Wall clock time and date at job start Tue Mar 31 2020 06:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 H 1.09001 * 109.46915 * 55.00020 * 3 2 1 5 5 C 1.50703 * 109.47088 * 175.00120 * 3 2 1 6 6 H 1.08000 * 119.99666 * 119.99698 * 5 3 2 7 7 C 1.37874 * 120.00047 * 300.00382 * 5 3 2 8 8 N 1.31521 * 119.99949 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00085 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47446 * 59.99656 * 9 7 5 11 11 H 1.48509 * 109.47296 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47237 * 299.99421 * 9 7 5 13 13 N 1.46501 * 109.46888 * 294.99917 * 3 2 1 14 14 C 1.30094 * 119.99760 * 116.20248 * 13 3 2 15 15 O 1.35101 * 120.00102 * 187.57611 * 14 13 3 16 16 N 1.37514 * 119.99833 * 7.58383 * 14 13 3 17 17 C 1.39873 * 119.99876 * 189.04362 * 16 14 13 18 18 C 1.39060 * 120.08517 * 334.28924 * 17 16 14 19 19 C 1.38113 * 119.68318 * 180.02562 * 18 17 16 20 20 C 1.38019 * 120.43268 * 0.21978 * 19 18 17 21 21 C 1.39315 * 120.39138 * 0.02562 * 20 19 18 22 22 C 1.38330 * 120.08622 * 154.30975 * 17 16 14 23 23 C 1.51926 * 132.11852 * 358.81561 * 22 17 16 24 24 C 1.54717 * 101.78665 * 195.79361 * 23 22 17 25 25 O 1.36144 * 129.85140 * 179.51264 * 21 20 19 26 26 H 1.08996 * 109.47212 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47107 * 299.99934 * 1 2 3 28 28 H 1.08997 * 109.47183 * 60.00174 * 1 2 3 29 29 H 1.09005 * 109.47107 * 240.00066 * 2 1 3 30 30 H 1.09003 * 109.47441 * 120.00164 * 2 1 3 31 31 H 0.96992 * 120.00076 * 180.02562 * 8 7 5 32 32 H 0.96702 * 114.00215 * 0.02562 * 15 14 13 33 33 H 0.97001 * 120.00028 * 9.04183 * 16 14 13 34 34 H 1.08000 * 120.15409 * 0.03292 * 18 17 16 35 35 H 1.08000 * 119.78276 * 180.19892 * 19 18 17 36 36 H 1.07999 * 119.80351 * 180.02562 * 20 19 18 37 37 H 1.08997 * 110.90308 * 77.73007 * 23 22 17 38 38 H 1.08997 * 111.10718 * 313.94912 * 23 22 17 39 39 H 1.08995 * 110.74975 * 216.53824 * 24 23 22 40 40 H 1.08998 * 110.75215 * 93.36009 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0049 0.8811 1.3817 10 1 6.4995 2.2814 1.3821 11 1 6.3978 0.2175 2.6508 12 1 6.5975 0.1472 0.2348 13 7 1.6525 2.0975 -1.2518 14 6 0.8390 3.1125 -1.2301 15 8 0.3609 3.6199 -2.3874 16 7 0.4660 3.6690 -0.0293 17 6 -0.5484 4.6313 0.0105 18 6 -0.8131 5.4118 -1.1095 19 6 -1.8163 6.3598 -1.0610 20 6 -2.5531 6.5396 0.0922 21 6 -2.2935 5.7670 1.2221 22 6 -1.2907 4.8092 1.1642 23 6 -1.2586 4.1125 2.5139 24 6 -2.6100 4.5498 3.1274 25 8 -2.8861 5.7869 2.4476 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8293 -0.0605 2.9501 32 1 0.6787 3.1630 -3.1782 33 1 0.9063 3.3943 0.7902 34 1 -0.2370 5.2772 -2.0131 35 1 -2.0254 6.9647 -1.9309 36 1 -3.3355 7.2836 0.1188 37 1 -0.4236 4.4700 3.1163 38 1 -1.2166 3.0298 2.3959 39 1 -2.5120 4.7133 4.2005 40 1 -3.3851 3.8122 2.9197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331217067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:04 Heat of formation + Delta-G solvation = -12.433581 kcal Electronic energy + Delta-G solvation = -23429.146659 eV Core-core repulsion = 20017.337105 eV Total energy + Delta-G solvation = -3411.809554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01864 -39.21149 -37.12764 -35.83685 -34.35412 -32.41546 -31.79707 -30.70233 -29.35254 -28.01515 -26.79626 -23.48471 -23.31284 -22.59738 -21.32149 -21.14216 -19.43640 -17.98689 -17.12706 -16.50310 -16.45780 -16.17952 -15.90640 -15.38463 -14.94595 -14.50860 -14.31131 -13.62205 -13.31907 -13.12443 -12.90643 -12.87635 -12.55992 -12.41698 -12.17388 -11.71134 -11.36667 -11.23738 -11.08182 -11.00215 -10.92245 -10.83560 -10.40879 -10.27165 -9.96445 -9.76876 -9.53917 -8.72221 -8.45936 -8.16669 -8.02700 -7.15659 -6.10006 -4.15958 1.45392 1.57837 3.14894 3.27377 3.30186 3.31527 3.34689 3.41254 3.96842 4.34604 4.46972 4.57653 4.70097 5.01859 5.16766 5.19863 5.30043 5.40950 5.51394 5.72202 5.76569 5.83640 5.88684 6.09372 6.19338 6.23451 6.36615 6.43769 6.45787 6.62976 6.74284 6.87380 6.91151 7.18058 7.25598 7.36219 7.40775 7.60804 7.75724 7.91914 8.20820 8.30850 8.85536 9.13795 9.51279 10.94715 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.004763 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.863740 B = 5877.752687 C = 6406.997368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.229 3.771 4 H 0.000 1.000 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.598 5.598 14 C 0.522 3.478 15 O -0.479 6.479 16 N -0.671 5.671 17 C 0.232 3.768 18 C -0.184 4.184 19 C -0.060 4.060 20 C -0.179 4.179 21 C 0.130 3.870 22 C -0.226 4.226 23 C -0.106 4.106 24 C 0.055 3.945 25 O -0.308 6.308 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.263 0.737 32 H 0.408 0.592 33 H 0.431 0.569 34 H 0.157 0.843 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.540 8.353 -2.019 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.122 3.878 4 H 0.018 0.982 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.340 5.340 14 C 0.208 3.792 15 O -0.277 6.277 16 N -0.314 5.314 17 C 0.132 3.868 18 C -0.205 4.205 19 C -0.079 4.079 20 C -0.199 4.199 21 C 0.084 3.916 22 C -0.231 4.231 23 C -0.143 4.143 24 C -0.020 4.020 25 O -0.222 6.222 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.265 0.735 33 H 0.275 0.725 34 H 0.174 0.826 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.489 8.274 -2.106 14.314 hybrid contribution 1.241 -0.338 0.851 1.542 sum -10.248 7.936 -1.255 13.022 Atomic orbital electron populations 1.21798 0.99417 0.99253 0.99650 1.21603 0.91393 0.99026 1.02750 1.18938 0.95272 0.90525 0.83080 0.98238 1.21101 0.90657 1.37460 1.05054 0.92161 1.24941 0.98498 0.95124 0.95581 1.69855 1.35076 1.38693 1.09575 0.86540 0.85202 0.78257 0.77321 1.20345 1.21233 1.20130 1.72549 1.16542 1.10616 1.34326 1.20015 0.89673 0.89464 0.80080 1.84713 1.69421 1.58451 1.15107 1.42949 1.37847 1.42077 1.08537 1.17194 0.88045 0.88884 0.92720 1.21448 1.02242 0.97387 0.99395 1.20662 0.93986 0.96696 0.96578 1.20064 1.04776 1.04380 0.90676 1.19253 0.91301 0.95282 0.85740 1.20359 1.01095 1.04952 0.96667 1.21738 0.98128 1.01749 0.92676 1.23783 0.96213 0.84458 0.97545 1.86805 1.72300 1.37764 1.25359 0.94659 0.94429 0.94489 0.93985 0.88382 0.92753 0.73511 0.72451 0.82644 0.85285 0.86024 0.89430 0.89097 0.87804 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.80 37.16 0.36 -2.55 16 2 C -0.11 -2.60 5.45 -26.73 -0.15 -2.75 16 3 C 0.23 5.63 2.25 -69.08 -0.16 5.48 16 4 H 0.00 0.01 5.45 -51.93 -0.28 -0.28 16 5 C -0.50 -13.77 8.84 -34.44 -0.30 -14.07 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.62 5.29 -17.82 -0.09 1.52 16 8 N -0.89 -24.41 11.29 55.43 0.63 -23.78 16 9 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.60 -13.05 9.53 -57.09 -0.54 -13.60 16 14 C 0.52 9.75 8.55 -88.41 -0.76 8.99 16 15 O -0.48 -7.06 9.62 -17.01 -0.16 -7.22 16 16 N -0.67 -12.12 5.24 -11.89 -0.06 -12.18 16 17 C 0.23 3.80 6.47 -83.85 -0.54 3.26 16 18 C -0.18 -2.69 8.86 -39.32 -0.35 -3.04 16 19 C -0.06 -0.76 10.01 -39.71 -0.40 -1.15 16 20 C -0.18 -2.35 10.06 -39.26 -0.39 -2.74 16 21 C 0.13 1.92 7.03 -38.98 -0.27 1.64 16 22 C -0.23 -3.48 6.19 -103.78 -0.64 -4.12 16 23 C -0.11 -1.41 7.00 -26.37 -0.18 -1.60 16 24 C 0.05 0.62 8.00 38.06 0.30 0.93 16 25 O -0.31 -4.34 11.11 -20.20 -0.22 -4.56 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.73 7.69 -51.93 -0.40 0.33 16 29 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.41 4.61 8.97 46.06 0.41 5.03 16 33 H 0.43 8.35 6.18 -40.82 -0.25 8.10 16 34 H 0.16 2.23 5.17 -52.02 -0.27 1.96 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -30.03 330.08 -8.44 -38.47 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -4.45 Total: 12.06 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -3.57 Total: -10.21 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.02 Total: -49.56 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.39 Total: -11.78 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.03 -8.44 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331217067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.033 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds