17 15 13 21 21 C 1.40884 * 119.79443 * 359.69498 * 12 11 10 22 22 C 1.36315 * 119.89092 * 0.02562 * 21 12 11 23 23 C 1.50690 * 109.47368 * 175.00272 * 4 3 2 24 24 N 1.34781 * 119.99954 * 299.99995 * 23 4 3 25 25 O 1.21285 * 120.00580 * 119.99622 * 23 4 3 26 26 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47005 * 299.99560 * 1 2 3 28 28 H 1.08999 * 109.47251 * 59.99986 * 1 2 3 29 29 H 1.09005 * 109.47157 * 240.00022 * 2 1 3 30 30 H 1.09001 * 109.47062 * 120.00515 * 2 1 3 31 31 H 1.08994 * 109.46895 * 60.00373 * 3 2 1 32 32 H 1.08999 * 109.47143 * 300.00080 * 3 2 1 33 33 H 0.97001 * 119.99648 * 334.99692 * 6 4 3 34 34 H 1.07995 * 119.94807 * 359.97438 * 10 9 7 35 35 H 1.08002 * 120.05561 * 180.24437 * 11 10 9 36 36 H 0.97001 * 120.00621 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.05461 * 179.97438 * 21 12 11 38 38 H 1.08007 * 119.94654 * 179.97438 * 22 21 12 39 39 H 0.96997 * 119.99694 * 0.02562 * 24 23 4 40 40 H 0.97004 * 120.00512 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 7 4.0589 0.8585 1.2509 7 6 5.2786 0.2871 1.2966 8 8 5.9731 0.2559 0.2991 9 6 5.7715 -0.3010 2.5580 10 6 4.9723 -0.2587 3.7068 11 6 5.4207 -0.8054 4.8722 12 6 6.6957 -1.4029 4.9226 13 6 7.1671 -1.9642 6.1285 14 1 8.2290 -2.0564 6.3023 15 6 6.2568 -2.4022 7.1010 16 7 5.0101 -2.6211 6.7774 17 14 6.8266 -2.6727 8.8592 18 1 6.6647 -1.4145 9.6311 19 1 6.0117 -3.7453 9.4842 20 1 8.2565 -3.0734 8.8600 21 6 7.4985 -1.4380 3.7654 22 6 7.0392 -0.8938 2.6031 23 6 4.0723 2.8578 -0.1244 24 7 3.7463 3.5967 -1.2035 25 8 4.7699 3.3322 0.7470 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.5030 0.8796 2.0455 34 1 3.9972 0.2040 3.6685 35 1 4.8019 -0.7759 5.7569 36 1 4.3805 -2.9245 7.4500 37 1 8.4767 -1.8946 3.7994 38 1 7.6541 -0.9198 1.7156 39 1 3.1880 3.2175 -1.9002 40 1 4.0693 4.5079 -1.2830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286493047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:42 Heat of formation + Delta-G solvation = -78.888676 kcal Electronic energy + Delta-G solvation = -22618.693307 eV Core-core repulsion = 19204.002044 eV Total energy + Delta-G solvation = -3414.691263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06745 -38.49652 -37.04648 -35.90180 -33.83306 -33.62810 -33.09340 -30.45808 -29.41160 -28.88447 -25.88897 -24.67879 -22.13646 -21.41520 -20.95401 -20.23595 -19.68114 -17.65109 -17.46617 -16.85058 -16.71960 -15.74049 -15.33263 -14.74147 -14.70605 -14.18723 -13.99198 -13.84045 -13.41248 -13.30700 -13.17146 -12.71977 -12.56927 -12.11704 -11.95134 -11.87088 -11.37677 -11.32806 -11.26686 -11.24227 -10.91955 -10.82901 -10.62357 -10.00512 -9.98717 -9.67240 -9.52027 -9.31878 -8.97072 -8.61941 -7.67312 -7.49995 -7.00139 -4.56469 2.26762 2.72950 2.93908 2.98249 3.00568 3.08480 3.36460 3.76969 3.79817 3.97922 4.55746 4.60455 4.76185 4.83443 5.11299 5.24349 5.33751 5.43398 5.61998 5.62596 5.70337 5.91975 6.01022 6.09145 6.13877 6.18590 6.36228 6.73131 6.80607 6.85614 6.86390 7.07666 7.17616 7.32914 7.47768 7.68625 7.82897 7.90221 8.11046 8.23886 8.32984 8.43938 8.67134 8.79576 9.09634 9.91967 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020574 B = 0.003700 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.639278 B = 7565.430245 C = 8268.430855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.121 4.121 4 C 0.131 3.869 5 H 0.112 0.888 6 N -0.718 5.718 7 C 0.580 3.420 8 O -0.575 6.575 9 C -0.280 4.280 10 C -0.060 4.060 11 C -0.178 4.178 12 C 0.129 3.871 13 C -0.444 4.444 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.773 5.773 17 Si 0.913 3.087 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.239 4.239 22 C -0.022 4.022 23 C 0.502 3.498 24 N -0.860 5.860 25 O -0.524 6.524 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.401 0.599 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.286 0.714 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.398 0.602 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 5.624 -9.652 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.159 4.159 4 C 0.021 3.979 5 H 0.129 0.871 6 N -0.371 5.371 7 C 0.376 3.624 8 O -0.457 6.457 9 C -0.284 4.284 10 C -0.080 4.080 11 C -0.197 4.197 12 C 0.126 3.874 13 C -0.471 4.471 14 H 0.103 0.897 15 C -0.146 4.146 16 N -0.396 5.396 17 Si 0.737 3.263 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.183 1.183 21 C -0.258 4.258 22 C -0.041 4.041 23 C 0.285 3.715 24 N -0.425 5.425 25 O -0.398 6.398 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.237 0.763 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.226 0.774 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.846 5.622 -9.566 14.835 hybrid contribution -0.295 0.146 0.722 0.794 sum -10.142 5.768 -8.844 14.640 Atomic orbital electron populations 1.21765 0.95601 1.01870 1.01626 1.21543 0.95789 0.95636 1.03373 1.21862 0.91937 0.98754 1.03349 1.20737 0.94546 0.91076 0.91516 0.87081 1.45576 1.19388 1.60458 1.11628 1.18559 0.79395 0.75607 0.88851 1.90615 1.56609 1.61161 1.37274 1.18841 0.99068 1.17742 0.92747 1.20459 0.96589 0.97694 0.93227 1.20968 0.98617 1.02841 0.97292 1.17787 0.91198 0.86802 0.91634 1.19853 0.94848 1.33166 0.99283 0.89728 1.26083 0.94358 0.92710 1.01459 1.69745 1.04369 1.29440 1.36045 0.86213 0.80228 0.78989 0.80856 1.18949 1.20050 1.18299 1.20708 1.01577 1.10390 0.93139 1.20354 0.93437 0.93483 0.96809 1.21418 0.79843 0.88780 0.81450 1.43896 1.56562 1.17922 1.24119 1.90773 1.36391 1.72503 1.40128 0.92527 0.92662 0.92909 0.91572 0.90893 0.90766 0.90357 0.76278 0.89380 0.86197 0.90295 0.88399 0.88146 0.77403 0.77176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.13 -1.19 5.82 -26.73 -0.16 -1.34 16 3 C -0.12 -1.11 4.70 -26.73 -0.13 -1.24 16 4 C 0.13 1.79 2.38 -69.08 -0.16 1.62 16 5 H 0.11 1.55 7.57 -51.93 -0.39 1.16 16 6 N -0.72 -12.39 4.01 -55.94 -0.22 -12.61 16 7 C 0.58 12.83 7.61 -12.42 -0.09 12.74 16 8 O -0.57 -14.05 15.98 5.29 0.08 -13.96 16 9 C -0.28 -6.64 5.89 -104.73 -0.62 -7.26 16 10 C -0.06 -1.39 9.47 -39.61 -0.38 -1.76 16 11 C -0.18 -4.46 8.64 -39.27 -0.34 -4.80 16 12 C 0.13 3.36 5.58 -106.80 -0.60 2.76 16 13 C -0.44 -11.24 9.04 -37.75 -0.34 -11.58 16 14 H 0.08 2.05 7.91 -52.48 -0.42 1.64 16 15 C 0.07 1.77 5.14 -17.31 -0.09 1.68 16 16 N -0.77 -18.66 10.95 55.56 0.61 -18.05 16 17 Si 0.91 17.54 29.60 -169.99 -5.03 12.50 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 19 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 C -0.24 -5.94 9.73 -39.27 -0.38 -6.32 16 22 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 23 C 0.50 7.44 7.46 -10.99 -0.08 7.35 16 24 N -0.86 -8.03 8.74 31.22 0.27 -7.76 16 25 O -0.52 -10.63 17.17 5.55 0.10 -10.54 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.50 7.43 -51.93 -0.39 0.12 16 33 H 0.40 6.35 6.60 -40.82 -0.27 6.08 16 34 H 0.09 1.72 6.37 -52.49 -0.33 1.39 16 35 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 36 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 37 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.10 2.38 7.63 -52.48 -0.40 1.98 16 39 H 0.40 2.28 8.19 -40.82 -0.33 1.95 16 40 H 0.40 3.34 8.93 -40.82 -0.36 2.98 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -32.85 340.24 -7.73 -40.58 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -5.29 Total: 14.59 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.37 Total: -9.87 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.66 Total: -38.42 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.18 Total: -24.50 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.85 -7.73 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286493047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.312 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds