Wall clock time and date at job start Tue Mar 31 2020 06:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 H 1.09001 * 109.46915 * 55.00020 * 3 2 1 5 5 C 1.50703 * 109.47088 * 175.00120 * 3 2 1 6 6 H 1.08000 * 119.99666 * 119.99698 * 5 3 2 7 7 C 1.37874 * 120.00047 * 300.00382 * 5 3 2 8 8 N 1.31521 * 119.99949 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00085 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47446 * 59.99656 * 9 7 5 11 11 H 1.48509 * 109.47296 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47237 * 299.99421 * 9 7 5 13 13 N 1.46501 * 109.46888 * 294.99917 * 3 2 1 14 14 C 1.30094 * 119.99760 * 116.20248 * 13 3 2 15 15 O 1.35101 * 120.00102 * 187.57611 * 14 13 3 16 16 N 1.37514 * 119.99833 * 7.58383 * 14 13 3 17 17 C 1.39873 * 119.99876 * 189.04362 * 16 14 13 18 18 C 1.39060 * 120.08517 * 334.28924 * 17 16 14 19 19 C 1.38113 * 119.68318 * 180.02562 * 18 17 16 20 20 C 1.38019 * 120.43268 * 0.21978 * 19 18 17 21 21 C 1.39315 * 120.39138 * 0.02562 * 20 19 18 22 22 C 1.38330 * 120.08622 * 154.30975 * 17 16 14 23 23 C 1.51926 * 132.11852 * 358.81561 * 22 17 16 24 24 C 1.54717 * 101.78665 * 195.79361 * 23 22 17 25 25 O 1.36144 * 129.85140 * 179.51264 * 21 20 19 26 26 H 1.08996 * 109.47212 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47107 * 299.99934 * 1 2 3 28 28 H 1.08997 * 109.47183 * 60.00174 * 1 2 3 29 29 H 1.09005 * 109.47107 * 240.00066 * 2 1 3 30 30 H 1.09003 * 109.47441 * 120.00164 * 2 1 3 31 31 H 0.96992 * 120.00076 * 180.02562 * 8 7 5 32 32 H 0.96702 * 114.00215 * 0.02562 * 15 14 13 33 33 H 0.97001 * 120.00028 * 9.04183 * 16 14 13 34 34 H 1.08000 * 120.15409 * 0.03292 * 18 17 16 35 35 H 1.08000 * 119.78276 * 180.19892 * 19 18 17 36 36 H 1.07999 * 119.80351 * 180.02562 * 20 19 18 37 37 H 1.08997 * 110.90308 * 77.73007 * 23 22 17 38 38 H 1.08997 * 111.10718 * 313.94912 * 23 22 17 39 39 H 1.08995 * 110.74975 * 216.53824 * 24 23 22 40 40 H 1.08998 * 110.75215 * 93.36009 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0049 0.8811 1.3817 10 1 6.4995 2.2814 1.3821 11 1 6.3978 0.2175 2.6508 12 1 6.5975 0.1472 0.2348 13 7 1.6525 2.0975 -1.2518 14 6 0.8390 3.1125 -1.2301 15 8 0.3609 3.6199 -2.3874 16 7 0.4660 3.6690 -0.0293 17 6 -0.5484 4.6313 0.0105 18 6 -0.8131 5.4118 -1.1095 19 6 -1.8163 6.3598 -1.0610 20 6 -2.5531 6.5396 0.0922 21 6 -2.2935 5.7670 1.2221 22 6 -1.2907 4.8092 1.1642 23 6 -1.2586 4.1125 2.5139 24 6 -2.6100 4.5498 3.1274 25 8 -2.8861 5.7869 2.4476 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8293 -0.0605 2.9501 32 1 0.6787 3.1630 -3.1782 33 1 0.9063 3.3943 0.7902 34 1 -0.2370 5.2772 -2.0131 35 1 -2.0254 6.9647 -1.9309 36 1 -3.3355 7.2836 0.1188 37 1 -0.4236 4.4700 3.1163 38 1 -1.2166 3.0298 2.3959 39 1 -2.5120 4.7133 4.2005 40 1 -3.3851 3.8122 2.9197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331217067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:04 Heat of formation + Delta-G solvation = -33.929853 kcal Electronic energy + Delta-G solvation = -23430.078807 eV Core-core repulsion = 20017.337105 eV Total energy + Delta-G solvation = -3412.741702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.10544 -40.55119 -38.28907 -37.43139 -35.77635 -34.08257 -33.18511 -32.25335 -30.41235 -29.34651 -28.54544 -25.21897 -24.41198 -23.92000 -22.59624 -22.43940 -21.07126 -19.21800 -18.50205 -18.33299 -17.71235 -17.42752 -17.15640 -16.49660 -16.42950 -16.05927 -15.75163 -15.12900 -14.75319 -14.38964 -14.22054 -14.06754 -13.94947 -13.83114 -13.59270 -13.16226 -12.86535 -12.74339 -12.73410 -12.43525 -12.22079 -12.11881 -12.02058 -11.78269 -11.63143 -11.56602 -11.25993 -10.66239 -10.04860 -9.78977 -9.16355 -8.57742 -8.12109 -6.26688 0.35316 0.44080 1.39594 1.40665 1.48516 1.79111 1.89699 2.34231 2.41079 2.83856 3.11899 3.16811 3.53913 3.69679 4.07334 4.10441 4.19926 4.36547 4.46518 4.51003 4.54916 4.56354 4.65403 4.70775 4.80821 4.83244 4.93358 5.07325 5.18261 5.24770 5.38400 5.41962 5.55151 5.56925 5.66392 5.70788 5.95594 5.98206 6.14099 6.27354 6.37221 6.64610 6.88998 7.37530 7.63124 8.89180 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.004763 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.863740 B = 5877.752687 C = 6406.997368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C 0.236 3.764 4 H -0.013 1.013 5 C -0.527 4.527 6 H 0.043 0.957 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.275 1.275 13 N -0.633 5.633 14 C 0.541 3.459 15 O -0.462 6.462 16 N -0.676 5.676 17 C 0.203 3.797 18 C -0.191 4.191 19 C -0.051 4.051 20 C -0.174 4.174 21 C 0.116 3.884 22 C -0.241 4.241 23 C -0.109 4.109 24 C 0.057 3.943 25 O -0.317 6.317 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.424 0.576 33 H 0.422 0.578 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.880 9.701 -2.432 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.143 4.143 3 C 0.128 3.872 4 H 0.004 0.996 5 C -0.566 4.566 6 H 0.061 0.939 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.200 1.200 13 N -0.378 5.378 14 C 0.228 3.772 15 O -0.262 6.262 16 N -0.318 5.318 17 C 0.104 3.896 18 C -0.212 4.212 19 C -0.070 4.070 20 C -0.194 4.194 21 C 0.070 3.930 22 C -0.245 4.245 23 C -0.147 4.147 24 C -0.017 4.017 25 O -0.231 6.231 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.284 0.716 33 H 0.264 0.736 34 H 0.175 0.825 35 H 0.184 0.816 36 H 0.165 0.835 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.149 0.851 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.873 9.660 -2.544 16.295 hybrid contribution 1.532 -0.623 0.942 1.903 sum -11.341 9.037 -1.602 14.590 Atomic orbital electron populations 1.21614 0.96688 1.00535 0.99705 1.21447 0.93797 0.98489 1.00610 1.18675 0.93692 0.90902 0.83964 0.99604 1.21366 0.92485 1.37817 1.04926 0.93894 1.25608 1.02367 0.94752 0.95269 1.69958 1.36420 1.38876 1.09769 0.85655 0.80564 0.78211 0.77438 1.20134 1.20354 1.20005 1.72473 1.19769 1.12971 1.32591 1.20107 0.87838 0.88095 0.81199 1.84738 1.68746 1.57982 1.14705 1.42921 1.38390 1.42613 1.07855 1.17474 0.88448 0.89579 0.94070 1.21615 1.02957 0.97747 0.98870 1.21059 0.92455 0.95835 0.97607 1.20490 1.04856 1.03970 0.90094 1.19558 0.91357 0.95535 0.86521 1.20610 1.01320 1.05531 0.97069 1.21786 0.99489 1.01135 0.92250 1.23984 0.95160 0.83898 0.98661 1.86786 1.72247 1.38901 1.25202 0.92708 0.94507 0.94129 0.95374 0.91015 0.92659 0.71615 0.73623 0.82468 0.81600 0.83498 0.89670 0.89939 0.85136 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.80 71.98 0.71 -4.46 16 2 C -0.10 -5.12 5.45 30.60 0.17 -4.95 16 3 C 0.24 11.94 2.25 44.25 0.10 12.04 16 4 H -0.01 -0.70 5.45 -2.39 -0.01 -0.71 16 5 C -0.53 -29.67 8.84 25.60 0.23 -29.45 16 6 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -50.83 11.29 21.45 0.24 -50.59 16 9 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 N -0.63 -28.09 9.53 -448.78 -4.28 -32.37 16 14 C 0.54 20.19 8.55 179.57 1.54 21.73 16 15 O -0.46 -13.03 9.62 -83.76 -0.81 -13.84 16 16 N -0.68 -24.73 5.24 -301.89 -1.58 -26.31 16 17 C 0.20 6.54 6.47 38.08 0.25 6.79 16 18 C -0.19 -5.26 8.86 22.44 0.20 -5.06 16 19 C -0.05 -1.12 10.01 22.19 0.22 -0.90 16 20 C -0.17 -4.07 10.06 22.48 0.23 -3.84 16 21 C 0.12 3.23 7.03 22.66 0.16 3.39 16 22 C -0.24 -7.29 6.19 -19.32 -0.12 -7.41 16 23 C -0.11 -2.91 7.00 30.83 0.22 -2.69 16 24 C 0.06 1.21 8.00 72.57 0.58 1.79 16 25 O -0.32 -8.33 11.11 -95.19 -1.06 -9.39 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.04 1.58 7.69 -2.39 -0.02 1.56 16 29 H 0.03 1.39 8.14 -2.38 -0.02 1.38 16 30 H 0.07 3.86 5.95 -2.39 -0.01 3.85 16 31 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.42 8.94 8.97 -73.24 -0.66 8.28 16 33 H 0.42 16.99 6.18 -92.71 -0.57 16.42 16 34 H 0.16 4.20 5.17 -2.62 -0.01 4.18 16 35 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -65.42 330.08 -0.69 -66.11 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.14 Total: 32.11 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 4.91 Total: -11.50 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -5.62 Total: -109.27 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.86 Total: -23.23 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -65.42 -0.69 -66.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331217067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.182 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds