Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47499 * 2 1 4 4 C 1.34782 * 119.99522 * 61.54428 * 3 2 1 5 5 O 1.21279 * 120.00245 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99553 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.46993 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47454 * 180.02562 * 7 6 4 9 9 H 1.08002 * 119.99544 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00086 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00420 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99805 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47245 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47213 * 119.99790 * 12 10 8 15 15 H 1.48500 * 109.47126 * 239.99615 * 12 10 8 16 16 C 1.50700 * 109.47556 * 120.00461 * 2 1 3 17 17 N 1.34772 * 120.00362 * 204.99908 * 16 2 1 18 18 O 1.21286 * 119.99623 * 24.99163 * 16 2 1 19 19 C 1.50707 * 109.46911 * 240.00091 * 2 1 3 20 20 C 1.38230 * 120.00075 * 274.50626 * 19 2 1 21 21 C 1.38237 * 120.00086 * 180.02562 * 20 19 2 22 22 C 1.38238 * 119.99859 * 359.95008 * 21 20 19 23 23 C 1.38238 * 119.99973 * 0.28386 * 22 21 20 24 24 C 1.38238 * 119.99892 * 359.52925 * 23 22 21 25 25 H 1.08994 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46462 * 299.99923 * 1 2 3 27 27 H 1.08992 * 109.47027 * 59.99809 * 1 2 3 28 28 H 0.96995 * 120.00542 * 241.54798 * 3 2 1 29 29 H 1.09003 * 109.47120 * 300.00079 * 6 4 3 30 30 H 1.09002 * 109.47224 * 60.00554 * 6 4 3 31 31 H 1.09007 * 109.46831 * 300.00288 * 7 6 4 32 32 H 1.08996 * 109.47633 * 59.99688 * 7 6 4 33 33 H 0.97002 * 120.00424 * 180.02562 * 11 10 8 34 34 H 0.97000 * 119.99659 * 359.97438 * 17 16 2 35 35 H 0.97000 * 119.99882 * 179.97438 * 17 16 2 36 36 H 1.08005 * 120.00076 * 359.97438 * 20 19 2 37 37 H 1.07997 * 119.99907 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.00053 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.99927 * 179.72291 * 23 22 21 40 40 H 1.08001 * 119.99891 * 180.20726 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7187 2.2019 1.0263 5 8 1.0451 1.7968 1.9499 6 6 2.2206 3.6229 1.0260 7 6 1.7433 4.3326 2.2946 8 6 2.2446 5.7537 2.2941 9 1 2.8442 6.1145 1.4714 10 6 1.9389 6.5929 3.3444 11 7 1.2092 6.1535 4.3464 12 14 2.5610 8.3543 3.3441 13 1 3.3541 8.5990 2.1127 14 1 1.4061 9.2872 3.3831 15 1 3.4176 8.5769 4.5364 16 6 2.0324 -0.7105 1.2304 17 7 3.2544 -0.4247 1.7218 18 8 1.3370 -1.5394 1.7784 19 6 2.0323 -0.7104 -1.2305 20 6 2.1740 -2.0854 -1.2254 21 6 2.6352 -2.7370 -2.3539 22 6 2.9538 -2.0136 -3.4880 23 6 2.8167 -0.6381 -3.4916 24 6 2.3518 0.0131 -2.3643 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.5574 1.7051 -0.7385 29 1 3.3103 3.6233 0.9980 30 1 1.8344 4.1445 0.1503 31 1 0.6536 4.3321 2.3230 32 1 2.1297 3.8109 3.1701 33 1 0.9937 6.7441 5.0852 34 1 3.8106 0.2380 1.2834 35 1 3.5776 -0.8818 2.5140 36 1 1.9251 -2.6506 -0.3393 37 1 2.7463 -3.8113 -2.3497 38 1 3.3138 -2.5227 -4.3698 39 1 3.0698 -0.0725 -4.3761 40 1 2.2415 1.0875 -2.3682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291443326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = -55.928067 kcal Electronic energy + Delta-G solvation = -23124.157425 eV Core-core repulsion = 19710.461809 eV Total energy + Delta-G solvation = -3413.695616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06153 -38.98473 -38.47938 -35.37357 -33.51349 -33.43366 -32.02084 -31.18182 -30.75324 -29.28903 -25.88239 -24.72792 -23.25281 -22.26495 -21.71483 -20.03128 -19.45302 -17.81504 -17.56399 -16.90835 -16.62423 -15.88742 -15.52939 -15.01157 -14.91038 -14.53546 -14.38996 -14.21957 -14.02549 -13.63774 -13.30388 -12.98744 -12.74230 -12.33963 -12.23491 -11.96525 -11.92900 -11.43140 -11.34300 -11.19557 -10.97943 -10.61436 -10.14204 -10.02389 -9.71452 -9.57417 -9.29929 -9.22804 -9.19453 -9.05186 -8.81812 -8.35957 -5.99429 -4.04348 0.98207 1.09397 2.61714 3.05038 3.25009 3.30178 3.37805 3.40474 3.44763 3.61311 4.32933 4.44381 4.59940 4.70985 4.84453 4.89579 5.08851 5.17332 5.28019 5.35693 5.46290 5.60653 5.71403 5.79183 5.85742 6.11512 6.13179 6.14448 6.16546 6.21661 6.38308 6.50434 6.65764 6.79745 6.85046 7.36785 7.67616 7.70894 7.80610 8.02707 8.31030 8.33607 8.62335 9.04211 9.59676 11.11343 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.003593 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.720538 B = 7791.090380 C = 8404.234098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.203 3.797 3 N -0.741 5.741 4 C 0.507 3.493 5 O -0.514 6.514 6 C -0.128 4.128 7 C 0.037 3.963 8 C -0.528 4.528 9 H 0.056 0.944 10 C 0.058 3.942 11 N -0.888 5.888 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.536 3.464 17 N -0.844 5.844 18 O -0.539 6.539 19 C -0.083 4.083 20 C -0.106 4.106 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.110 4.110 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.401 0.599 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.400 0.600 35 H 0.401 0.599 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.048 -15.646 -16.957 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.113 3.887 3 N -0.401 5.401 4 C 0.296 3.704 5 O -0.387 6.387 6 C -0.168 4.168 7 C 0.000 4.000 8 C -0.566 4.566 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.527 5.527 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.319 3.681 17 N -0.406 5.406 18 O -0.414 6.414 19 C -0.084 4.084 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.133 4.133 24 C -0.129 4.129 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.238 0.762 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.229 0.771 35 H 0.232 0.768 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.876 -16.373 -15.849 23.303 hybrid contribution 1.011 1.335 -0.199 1.687 sum 5.887 -15.038 -16.048 22.767 Atomic orbital electron populations 1.22044 0.90693 1.03595 1.04073 1.19225 0.96488 0.82313 0.90711 1.46640 1.57152 1.10479 1.25782 1.21742 0.79364 0.88623 0.80686 1.90717 1.36833 1.76389 1.34801 1.21893 1.01418 0.89089 1.04415 1.18903 0.97372 0.93785 0.89968 1.21231 1.33232 0.96400 1.05755 0.92545 1.25026 0.95173 0.98600 0.95574 1.70005 1.37563 1.35862 1.09239 0.86543 0.78613 0.84912 0.77923 1.19744 1.21002 1.21027 1.20345 0.81122 0.81722 0.84887 1.43683 1.18518 1.45419 1.33023 1.90718 1.56009 1.34644 1.60046 1.19546 1.00563 0.94101 0.94187 1.21137 0.98554 0.93563 0.99218 1.21144 0.99037 1.00075 0.92971 1.21224 0.99830 0.94341 0.98240 1.21141 0.99373 0.94661 0.98098 1.20951 0.99235 1.00113 0.92564 0.90882 0.89380 0.91694 0.76233 0.90124 0.90016 0.95768 0.95809 0.92961 0.77132 0.76810 0.85354 0.85744 0.85900 0.85591 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 7.94 37.16 0.29 -1.86 16 2 C 0.20 2.72 0.83 -134.12 -0.11 2.61 16 3 N -0.74 -9.50 4.18 -49.76 -0.21 -9.71 16 4 C 0.51 8.96 7.03 -10.98 -0.08 8.88 16 5 O -0.51 -11.46 13.22 5.56 0.07 -11.39 16 6 C -0.13 -2.41 5.64 -27.88 -0.16 -2.56 16 7 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 8 C -0.53 -14.56 9.11 -34.44 -0.31 -14.88 16 9 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 12 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C 0.54 8.32 4.32 -10.99 -0.05 8.27 16 17 N -0.84 -10.70 8.57 31.22 0.27 -10.43 16 18 O -0.54 -10.12 16.34 5.55 0.09 -10.03 16 19 C -0.08 -0.90 4.80 -104.62 -0.50 -1.41 16 20 C -0.11 -1.14 9.15 -39.58 -0.36 -1.50 16 21 C -0.11 -0.98 10.05 -39.58 -0.40 -1.38 16 22 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 23 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 24 C -0.11 -0.98 9.03 -39.58 -0.36 -1.34 16 25 H 0.07 1.04 7.87 -51.93 -0.41 0.64 16 26 H 0.09 1.60 6.28 -51.93 -0.33 1.27 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.40 3.83 6.36 -40.82 -0.26 3.57 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.40 4.32 8.16 -40.82 -0.33 3.99 16 35 H 0.40 4.62 8.93 -40.82 -0.36 4.26 16 36 H 0.13 1.52 6.76 -52.48 -0.35 1.17 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.94 6.41 -52.49 -0.34 0.61 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -35.67 335.78 -7.35 -43.02 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.30 Total: 8.85 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.04 Total: -5.32 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.80 Total: -46.48 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.16 Total: -21.41 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.67 -7.35 -43.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291443326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.910 kcal (2) G-P(sol) polarization free energy of solvation -35.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds