Wall clock time and date at job start Tue Mar 31 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38358 * 119.85231 * 269.72759 * 3 2 1 5 5 C 1.37957 * 120.13944 * 179.71856 * 4 3 2 6 6 C 1.39580 * 119.85513 * 0.57925 * 5 4 3 7 7 C 1.47847 * 120.14523 * 179.68045 * 6 5 4 8 8 O 1.21552 * 120.00002 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00132 * 0.02562 * 7 6 5 10 10 N 1.40099 * 120.00161 * 179.97438 * 9 7 6 11 11 C 1.34774 * 120.00161 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00408 * 180.02562 * 11 10 9 14 14 C 1.52992 * 109.47475 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47475 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99370 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00440 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99785 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00173 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46980 * 90.00139 * 19 17 15 21 21 H 1.48493 * 109.47074 * 210.00161 * 19 17 15 22 22 H 1.48505 * 109.46937 * 330.00475 * 19 17 15 23 23 C 1.39574 * 119.70897 * 359.69368 * 6 5 4 24 24 C 1.37959 * 119.85554 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 30 30 H 1.08000 * 119.92961 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.07469 * 180.27240 * 5 4 3 32 32 H 0.97009 * 119.99686 * 0.02562 * 9 7 6 33 33 H 0.96994 * 119.99789 * 0.02562 * 10 9 7 34 34 H 1.09006 * 109.46573 * 300.00601 * 13 11 10 35 35 H 1.08999 * 109.46503 * 59.99992 * 13 11 10 36 36 H 1.09006 * 109.47246 * 300.00252 * 14 13 11 37 37 H 1.09002 * 109.46995 * 60.00048 * 14 13 11 38 38 H 0.97002 * 119.99852 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.07111 * 179.97438 * 23 6 5 40 40 H 1.08000 * 119.92863 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0683 -1.2000 5 6 2.7216 3.3709 -1.2069 6 6 2.9558 4.0315 0.0001 7 6 3.4495 5.4252 0.0001 8 8 3.6530 5.9978 1.0528 9 7 3.6739 6.0606 -1.1670 10 7 4.1412 7.3814 -1.1670 11 6 4.3661 8.0167 -2.3341 12 8 4.1636 7.4452 -3.3845 13 6 4.8693 9.4372 -2.3342 14 6 5.0389 9.9182 -3.7766 15 6 5.5427 11.3385 -3.7766 16 1 5.7242 11.8470 -2.8413 17 6 5.7729 11.9883 -4.9706 18 7 5.5523 11.3689 -6.1096 19 14 6.3981 13.7486 -4.9706 20 1 7.8831 13.7465 -4.9713 21 1 5.9035 14.4495 -6.1826 22 1 5.9047 14.4491 -3.7576 23 6 2.7221 3.3707 1.2071 24 6 2.2623 2.0700 1.2001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0899 1.5545 -2.1332 31 1 2.9005 3.8767 -2.1442 32 1 3.5112 5.6037 -2.0071 33 1 4.3036 7.8383 -0.3270 34 1 4.1518 10.0767 -1.8201 35 1 5.8296 9.4823 -1.8204 36 1 5.7562 9.2786 -4.2910 37 1 4.0784 9.8730 -4.2899 38 1 5.7139 11.8262 -6.9496 39 1 2.9018 3.8761 2.1444 40 1 2.0814 1.5574 2.1333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290893091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:00 Heat of formation + Delta-G solvation = -58.278010 kcal Electronic energy + Delta-G solvation = -21378.480747 eV Core-core repulsion = 17964.683230 eV Total energy + Delta-G solvation = -3413.797517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.72975 -40.62454 -39.54064 -36.60111 -35.57645 -35.16664 -33.46308 -32.45932 -31.77761 -30.28703 -27.69980 -25.64039 -24.03847 -23.57158 -23.03313 -22.06800 -21.19001 -19.39783 -18.92885 -18.52947 -17.32093 -16.93220 -16.58731 -16.48159 -16.38750 -16.05702 -15.94889 -15.21055 -14.90249 -14.58017 -14.43821 -14.30176 -14.26388 -14.19508 -13.45204 -13.27376 -12.85372 -12.77824 -12.49962 -12.48395 -12.24149 -12.01987 -11.94681 -11.70053 -11.68542 -11.50406 -11.32400 -11.00775 -10.55776 -10.01897 -9.89898 -9.47321 -8.17881 -6.31098 -0.29076 0.35864 0.69516 1.35252 1.44054 1.45892 1.56908 1.73938 2.42883 2.77005 2.89159 3.15818 3.43065 3.75764 3.81967 3.92890 3.97560 4.23889 4.36000 4.44455 4.50862 4.51674 4.53642 4.62377 4.89341 4.98287 5.00006 5.11666 5.12233 5.22892 5.29884 5.42061 5.44604 5.51577 5.59508 5.61996 5.67711 5.85047 5.88253 6.16807 6.39775 6.71267 6.87480 7.23275 7.38903 8.94585 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042635 B = 0.002283 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.584689 B =12260.568201 C =12806.328004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.050 4.050 4 C -0.127 4.127 5 C -0.086 4.086 6 C -0.153 4.153 7 C 0.560 3.440 8 O -0.571 6.571 9 N -0.519 5.519 10 N -0.521 5.521 11 C 0.519 3.481 12 O -0.575 6.575 13 C -0.109 4.109 14 C 0.042 3.958 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.973 3.027 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.257 1.257 23 C -0.061 4.061 24 C -0.125 4.125 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.151 0.849 31 H 0.134 0.866 32 H 0.434 0.566 33 H 0.439 0.561 34 H 0.113 0.887 35 H 0.113 0.887 36 H -0.012 1.012 37 H -0.011 1.011 38 H 0.263 0.737 39 H 0.134 0.866 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 -23.530 15.851 29.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.050 4.050 4 C -0.144 4.144 5 C -0.104 4.104 6 C -0.157 4.157 7 C 0.349 3.651 8 O -0.450 6.450 9 N -0.266 5.266 10 N -0.271 5.271 11 C 0.308 3.692 12 O -0.452 6.452 13 C -0.150 4.150 14 C 0.005 3.995 15 C -0.581 4.581 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.797 3.203 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.180 1.180 23 C -0.081 4.081 24 C -0.143 4.143 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.169 0.831 31 H 0.152 0.848 32 H 0.277 0.723 33 H 0.283 0.717 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.071 0.929 39 H 0.151 0.849 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.735 -23.493 15.654 29.551 hybrid contribution 0.369 1.051 -0.617 1.274 sum -8.366 -22.441 15.036 28.279 Atomic orbital electron populations 1.21755 0.94035 1.02669 1.02053 1.20702 0.96559 0.90760 1.04511 1.20533 0.94464 0.97313 0.92732 1.21293 0.99848 0.93970 0.99334 1.21509 0.96591 0.95715 0.96617 1.19555 1.08169 0.91823 0.96177 1.18828 0.77361 0.86977 0.81901 1.90757 1.54439 1.68327 1.31480 1.44914 1.66417 1.04457 1.10779 1.45178 1.67588 1.03525 1.10806 1.21787 0.76269 0.89538 0.81619 1.90676 1.53410 1.68616 1.32529 1.21655 1.03668 0.88371 1.01280 1.18718 0.95276 0.94957 0.90588 1.21696 1.44218 0.98811 0.93346 0.90485 1.26094 0.95780 1.03277 0.95205 1.70162 1.49875 1.39378 0.98153 0.85336 0.78516 0.78504 0.77976 1.19817 1.21261 1.18037 1.21334 0.94937 0.94839 0.96944 1.21300 0.99953 0.93760 0.99302 0.92719 0.90965 0.92925 0.89385 0.89599 0.83092 0.84812 0.72250 0.71665 0.86887 0.86869 0.99322 0.99302 0.92852 0.84855 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 71.98 0.71 -0.34 16 2 C -0.09 -0.63 6.06 29.85 0.18 -0.45 16 3 C -0.05 -0.61 5.14 -19.80 -0.10 -0.71 16 4 C -0.13 -1.73 9.68 22.23 0.22 -1.51 16 5 C -0.09 -1.51 9.54 22.53 0.21 -1.29 16 6 C -0.15 -3.31 5.87 -20.09 -0.12 -3.43 16 7 C 0.56 15.28 7.89 86.79 0.68 15.97 16 8 O -0.57 -18.41 16.19 -3.88 -0.06 -18.47 16 9 N -0.52 -14.57 6.21 -175.60 -1.09 -15.66 16 10 N -0.52 -15.85 6.26 -173.53 -1.09 -16.94 16 11 C 0.52 19.54 7.95 87.66 0.70 20.23 16 12 O -0.58 -26.30 15.82 -3.04 -0.05 -26.35 16 13 C -0.11 -4.19 5.64 29.85 0.17 -4.02 16 14 C 0.04 2.28 4.26 29.85 0.13 2.41 16 15 C -0.54 -30.21 9.11 25.60 0.23 -29.97 16 16 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 17 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 18 N -0.94 -58.35 13.29 21.45 0.28 -58.06 16 19 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 C -0.06 -1.15 9.60 22.53 0.22 -0.93 16 24 C -0.13 -1.68 9.68 22.23 0.22 -1.46 16 25 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.09 0.45 8.08 -2.39 -0.02 0.43 16 29 H 0.09 0.48 8.08 -2.39 -0.02 0.46 16 30 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 31 H 0.13 2.13 6.41 -2.91 -0.02 2.11 16 32 H 0.43 11.42 6.04 -213.31 -1.29 10.13 16 33 H 0.44 11.68 8.00 -213.33 -1.71 9.97 16 34 H 0.11 3.79 8.14 -2.38 -0.02 3.78 16 35 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 36 H -0.01 -0.71 8.10 -2.38 -0.02 -0.72 16 37 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.13 2.54 7.65 -2.91 -0.02 2.52 16 40 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -76.40 347.72 2.00 -74.40 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -1.93 Total: 20.57 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 3.91 Total: -5.39 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -1.89 Total: -90.66 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -0.11 Total: -44.83 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -76.40 2.00 -74.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290893091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.123 kcal (2) G-P(sol) polarization free energy of solvation -76.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds