Wall clock time and date at job start Tue Mar 31 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46973 * 2 1 4 4 C 1.53002 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47115 * 54.99977 * 4 3 2 6 6 N 1.46504 * 109.47119 * 295.00455 * 4 3 2 7 7 C 1.34774 * 120.00075 * 154.72936 * 6 4 3 8 8 O 1.21585 * 119.99833 * 359.97438 * 7 6 4 9 9 C 1.47645 * 120.00124 * 179.97438 * 7 6 4 10 10 C 1.40015 * 119.89294 * 359.72830 * 9 7 6 11 11 C 1.36314 * 120.10552 * 179.71884 * 10 9 7 12 12 C 1.40894 * 119.88937 * 0.57290 * 11 10 9 13 13 C 1.41116 * 120.09996 * 179.67966 * 12 11 10 14 14 H 1.08004 * 119.99491 * 204.65151 * 13 12 11 15 15 C 1.40218 * 120.00297 * 24.64672 * 13 12 11 16 16 N 1.30646 * 120.00149 * 17.86891 * 15 13 12 17 17 Si 1.86796 * 120.00184 * 197.86605 * 15 13 12 18 18 H 1.48500 * 109.47037 * 90.00188 * 17 15 13 19 19 H 1.48499 * 109.47296 * 210.00020 * 17 15 13 20 20 H 1.48499 * 109.47218 * 330.00010 * 17 15 13 21 21 C 1.40884 * 119.79443 * 359.69498 * 12 11 10 22 22 C 1.36315 * 119.89092 * 0.02562 * 21 12 11 23 23 C 1.50690 * 109.47368 * 175.00272 * 4 3 2 24 24 N 1.34781 * 119.99954 * 299.99995 * 23 4 3 25 25 O 1.21285 * 120.00580 * 119.99622 * 23 4 3 26 26 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47005 * 299.99560 * 1 2 3 28 28 H 1.08999 * 109.47251 * 59.99986 * 1 2 3 29 29 H 1.09005 * 109.47157 * 240.00022 * 2 1 3 30 30 H 1.09001 * 109.47062 * 120.00515 * 2 1 3 31 31 H 1.08994 * 109.46895 * 60.00373 * 3 2 1 32 32 H 1.08999 * 109.47143 * 300.00080 * 3 2 1 33 33 H 0.97001 * 119.99648 * 334.99692 * 6 4 3 34 34 H 1.07995 * 119.94807 * 359.97438 * 10 9 7 35 35 H 1.08002 * 120.05561 * 180.24437 * 11 10 9 36 36 H 0.97001 * 120.00621 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.05461 * 179.97438 * 21 12 11 38 38 H 1.08007 * 119.94654 * 179.97438 * 22 21 12 39 39 H 0.96997 * 119.99694 * 0.02562 * 24 23 4 40 40 H 0.97004 * 120.00512 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 7 4.0589 0.8585 1.2509 7 6 5.2786 0.2871 1.2966 8 8 5.9731 0.2559 0.2991 9 6 5.7715 -0.3010 2.5580 10 6 4.9723 -0.2587 3.7068 11 6 5.4207 -0.8054 4.8722 12 6 6.6957 -1.4029 4.9226 13 6 7.1671 -1.9642 6.1285 14 1 8.2290 -2.0564 6.3023 15 6 6.2568 -2.4022 7.1010 16 7 5.0101 -2.6211 6.7774 17 14 6.8266 -2.6727 8.8592 18 1 6.6647 -1.4145 9.6311 19 1 6.0117 -3.7453 9.4842 20 1 8.2565 -3.0734 8.8600 21 6 7.4985 -1.4380 3.7654 22 6 7.0392 -0.8938 2.6031 23 6 4.0723 2.8578 -0.1244 24 7 3.7463 3.5967 -1.2035 25 8 4.7699 3.3322 0.7470 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.5030 0.8796 2.0455 34 1 3.9972 0.2040 3.6685 35 1 4.8019 -0.7759 5.7569 36 1 4.3805 -2.9245 7.4500 37 1 8.4767 -1.8946 3.7994 38 1 7.6541 -0.9198 1.7156 39 1 3.1880 3.2175 -1.9002 40 1 4.0693 4.5079 -1.2830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286493047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:41 Heat of formation + Delta-G solvation = -102.257414 kcal Electronic energy + Delta-G solvation = -22619.706652 eV Core-core repulsion = 19204.002044 eV Total energy + Delta-G solvation = -3415.704607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41603 -40.07755 -38.81346 -37.03117 -35.67092 -34.77101 -34.24130 -32.15052 -31.31104 -30.11360 -27.61258 -25.67212 -23.86717 -22.82332 -22.19625 -21.57838 -21.21219 -19.37302 -18.76543 -18.32579 -17.92828 -17.28029 -16.75731 -15.90024 -15.78424 -15.71776 -15.59115 -15.38530 -15.01622 -14.67527 -14.48334 -14.21933 -13.89161 -13.67507 -13.36718 -13.21360 -12.87365 -12.78251 -12.62873 -12.38019 -12.23352 -12.01399 -11.76609 -11.55521 -11.37638 -11.27422 -11.12537 -10.74482 -10.67392 -10.06550 -9.58056 -9.41386 -8.79246 -6.48471 0.43604 1.14475 1.38820 1.43675 1.53445 1.58603 2.03614 2.17188 2.27455 2.64756 2.84753 3.65558 3.69069 3.90379 4.02419 4.18598 4.29913 4.33170 4.42312 4.44757 4.63510 4.78006 4.89286 4.91552 5.00157 5.02725 5.15039 5.28407 5.29737 5.32731 5.47230 5.50090 5.58287 5.80953 5.89215 5.93414 5.98931 6.21900 6.43582 6.53299 6.64603 6.76734 6.88472 7.32909 7.42232 8.16246 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020574 B = 0.003700 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.639278 B = 7565.430245 C = 8268.430855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.109 4.109 4 C 0.127 3.873 5 H 0.111 0.889 6 N -0.704 5.704 7 C 0.579 3.421 8 O -0.604 6.604 9 C -0.294 4.294 10 C -0.053 4.053 11 C -0.197 4.197 12 C 0.102 3.898 13 C -0.474 4.474 14 H 0.085 0.915 15 C 0.039 3.961 16 N -0.797 5.797 17 Si 0.989 3.011 18 H -0.260 1.260 19 H -0.263 1.263 20 H -0.258 1.258 21 C -0.253 4.253 22 C -0.034 4.034 23 C 0.499 3.501 24 N -0.830 5.830 25 O -0.588 6.588 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.408 0.592 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.297 0.703 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.419 0.581 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.566 6.234 -9.984 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.147 4.147 4 C 0.018 3.982 5 H 0.128 0.872 6 N -0.356 5.356 7 C 0.373 3.627 8 O -0.488 6.488 9 C -0.298 4.298 10 C -0.072 4.072 11 C -0.217 4.217 12 C 0.099 3.901 13 C -0.501 4.501 14 H 0.103 0.897 15 C -0.181 4.181 16 N -0.420 5.420 17 Si 0.808 3.192 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.181 1.181 21 C -0.272 4.272 22 C -0.053 4.053 23 C 0.282 3.718 24 N -0.395 5.395 25 O -0.467 6.467 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.245 0.755 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.251 0.749 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.932 6.255 -9.976 16.763 hybrid contribution 0.250 -0.017 0.686 0.731 sum -11.683 6.238 -9.289 16.177 Atomic orbital electron populations 1.21735 0.94034 1.02106 1.02625 1.21535 0.97108 0.95450 1.02332 1.21894 0.88199 0.99163 1.05456 1.21084 0.97410 0.90233 0.89493 0.87181 1.45424 1.17687 1.59004 1.13444 1.18358 0.80667 0.75938 0.87773 1.90585 1.57830 1.62537 1.37889 1.19177 0.99023 1.17551 0.94068 1.20698 0.97654 0.96639 0.92175 1.21006 0.98688 1.04067 0.97898 1.18136 0.92012 0.87621 0.92365 1.20122 0.95429 1.34380 1.00207 0.89701 1.26921 0.94168 0.91732 1.05233 1.69759 1.05375 1.29026 1.37853 0.85096 0.79754 0.79210 0.75115 1.18436 1.18714 1.18149 1.20850 1.02066 1.11061 0.93267 1.20504 0.94179 0.93873 0.96735 1.21570 0.79136 0.89250 0.81804 1.43612 1.55259 1.17852 1.22814 1.90757 1.39437 1.73790 1.42690 0.92769 0.92533 0.91019 0.91436 0.93276 0.90340 0.86471 0.75493 0.86178 0.86735 0.89130 0.87735 0.88053 0.74869 0.76129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.13 -2.11 5.82 30.60 0.18 -1.93 16 3 C -0.11 -1.68 4.70 30.60 0.14 -1.54 16 4 C 0.13 3.24 2.38 44.24 0.11 3.34 16 5 H 0.11 2.90 7.57 -2.39 -0.02 2.88 16 6 N -0.70 -23.94 4.01 -449.17 -1.80 -25.73 16 7 C 0.58 25.83 7.61 86.73 0.66 26.49 16 8 O -0.60 -29.95 15.98 -3.99 -0.06 -30.01 16 9 C -0.29 -14.25 5.89 -19.93 -0.12 -14.37 16 10 C -0.05 -2.44 9.47 22.25 0.21 -2.23 16 11 C -0.20 -10.12 8.64 22.47 0.19 -9.93 16 12 C 0.10 5.47 5.58 -21.28 -0.12 5.35 16 13 C -0.47 -24.56 9.04 23.46 0.21 -24.35 16 14 H 0.08 4.23 7.91 -2.91 -0.02 4.20 16 15 C 0.04 1.82 5.14 85.35 0.44 2.26 16 16 N -0.80 -38.51 10.95 21.87 0.24 -38.27 16 17 Si 0.99 35.41 29.60 68.60 2.03 37.44 16 18 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 19 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 20 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 21 C -0.25 -13.09 9.73 22.47 0.22 -12.87 16 22 C -0.03 -1.71 9.52 22.25 0.21 -1.50 16 23 C 0.50 14.01 7.46 87.65 0.65 14.67 16 24 N -0.83 -13.19 8.74 -173.53 -1.52 -14.71 16 25 O -0.59 -23.75 17.17 -3.05 -0.05 -23.80 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 1.05 7.75 -2.39 -0.02 1.03 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.12 0.93 7.43 -2.39 -0.02 0.92 16 33 H 0.41 12.57 6.60 -92.71 -0.61 11.96 16 34 H 0.12 4.62 6.37 -2.91 -0.02 4.60 16 35 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 36 H 0.30 12.72 8.29 -92.71 -0.77 11.95 16 37 H 0.10 5.07 8.06 -2.91 -0.02 5.04 16 38 H 0.10 5.00 7.63 -2.91 -0.02 4.98 16 39 H 0.42 3.16 8.19 -92.71 -0.76 2.40 16 40 H 0.41 5.78 8.93 -92.71 -0.83 4.95 16 Total: -1.00 -74.03 340.24 1.44 -72.59 By element: Atomic # 1 Polarization: 41.36 SS G_CDS: -1.10 Total: 40.26 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 3.70 Total: -17.76 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -3.08 Total: -78.71 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.12 Total: -53.81 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Total: -74.03 1.44 -72.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286493047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.668 kcal (2) G-P(sol) polarization free energy of solvation -74.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds