Wall clock time and date at job start Tue Mar 31 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47629 * 2 1 4 4 C 1.52996 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46812 * 54.99884 * 4 3 2 6 6 N 1.46506 * 109.47030 * 294.99887 * 4 3 2 7 7 C 1.34776 * 119.99782 * 154.99822 * 6 4 3 8 8 O 1.21554 * 120.00095 * 0.02562 * 7 6 4 9 9 C 1.47887 * 119.99790 * 179.97438 * 7 6 4 10 10 C 1.39913 * 120.02325 * 0.29514 * 9 7 6 11 11 C 1.38334 * 120.35462 * 180.25313 * 10 9 7 12 12 C 1.37752 * 120.41277 * 359.44894 * 11 10 9 13 13 C 1.40755 * 120.03814 * 0.28051 * 12 11 10 14 14 C 1.41437 * 120.17445 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00412 * 24.46106 * 14 13 12 16 16 C 1.39941 * 119.99412 * 204.45998 * 14 13 12 17 17 N 1.30821 * 120.00160 * 17.89989 * 16 14 13 18 18 Si 1.86801 * 119.99666 * 197.90289 * 16 14 13 19 19 H 1.48503 * 109.47049 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47397 * 119.99764 * 18 16 14 21 21 H 1.48497 * 109.47005 * 239.99936 * 18 16 14 22 22 C 1.39000 * 120.02177 * 180.02562 * 9 7 6 23 23 C 1.50699 * 109.47241 * 174.99862 * 4 3 2 24 24 N 1.34777 * 119.99766 * 300.00522 * 23 4 3 25 25 O 1.21277 * 120.00070 * 119.99513 * 23 4 3 26 26 H 1.08993 * 109.47054 * 59.99501 * 1 2 3 27 27 H 1.08998 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46430 * 300.00097 * 1 2 3 29 29 H 1.09003 * 109.46762 * 239.99483 * 2 1 3 30 30 H 1.09007 * 109.46870 * 120.00459 * 2 1 3 31 31 H 1.08999 * 109.47052 * 59.99703 * 3 2 1 32 32 H 1.09003 * 109.46841 * 300.00654 * 3 2 1 33 33 H 0.97001 * 119.99855 * 335.00323 * 6 4 3 34 34 H 1.08001 * 119.82557 * 359.97438 * 10 9 7 35 35 H 1.08005 * 119.79349 * 179.72356 * 11 10 9 36 36 H 1.07995 * 119.98137 * 180.25140 * 12 11 10 37 37 H 0.97006 * 119.99551 * 179.97438 * 17 16 14 38 38 H 1.07995 * 120.20149 * 0.04257 * 22 9 7 39 39 H 0.96997 * 120.00562 * 359.97438 * 24 23 4 40 40 H 0.97001 * 119.99695 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 7 4.0589 0.8584 1.2509 7 6 5.2809 0.2918 1.2981 8 8 5.9775 0.2656 0.3023 9 6 5.7745 -0.2972 2.5616 10 6 4.9710 -0.2719 3.7067 11 6 5.4280 -0.8161 4.8936 12 6 6.6743 -1.3991 4.9591 13 6 7.4946 -1.4389 3.8159 14 6 8.7750 -2.0364 3.8801 15 1 8.9838 -2.7869 4.6281 16 6 9.7712 -1.6549 2.9744 17 7 9.6579 -0.5326 2.3118 18 14 11.2627 -2.7483 2.7113 19 1 11.1527 -3.9516 3.5747 20 1 11.3265 -3.1645 1.2873 21 1 12.4948 -1.9980 3.0635 22 6 7.0349 -0.8812 2.6109 23 6 4.0725 2.8577 -0.1245 24 7 3.7464 3.5965 -1.2036 25 8 4.7700 3.3320 0.7468 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.5031 0.8796 2.0456 34 1 3.9905 0.1790 3.6650 35 1 4.8019 -0.7876 5.7732 36 1 7.0225 -1.8255 5.8882 37 1 10.3487 -0.2680 1.6842 38 1 7.6570 -0.9062 1.7285 39 1 3.1886 3.2171 -1.9006 40 1 4.0700 4.5074 -1.2835 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286513864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:43 Heat of formation + Delta-G solvation = -100.573783 kcal Electronic energy + Delta-G solvation = -22856.449477 eV Core-core repulsion = 19440.817877 eV Total energy + Delta-G solvation = -3415.631600 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50974 -40.12635 -38.75416 -37.08011 -35.63863 -34.79946 -34.26236 -32.16211 -31.29487 -29.99927 -27.21203 -25.79939 -24.34693 -22.82397 -22.19631 -21.46689 -21.26880 -19.55708 -18.71917 -17.98395 -17.86191 -17.17026 -16.67700 -16.39657 -15.86907 -15.75919 -15.68071 -15.33949 -15.01837 -14.72304 -14.47435 -14.29231 -14.16663 -13.48812 -13.36474 -12.97823 -12.80890 -12.78955 -12.53629 -12.27967 -12.16700 -12.00885 -11.90816 -11.54523 -11.50527 -11.32139 -11.09076 -10.82558 -10.69956 -10.14510 -9.48328 -9.39206 -8.66841 -6.38941 0.37094 0.99897 1.35496 1.46097 1.52731 1.55882 1.95395 2.17209 2.21019 2.62926 2.81138 3.62336 3.69481 3.88042 3.99493 4.05178 4.27325 4.37996 4.42557 4.58060 4.64726 4.76728 4.87845 4.91849 5.01450 5.08039 5.18542 5.27305 5.30434 5.32117 5.40366 5.51393 5.51605 5.85273 5.86929 5.91639 6.04565 6.27526 6.40777 6.47442 6.65182 6.87097 6.94324 7.26016 7.32934 8.30019 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018617 B = 0.004204 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.604518 B = 6659.020412 C = 7328.845011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.108 4.108 4 C 0.125 3.875 5 H 0.108 0.892 6 N -0.693 5.693 7 C 0.568 3.432 8 O -0.587 6.587 9 C -0.139 4.139 10 C -0.198 4.198 11 C -0.095 4.095 12 C -0.217 4.217 13 C 0.067 3.933 14 C -0.497 4.497 15 H 0.086 0.914 16 C 0.028 3.972 17 N -0.828 5.828 18 Si 0.985 3.015 19 H -0.249 1.249 20 H -0.270 1.270 21 H -0.265 1.265 22 C -0.132 4.132 23 C 0.497 3.503 24 N -0.830 5.830 25 O -0.588 6.588 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.413 0.587 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.285 0.715 38 H 0.098 0.902 39 H 0.420 0.580 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.309 3.669 -7.128 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.146 4.146 4 C 0.016 3.984 5 H 0.126 0.874 6 N -0.345 5.345 7 C 0.358 3.642 8 O -0.469 6.469 9 C -0.142 4.142 10 C -0.217 4.217 11 C -0.113 4.113 12 C -0.237 4.237 13 C 0.065 3.935 14 C -0.526 4.526 15 H 0.104 0.896 16 C -0.187 4.187 17 N -0.454 5.454 18 Si 0.805 3.195 19 H -0.172 1.172 20 H -0.195 1.195 21 H -0.189 1.189 22 C -0.153 4.153 23 C 0.281 3.719 24 N -0.395 5.395 25 O -0.467 6.467 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.252 0.748 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.252 0.748 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -17.313 3.948 -7.358 19.222 hybrid contribution 0.961 0.058 -0.230 0.989 sum -16.353 4.005 -7.588 18.467 Atomic orbital electron populations 1.21729 0.93878 1.02168 1.02666 1.21547 0.97203 0.95272 1.02449 1.21902 0.87581 0.99406 1.05686 1.21145 0.97821 0.90132 0.89300 0.87383 1.45405 1.16954 1.58398 1.13773 1.18705 0.81021 0.76453 0.88005 1.90645 1.57452 1.60795 1.37987 1.19778 0.96579 1.04046 0.93804 1.20837 1.00091 1.08261 0.92560 1.20926 0.95430 0.97389 0.97554 1.21412 0.97155 1.07985 0.97115 1.17956 0.93737 0.90845 0.90968 1.19904 0.95851 1.21296 1.15589 0.89604 1.26917 1.03238 0.95308 0.93220 1.69930 1.34788 1.19934 1.20698 0.85119 0.76268 0.79019 0.79063 1.17163 1.19473 1.18949 1.21443 0.94082 1.01457 0.98293 1.21582 0.79158 0.89305 0.81893 1.43604 1.55251 1.17880 1.22773 1.90773 1.39317 1.73811 1.42789 0.91293 0.92656 0.92234 0.91729 0.92783 0.89843 0.86561 0.74830 0.84831 0.84231 0.87176 0.90404 0.88438 0.74829 0.76132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.13 -1.89 5.82 30.59 0.18 -1.71 16 3 C -0.11 -1.54 4.70 30.59 0.14 -1.39 16 4 C 0.12 3.21 2.38 44.24 0.11 3.31 16 5 H 0.11 2.94 7.58 -2.39 -0.02 2.92 16 6 N -0.69 -23.21 4.01 -448.93 -1.80 -25.01 16 7 C 0.57 26.51 7.60 86.80 0.66 27.17 16 8 O -0.59 -31.88 16.00 -3.88 -0.06 -31.94 16 9 C -0.14 -6.98 5.87 -20.13 -0.12 -7.10 16 10 C -0.20 -8.25 9.55 22.70 0.22 -8.04 16 11 C -0.10 -3.94 10.01 22.18 0.22 -3.72 16 12 C -0.22 -10.51 9.78 22.77 0.22 -10.29 16 13 C 0.07 3.79 5.57 -21.32 -0.12 3.68 16 14 C -0.50 -27.93 9.05 23.47 0.21 -27.72 16 15 H 0.09 4.53 7.91 -2.91 -0.02 4.50 16 16 C 0.03 1.50 5.14 85.26 0.44 1.94 16 17 N -0.83 -48.36 10.95 21.82 0.24 -48.12 16 18 Si 0.99 40.83 29.60 68.60 2.03 42.86 16 19 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 C -0.13 -7.70 8.24 23.01 0.19 -7.52 16 23 C 0.50 14.45 7.46 87.66 0.65 15.10 16 24 N -0.83 -14.04 8.73 -173.54 -1.52 -15.55 16 25 O -0.59 -24.62 17.16 -3.02 -0.05 -24.67 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.00 7.75 -2.38 -0.02 0.98 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.12 0.86 7.43 -2.39 -0.02 0.84 16 33 H 0.41 11.71 6.62 -92.71 -0.61 11.09 16 34 H 0.13 4.31 6.38 -2.91 -0.02 4.29 16 35 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 36 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.29 15.37 8.30 -92.70 -0.77 14.60 16 38 H 0.10 6.31 5.74 -2.91 -0.02 6.30 16 39 H 0.42 3.50 8.19 -92.71 -0.76 2.74 16 40 H 0.41 6.28 8.93 -92.71 -0.83 5.45 16 Total: -1.00 -83.24 340.48 1.45 -81.79 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -1.11 Total: 37.81 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 3.72 Total: -17.16 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -3.08 Total: -88.69 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.11 Total: -56.61 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -83.24 1.45 -81.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286513864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.785 kcal (2) G-P(sol) polarization free energy of solvation -83.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds