Wall clock time and date at job start Tue Mar 31 2020 05:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47499 * 2 1 4 4 C 1.34782 * 119.99522 * 61.54428 * 3 2 1 5 5 O 1.21279 * 120.00245 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99553 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.46993 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47454 * 180.02562 * 7 6 4 9 9 H 1.08002 * 119.99544 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00086 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00420 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99805 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47245 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47213 * 119.99790 * 12 10 8 15 15 H 1.48500 * 109.47126 * 239.99615 * 12 10 8 16 16 C 1.50700 * 109.47556 * 120.00461 * 2 1 3 17 17 N 1.34772 * 120.00362 * 204.99908 * 16 2 1 18 18 O 1.21286 * 119.99623 * 24.99163 * 16 2 1 19 19 C 1.50707 * 109.46911 * 240.00091 * 2 1 3 20 20 C 1.38230 * 120.00075 * 274.50626 * 19 2 1 21 21 C 1.38237 * 120.00086 * 180.02562 * 20 19 2 22 22 C 1.38238 * 119.99859 * 359.95008 * 21 20 19 23 23 C 1.38238 * 119.99973 * 0.28386 * 22 21 20 24 24 C 1.38238 * 119.99892 * 359.52925 * 23 22 21 25 25 H 1.08994 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46462 * 299.99923 * 1 2 3 27 27 H 1.08992 * 109.47027 * 59.99809 * 1 2 3 28 28 H 0.96995 * 120.00542 * 241.54798 * 3 2 1 29 29 H 1.09003 * 109.47120 * 300.00079 * 6 4 3 30 30 H 1.09002 * 109.47224 * 60.00554 * 6 4 3 31 31 H 1.09007 * 109.46831 * 300.00288 * 7 6 4 32 32 H 1.08996 * 109.47633 * 59.99688 * 7 6 4 33 33 H 0.97002 * 120.00424 * 180.02562 * 11 10 8 34 34 H 0.97000 * 119.99659 * 359.97438 * 17 16 2 35 35 H 0.97000 * 119.99882 * 179.97438 * 17 16 2 36 36 H 1.08005 * 120.00076 * 359.97438 * 20 19 2 37 37 H 1.07997 * 119.99907 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.00053 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.99927 * 179.72291 * 23 22 21 40 40 H 1.08001 * 119.99891 * 180.20726 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7187 2.2019 1.0263 5 8 1.0451 1.7968 1.9499 6 6 2.2206 3.6229 1.0260 7 6 1.7433 4.3326 2.2946 8 6 2.2446 5.7537 2.2941 9 1 2.8442 6.1145 1.4714 10 6 1.9389 6.5929 3.3444 11 7 1.2092 6.1535 4.3464 12 14 2.5610 8.3543 3.3441 13 1 3.3541 8.5990 2.1127 14 1 1.4061 9.2872 3.3831 15 1 3.4176 8.5769 4.5364 16 6 2.0324 -0.7105 1.2304 17 7 3.2544 -0.4247 1.7218 18 8 1.3370 -1.5394 1.7784 19 6 2.0323 -0.7104 -1.2305 20 6 2.1740 -2.0854 -1.2254 21 6 2.6352 -2.7370 -2.3539 22 6 2.9538 -2.0136 -3.4880 23 6 2.8167 -0.6381 -3.4916 24 6 2.3518 0.0131 -2.3643 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.5574 1.7051 -0.7385 29 1 3.3103 3.6233 0.9980 30 1 1.8344 4.1445 0.1503 31 1 0.6536 4.3321 2.3230 32 1 2.1297 3.8109 3.1701 33 1 0.9937 6.7441 5.0852 34 1 3.8106 0.2380 1.2834 35 1 3.5776 -0.8818 2.5140 36 1 1.9251 -2.6506 -0.3393 37 1 2.7463 -3.8113 -2.3497 38 1 3.3138 -2.5227 -4.3698 39 1 3.0698 -0.0725 -4.3761 40 1 2.2415 1.0875 -2.3682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291443326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:01 Heat of formation + Delta-G solvation = -82.987999 kcal Electronic energy + Delta-G solvation = -23125.330832 eV Core-core repulsion = 19710.461809 eV Total energy + Delta-G solvation = -3414.869023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.19425 -40.09785 -39.63573 -36.60123 -35.53096 -34.59987 -33.43406 -32.41422 -31.75837 -30.32593 -27.73404 -25.93546 -24.30173 -23.40297 -22.95126 -21.34748 -20.67678 -19.05355 -18.73778 -18.40093 -17.94875 -17.12819 -16.65118 -16.41943 -16.39192 -15.79562 -15.49960 -15.34310 -15.15141 -14.85961 -14.35039 -14.20765 -14.19610 -13.81684 -13.39810 -13.27282 -13.15727 -13.08592 -12.83715 -12.43510 -12.26079 -12.00414 -11.89571 -11.61612 -11.36700 -11.25400 -10.76385 -10.70001 -10.56733 -10.31633 -9.87722 -9.72455 -8.16473 -6.30164 0.28471 0.44193 1.40985 1.44031 1.44679 1.57858 1.64330 2.04138 2.44076 2.45951 2.81853 3.17310 3.39818 3.73782 3.92341 4.01421 4.06165 4.13516 4.28758 4.50049 4.55537 4.57216 4.59177 4.64043 4.71645 4.94880 5.06972 5.10095 5.12500 5.23059 5.51954 5.52621 5.55025 5.59416 5.66041 5.76273 5.88050 6.03016 6.19151 6.27350 6.50826 6.89497 7.17311 7.27591 7.40532 8.96154 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.003593 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.720538 B = 7791.090380 C = 8404.234098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.209 3.791 3 N -0.711 5.711 4 C 0.513 3.487 5 O -0.568 6.568 6 C -0.117 4.117 7 C 0.042 3.958 8 C -0.538 4.538 9 H 0.079 0.921 10 C -0.008 4.008 11 N -0.939 5.939 12 Si 0.972 3.028 13 H -0.249 1.249 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.527 3.473 17 N -0.833 5.833 18 O -0.582 6.582 19 C -0.096 4.096 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.110 4.110 24 C -0.111 4.111 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.422 0.578 29 H 0.113 0.887 30 H 0.109 0.891 31 H -0.020 1.020 32 H -0.018 1.018 33 H 0.261 0.739 34 H 0.411 0.589 35 H 0.406 0.594 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 -14.703 -20.832 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.119 3.881 3 N -0.371 5.371 4 C 0.302 3.698 5 O -0.445 6.445 6 C -0.156 4.156 7 C 0.004 3.996 8 C -0.576 4.576 9 H 0.097 0.903 10 C -0.206 4.206 11 N -0.579 5.579 12 Si 0.796 3.204 13 H -0.173 1.173 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.311 3.689 17 N -0.395 5.395 18 O -0.461 6.461 19 C -0.097 4.097 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.129 4.129 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.263 0.737 29 H 0.131 0.869 30 H 0.127 0.873 31 H -0.002 1.002 32 H 0.000 1.000 33 H 0.070 0.930 34 H 0.241 0.759 35 H 0.237 0.763 36 H 0.124 0.876 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.328 -15.422 -19.801 26.146 hybrid contribution 0.282 0.948 0.957 1.376 sum 7.611 -14.474 -18.844 24.950 Atomic orbital electron populations 1.21983 0.92062 1.03141 1.03011 1.19103 0.95567 0.82059 0.91402 1.46204 1.56110 1.09814 1.24925 1.21515 0.78647 0.88721 0.80882 1.90728 1.39318 1.77245 1.37198 1.21663 1.03261 0.89203 1.01485 1.18686 0.94490 0.94240 0.92150 1.21755 1.32757 0.96952 1.06134 0.90266 1.26129 0.95328 1.03951 0.95160 1.70191 1.39520 1.37882 1.10330 0.85304 0.78016 0.78384 0.78716 1.17270 1.20957 1.20901 1.20796 0.81405 0.81373 0.85331 1.43614 1.17845 1.45138 1.32926 1.90686 1.57294 1.36675 1.61419 1.19311 1.02633 0.94077 0.93650 1.21067 1.00037 0.93633 0.99497 1.21367 0.98498 1.01100 0.92615 1.21610 0.98333 0.94591 0.98516 1.21514 0.97934 0.94921 0.98429 1.21149 0.98790 1.00914 0.92062 0.91143 0.93310 0.89630 0.73682 0.86917 0.87271 1.00187 0.99961 0.93022 0.75856 0.76260 0.87646 0.84183 0.83070 0.82640 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 7.94 71.98 0.57 -3.81 16 2 C 0.21 5.57 0.83 2.11 0.00 5.57 16 3 N -0.71 -17.17 4.18 -429.74 -1.80 -18.97 16 4 C 0.51 18.08 7.03 87.66 0.62 18.69 16 5 O -0.57 -26.59 13.22 -3.03 -0.04 -26.63 16 6 C -0.12 -4.21 5.64 29.85 0.17 -4.04 16 7 C 0.04 2.24 4.26 29.85 0.13 2.37 16 8 C -0.54 -29.51 9.11 25.60 0.23 -29.27 16 9 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 10 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 11 N -0.94 -59.16 13.29 21.44 0.28 -58.88 16 12 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 13 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 C 0.53 16.93 4.32 87.66 0.38 17.31 16 17 N -0.83 -21.39 8.57 -173.53 -1.49 -22.87 16 18 O -0.58 -23.27 16.34 -3.05 -0.05 -23.32 16 19 C -0.10 -1.94 4.80 -19.86 -0.10 -2.04 16 20 C -0.12 -2.57 9.15 22.27 0.20 -2.36 16 21 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 22 C -0.11 -1.25 10.05 22.27 0.22 -1.03 16 23 C -0.11 -1.19 10.05 22.27 0.22 -0.96 16 24 C -0.11 -1.58 9.03 22.27 0.20 -1.38 16 25 H 0.07 2.14 7.87 -2.39 -0.02 2.12 16 26 H 0.05 1.88 6.28 -2.39 -0.01 1.87 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.42 6.62 6.36 -92.71 -0.59 6.03 16 29 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 30 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 31 H -0.02 -1.25 8.10 -2.38 -0.02 -1.27 16 32 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 33 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.41 8.51 8.16 -92.71 -0.76 7.75 16 35 H 0.41 9.64 8.93 -92.71 -0.83 8.81 16 36 H 0.11 2.64 6.76 -2.91 -0.02 2.62 16 37 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.14 1.49 6.41 -2.91 -0.02 1.47 16 Total: -1.00 -83.35 335.78 1.39 -81.96 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -1.09 Total: 25.75 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 3.54 Total: -2.52 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -3.00 Total: -100.72 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.09 Total: -49.95 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -83.35 1.39 -81.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291443326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.026 kcal (2) G-P(sol) polarization free energy of solvation -83.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds