Wall clock time and date at job start Tue Mar 31 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47629 * 2 1 4 4 C 1.52996 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46812 * 54.99884 * 4 3 2 6 6 N 1.46506 * 109.47030 * 294.99887 * 4 3 2 7 7 C 1.34776 * 119.99782 * 154.99822 * 6 4 3 8 8 O 1.21554 * 120.00095 * 0.02562 * 7 6 4 9 9 C 1.47887 * 119.99790 * 179.97438 * 7 6 4 10 10 C 1.39913 * 120.02325 * 0.29514 * 9 7 6 11 11 C 1.38334 * 120.35462 * 180.25313 * 10 9 7 12 12 C 1.37752 * 120.41277 * 359.44894 * 11 10 9 13 13 C 1.40755 * 120.03814 * 0.28051 * 12 11 10 14 14 C 1.41437 * 120.17445 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00412 * 24.46106 * 14 13 12 16 16 C 1.39941 * 119.99412 * 204.45998 * 14 13 12 17 17 N 1.30821 * 120.00160 * 17.89989 * 16 14 13 18 18 Si 1.86801 * 119.99666 * 197.90289 * 16 14 13 19 19 H 1.48503 * 109.47049 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47397 * 119.99764 * 18 16 14 21 21 H 1.48497 * 109.47005 * 239.99936 * 18 16 14 22 22 C 1.39000 * 120.02177 * 180.02562 * 9 7 6 23 23 C 1.50699 * 109.47241 * 174.99862 * 4 3 2 24 24 N 1.34777 * 119.99766 * 300.00522 * 23 4 3 25 25 O 1.21277 * 120.00070 * 119.99513 * 23 4 3 26 26 H 1.08993 * 109.47054 * 59.99501 * 1 2 3 27 27 H 1.08998 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46430 * 300.00097 * 1 2 3 29 29 H 1.09003 * 109.46762 * 239.99483 * 2 1 3 30 30 H 1.09007 * 109.46870 * 120.00459 * 2 1 3 31 31 H 1.08999 * 109.47052 * 59.99703 * 3 2 1 32 32 H 1.09003 * 109.46841 * 300.00654 * 3 2 1 33 33 H 0.97001 * 119.99855 * 335.00323 * 6 4 3 34 34 H 1.08001 * 119.82557 * 359.97438 * 10 9 7 35 35 H 1.08005 * 119.79349 * 179.72356 * 11 10 9 36 36 H 1.07995 * 119.98137 * 180.25140 * 12 11 10 37 37 H 0.97006 * 119.99551 * 179.97438 * 17 16 14 38 38 H 1.07995 * 120.20149 * 0.04257 * 22 9 7 39 39 H 0.96997 * 120.00562 * 359.97438 * 24 23 4 40 40 H 0.97001 * 119.99695 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 7 4.0589 0.8584 1.2509 7 6 5.2809 0.2918 1.2981 8 8 5.9775 0.2656 0.3023 9 6 5.7745 -0.2972 2.5616 10 6 4.9710 -0.2719 3.7067 11 6 5.4280 -0.8161 4.8936 12 6 6.6743 -1.3991 4.9591 13 6 7.4946 -1.4389 3.8159 14 6 8.7750 -2.0364 3.8801 15 1 8.9838 -2.7869 4.6281 16 6 9.7712 -1.6549 2.9744 17 7 9.6579 -0.5326 2.3118 18 14 11.2627 -2.7483 2.7113 19 1 11.1527 -3.9516 3.5747 20 1 11.3265 -3.1645 1.2873 21 1 12.4948 -1.9980 3.0635 22 6 7.0349 -0.8812 2.6109 23 6 4.0725 2.8577 -0.1245 24 7 3.7464 3.5965 -1.2036 25 8 4.7700 3.3320 0.7468 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.5031 0.8796 2.0456 34 1 3.9905 0.1790 3.6650 35 1 4.8019 -0.7876 5.7732 36 1 7.0225 -1.8255 5.8882 37 1 10.3487 -0.2680 1.6842 38 1 7.6570 -0.9062 1.7285 39 1 3.1886 3.2171 -1.9006 40 1 4.0700 4.5074 -1.2835 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286513864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:43 Heat of formation + Delta-G solvation = -74.348617 kcal Electronic energy + Delta-G solvation = -22855.312268 eV Core-core repulsion = 19440.817877 eV Total energy + Delta-G solvation = -3414.494391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.11593 -38.54031 -36.95692 -35.93980 -33.78239 -33.57984 -33.09859 -30.45956 -29.40652 -28.78255 -25.32964 -24.81457 -22.64121 -21.45053 -20.93948 -20.21197 -19.60994 -17.77383 -17.58059 -16.80621 -16.09705 -15.74406 -15.07467 -14.77851 -14.76879 -14.44401 -14.22045 -13.75647 -13.44471 -13.35458 -13.15583 -12.67534 -12.57195 -12.44396 -12.02426 -11.60407 -11.39224 -11.31973 -11.13228 -11.04480 -10.87604 -10.68332 -10.45298 -10.00316 -9.98565 -9.65760 -9.63959 -9.17782 -9.01397 -8.67382 -7.57936 -7.46789 -6.74929 -4.36483 2.25284 2.73455 2.85060 3.10830 3.15833 3.18549 3.32637 3.73220 3.95066 3.99494 4.52291 4.66396 4.73377 4.79287 5.08888 5.20043 5.29597 5.38624 5.57993 5.63876 5.67368 5.82773 5.88942 6.01113 6.13162 6.13709 6.32652 6.70237 6.76168 6.81627 7.03216 7.06485 7.25842 7.33100 7.43228 7.74739 7.79733 7.97107 8.11150 8.23371 8.33858 8.55432 8.84926 8.88488 8.97715 10.19565 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018617 B = 0.004204 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.604518 B = 6659.020412 C = 7328.845011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.120 4.120 4 C 0.130 3.870 5 H 0.113 0.887 6 N -0.713 5.713 7 C 0.573 3.427 8 O -0.545 6.545 9 C -0.124 4.124 10 C -0.216 4.216 11 C -0.098 4.098 12 C -0.212 4.212 13 C 0.099 3.901 14 C -0.461 4.461 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.782 5.782 18 Si 0.909 3.091 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.274 1.274 22 C -0.092 4.092 23 C 0.501 3.499 24 N -0.859 5.859 25 O -0.521 6.521 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.403 0.597 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.284 0.716 38 H 0.134 0.866 39 H 0.398 0.602 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.445 3.368 -7.202 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.159 4.159 4 C 0.020 3.980 5 H 0.130 0.870 6 N -0.367 5.367 7 C 0.364 3.636 8 O -0.423 6.423 9 C -0.127 4.127 10 C -0.236 4.236 11 C -0.116 4.116 12 C -0.232 4.232 13 C 0.096 3.904 14 C -0.490 4.490 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.406 5.406 18 Si 0.733 3.267 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.112 4.112 23 C 0.284 3.716 24 N -0.425 5.425 25 O -0.395 6.395 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.239 0.761 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.226 0.774 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -14.347 3.626 -7.398 16.545 hybrid contribution 0.318 0.059 -0.192 0.376 sum -14.029 3.684 -7.589 16.370 Atomic orbital electron populations 1.21764 0.95581 1.01845 1.01663 1.21549 0.95795 0.95659 1.03367 1.21859 0.91811 0.98744 1.03443 1.20781 0.94643 0.91281 0.91327 0.86954 1.45617 1.19025 1.60213 1.11854 1.18827 0.79623 0.76046 0.89092 1.90680 1.55820 1.58898 1.36889 1.19406 0.97025 1.04624 0.91687 1.20330 0.99017 1.10369 0.93853 1.20426 0.96005 0.99243 0.95938 1.21088 0.96385 1.08220 0.97481 1.17597 0.92733 0.89961 0.90099 1.19611 0.95053 1.20178 1.14114 0.90054 1.25972 1.00162 0.94391 0.94100 1.69815 1.33421 1.17863 1.19485 0.86249 0.80303 0.80906 0.79224 1.18337 1.19593 1.19947 1.21634 0.92550 0.98066 0.98964 1.21356 0.79932 0.88719 0.81586 1.43877 1.56560 1.17971 1.24043 1.90792 1.36170 1.72425 1.40110 0.92857 0.92541 0.92687 0.91504 0.90957 0.90727 0.90244 0.76089 0.89282 0.88918 0.88639 0.90507 0.84876 0.77411 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.71 16 2 C -0.13 -1.11 5.82 -26.73 -0.16 -1.26 16 3 C -0.12 -1.06 4.70 -26.73 -0.13 -1.19 16 4 C 0.13 1.76 2.38 -69.08 -0.16 1.59 16 5 H 0.11 1.57 7.58 -51.93 -0.39 1.18 16 6 N -0.71 -12.23 4.01 -55.86 -0.22 -12.45 16 7 C 0.57 13.05 7.60 -12.31 -0.09 12.95 16 8 O -0.55 -14.07 16.00 5.32 0.09 -13.98 16 9 C -0.12 -3.05 5.87 -105.04 -0.62 -3.67 16 10 C -0.22 -4.70 9.55 -38.92 -0.37 -5.07 16 11 C -0.10 -2.15 10.01 -39.72 -0.40 -2.55 16 12 C -0.21 -5.16 9.78 -38.81 -0.38 -5.54 16 13 C 0.10 2.68 5.57 -106.87 -0.60 2.08 16 14 C -0.46 -12.38 9.05 -37.73 -0.34 -12.72 16 15 H 0.08 2.07 7.91 -52.49 -0.42 1.66 16 16 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 17 N -0.78 -21.43 10.95 55.55 0.61 -20.82 16 18 Si 0.91 19.17 29.60 -169.99 -5.03 14.13 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 C -0.09 -2.54 8.24 -38.44 -0.32 -2.85 16 23 C 0.50 7.58 7.46 -10.99 -0.08 7.49 16 24 N -0.86 -8.29 8.73 31.22 0.27 -8.02 16 25 O -0.52 -10.86 17.16 5.56 0.10 -10.76 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.75 7.75 -51.93 -0.40 0.34 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.49 7.43 -51.93 -0.39 0.10 16 33 H 0.40 6.13 6.62 -40.82 -0.27 5.86 16 34 H 0.09 1.61 6.38 -52.49 -0.33 1.28 16 35 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 37 H 0.28 7.15 8.30 -40.82 -0.34 6.81 16 38 H 0.13 3.96 5.74 -52.49 -0.30 3.66 16 39 H 0.40 2.36 8.19 -40.82 -0.33 2.03 16 40 H 0.40 3.51 8.93 -40.82 -0.36 3.14 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -34.84 340.48 -7.72 -42.56 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.30 Total: 13.85 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.36 Total: -9.63 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.66 Total: -41.29 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: 0.18 Total: -24.75 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.84 -7.72 -42.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286513864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.788 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds