Wall clock time and date at job start Tue Mar 31 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38358 * 119.85231 * 269.72759 * 3 2 1 5 5 C 1.37957 * 120.13944 * 179.71856 * 4 3 2 6 6 C 1.39580 * 119.85513 * 0.57925 * 5 4 3 7 7 C 1.47847 * 120.14523 * 179.68045 * 6 5 4 8 8 O 1.21552 * 120.00002 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00132 * 0.02562 * 7 6 5 10 10 N 1.40099 * 120.00161 * 179.97438 * 9 7 6 11 11 C 1.34774 * 120.00161 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00408 * 180.02562 * 11 10 9 14 14 C 1.52992 * 109.47475 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47475 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99370 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00440 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99785 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00173 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46980 * 90.00139 * 19 17 15 21 21 H 1.48493 * 109.47074 * 210.00161 * 19 17 15 22 22 H 1.48505 * 109.46937 * 330.00475 * 19 17 15 23 23 C 1.39574 * 119.70897 * 359.69368 * 6 5 4 24 24 C 1.37959 * 119.85554 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 30 30 H 1.08000 * 119.92961 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.07469 * 180.27240 * 5 4 3 32 32 H 0.97009 * 119.99686 * 0.02562 * 9 7 6 33 33 H 0.96994 * 119.99789 * 0.02562 * 10 9 7 34 34 H 1.09006 * 109.46573 * 300.00601 * 13 11 10 35 35 H 1.08999 * 109.46503 * 59.99992 * 13 11 10 36 36 H 1.09006 * 109.47246 * 300.00252 * 14 13 11 37 37 H 1.09002 * 109.46995 * 60.00048 * 14 13 11 38 38 H 0.97002 * 119.99852 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.07111 * 179.97438 * 23 6 5 40 40 H 1.08000 * 119.92863 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0683 -1.2000 5 6 2.7216 3.3709 -1.2069 6 6 2.9558 4.0315 0.0001 7 6 3.4495 5.4252 0.0001 8 8 3.6530 5.9978 1.0528 9 7 3.6739 6.0606 -1.1670 10 7 4.1412 7.3814 -1.1670 11 6 4.3661 8.0167 -2.3341 12 8 4.1636 7.4452 -3.3845 13 6 4.8693 9.4372 -2.3342 14 6 5.0389 9.9182 -3.7766 15 6 5.5427 11.3385 -3.7766 16 1 5.7242 11.8470 -2.8413 17 6 5.7729 11.9883 -4.9706 18 7 5.5523 11.3689 -6.1096 19 14 6.3981 13.7486 -4.9706 20 1 7.8831 13.7465 -4.9713 21 1 5.9035 14.4495 -6.1826 22 1 5.9047 14.4491 -3.7576 23 6 2.7221 3.3707 1.2071 24 6 2.2623 2.0700 1.2001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0899 1.5545 -2.1332 31 1 2.9005 3.8767 -2.1442 32 1 3.5112 5.6037 -2.0071 33 1 4.3036 7.8383 -0.3270 34 1 4.1518 10.0767 -1.8201 35 1 5.8296 9.4823 -1.8204 36 1 5.7562 9.2786 -4.2910 37 1 4.0784 9.8730 -4.2899 38 1 5.7139 11.8262 -6.9496 39 1 2.9018 3.8761 2.1444 40 1 2.0814 1.5574 2.1333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290893091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:00 Heat of formation + Delta-G solvation = -35.769396 kcal Electronic energy + Delta-G solvation = -21377.504700 eV Core-core repulsion = 17964.683230 eV Total energy + Delta-G solvation = -3412.821470 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64924 -39.47818 -38.45691 -35.27427 -34.57335 -33.54729 -32.01332 -31.26916 -30.71123 -29.43202 -25.86441 -24.83800 -23.05397 -22.44157 -21.87549 -20.97982 -19.97798 -18.14177 -17.72155 -16.75081 -16.01836 -15.76746 -15.58412 -15.55954 -15.03352 -14.70749 -14.47826 -14.27609 -14.02056 -13.77168 -13.70068 -13.42653 -12.88624 -12.63011 -12.24975 -12.21170 -11.71172 -11.49991 -11.25328 -11.24079 -11.15816 -10.94655 -10.64789 -10.36464 -10.04490 -9.80726 -9.42600 -9.36221 -9.16018 -9.14618 -8.37511 -8.22734 -6.00388 -4.05068 0.47532 1.01069 1.91246 2.49447 3.03317 3.32023 3.38288 3.40977 3.52684 3.99100 4.28220 4.35073 4.43902 4.53764 4.64039 4.73067 4.88911 4.98183 5.08118 5.11607 5.35022 5.35403 5.44918 5.45990 5.52066 5.63710 5.76419 5.92057 5.97799 6.09951 6.11062 6.17039 6.49731 6.66398 6.75297 6.88707 7.66157 7.69479 7.77194 7.91061 8.00543 8.32296 8.60300 9.02590 9.58898 11.10511 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042635 B = 0.002283 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.584689 B =12260.568201 C =12806.328004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.056 4.056 4 C -0.123 4.123 5 C -0.081 4.081 6 C -0.130 4.130 7 C 0.556 3.444 8 O -0.543 6.543 9 N -0.518 5.518 10 N -0.535 5.535 11 C 0.513 3.487 12 O -0.534 6.534 13 C -0.119 4.119 14 C 0.038 3.962 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.052 4.052 24 C -0.127 4.127 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.429 0.571 33 H 0.429 0.571 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.138 0.862 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.528 -22.752 14.170 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.057 4.057 4 C -0.141 4.141 5 C -0.100 4.100 6 C -0.135 4.135 7 C 0.344 3.656 8 O -0.420 6.420 9 N -0.264 5.264 10 N -0.287 5.287 11 C 0.302 3.698 12 O -0.407 6.407 13 C -0.160 4.160 14 C 0.000 4.000 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.071 4.071 24 C -0.145 4.145 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.272 0.728 33 H 0.271 0.729 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.156 0.844 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.517 -22.702 13.914 27.956 hybrid contribution 0.362 0.968 -0.142 1.043 sum -8.155 -21.734 13.772 26.992 Atomic orbital electron populations 1.21755 0.94313 1.01977 1.02488 1.20633 0.96485 0.92273 1.03300 1.20179 0.96053 0.96281 0.93156 1.20995 1.00561 0.94548 0.98035 1.21386 0.96605 0.94983 0.97047 1.19654 1.05855 0.93118 0.94841 1.18333 0.78404 0.86180 0.82728 1.90782 1.53133 1.67450 1.30669 1.44754 1.66167 1.05342 1.10110 1.45571 1.68966 1.02696 1.11431 1.22132 0.76476 0.89735 0.81495 1.90687 1.51328 1.67811 1.30911 1.21910 1.01393 0.87430 1.05286 1.18941 0.98459 0.95539 0.87065 1.21187 1.44891 0.98073 0.92526 0.92399 1.25023 0.95565 0.98181 0.95616 1.69995 1.48351 1.37129 0.97307 0.86556 0.79026 0.84616 0.77539 1.20645 1.21219 1.19835 1.21239 0.94451 0.93891 0.97565 1.21027 1.00901 0.94614 0.97928 0.92396 0.92173 0.92338 0.90679 0.90628 0.85174 0.85312 0.72774 0.72861 0.89410 0.89413 0.95600 0.95586 0.92891 0.84406 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.34 16 2 C -0.09 -0.45 6.06 -27.88 -0.17 -0.62 16 3 C -0.06 -0.41 5.14 -104.53 -0.54 -0.95 16 4 C -0.12 -0.96 9.68 -39.64 -0.38 -1.34 16 5 C -0.08 -0.75 9.54 -39.18 -0.37 -1.12 16 6 C -0.13 -1.43 5.87 -104.97 -0.62 -2.05 16 7 C 0.56 7.59 7.89 -12.33 -0.10 7.49 16 8 O -0.54 -8.75 16.19 5.32 0.09 -8.67 16 9 N -0.52 -7.27 6.21 30.53 0.19 -7.08 16 10 N -0.54 -8.25 6.26 31.22 0.20 -8.05 16 11 C 0.51 9.59 7.95 -10.99 -0.09 9.50 16 12 O -0.53 -11.81 15.82 5.56 0.09 -11.73 16 13 C -0.12 -2.32 5.64 -27.89 -0.16 -2.47 16 14 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 15 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 C -0.05 -0.51 9.60 -39.19 -0.38 -0.89 16 24 C -0.13 -0.97 9.68 -39.64 -0.38 -1.36 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.13 1.04 6.41 -52.49 -0.34 0.71 16 32 H 0.43 5.58 6.04 -182.59 -1.10 4.48 16 33 H 0.43 5.92 8.00 -182.60 -1.46 4.46 16 34 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.14 1.32 7.65 -52.49 -0.40 0.92 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -34.47 347.72 -9.31 -43.78 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.48 Total: 3.03 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.34 Total: -6.71 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 1.12 Total: -41.38 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.17 Total: -20.39 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.47 -9.31 -43.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290893091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.007 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds