Wall clock time and date at job start Tue Mar 31 2020 06:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 H 1.08998 * 109.47513 * 305.00247 * 3 2 1 5 5 C 1.50694 * 109.47409 * 184.99870 * 3 2 1 6 6 H 1.07999 * 120.00496 * 239.99820 * 5 3 2 7 7 C 1.37880 * 120.00028 * 60.00359 * 5 3 2 8 8 N 1.31518 * 119.99545 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00249 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47609 * 59.99180 * 9 7 5 11 11 H 1.48501 * 109.47189 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46909 * 299.99419 * 9 7 5 13 13 N 1.46500 * 109.47054 * 64.99829 * 3 2 1 14 14 C 1.30095 * 120.00247 * 235.00415 * 13 3 2 15 15 O 1.35101 * 120.00340 * 185.27863 * 14 13 3 16 16 N 1.37520 * 119.99863 * 5.28638 * 14 13 3 17 17 C 1.39873 * 119.99824 * 186.01749 * 16 14 13 18 18 C 1.39055 * 120.08431 * 24.88511 * 17 16 14 19 19 C 1.38120 * 119.68111 * 179.97438 * 18 17 16 20 20 C 1.38017 * 120.42893 * 359.77658 * 19 18 17 21 21 C 1.39310 * 120.39620 * 0.09151 * 20 19 18 22 22 C 1.38326 * 120.08088 * 204.61058 * 17 16 14 23 23 C 1.51640 * 132.17629 * 1.64588 * 22 17 16 24 24 C 1.54712 * 101.98976 * 163.75236 * 23 22 17 25 25 O 1.36143 * 129.85885 * 180.62491 * 21 20 19 26 26 H 1.09002 * 109.47349 * 59.99563 * 1 2 3 27 27 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47325 * 300.00104 * 1 2 3 29 29 H 1.08996 * 109.47198 * 240.00408 * 2 1 3 30 30 H 1.08997 * 109.47123 * 119.99743 * 2 1 3 31 31 H 0.97000 * 119.99264 * 180.02562 * 8 7 5 32 32 H 0.96705 * 113.99908 * 0.02562 * 15 14 13 33 33 H 0.96997 * 119.99799 * 6.29104 * 16 14 13 34 34 H 1.07990 * 120.15650 * 359.95729 * 18 17 16 35 35 H 1.07998 * 119.78230 * 179.79178 * 19 18 17 36 36 H 1.08003 * 119.79869 * 180.02562 * 20 19 18 37 37 H 1.08998 * 111.10807 * 45.48437 * 23 22 17 38 38 H 1.09004 * 110.74485 * 281.85897 * 23 22 17 39 39 H 1.08999 * 110.75052 * 266.68266 * 24 23 22 40 40 H 1.09005 * 110.90532 * 143.39583 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8802 -1.3811 10 1 6.5967 0.1455 -0.2343 11 1 6.3978 0.2159 -2.6498 12 1 6.5004 2.2801 -1.3808 13 7 1.6524 2.0975 1.2518 14 6 0.9806 3.2112 1.2224 15 8 0.7153 3.8707 2.3713 16 7 0.5403 3.7170 0.0218 17 6 -0.0710 4.9743 -0.0253 18 6 0.2042 5.9203 0.9560 19 6 -0.4036 7.1594 0.9010 20 6 -1.2772 7.4646 -0.1230 21 6 -1.5583 6.5258 -1.1131 22 6 -0.9463 5.2816 -1.0514 23 6 -1.4596 4.4743 -2.2279 24 6 -2.6875 5.3026 -2.6748 25 8 -2.3688 6.6228 -2.2026 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0616 -2.9495 32 1 1.0651 3.4386 3.1626 33 1 0.6500 3.2002 -0.7917 34 1 0.8896 5.6872 1.7573 35 1 -0.1937 7.8942 1.6641 36 1 -1.7465 8.4368 -0.1562 37 1 -1.7574 3.4730 -1.9168 38 1 -0.7120 4.4277 -3.0198 39 1 -3.5966 4.9316 -2.2013 40 1 -2.7880 5.2945 -3.7601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331217068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:06 Heat of formation + Delta-G solvation = -14.694235 kcal Electronic energy + Delta-G solvation = -23350.867291 eV Core-core repulsion = 19938.959708 eV Total energy + Delta-G solvation = -3411.907583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03596 -39.19381 -37.13625 -35.82855 -34.35175 -32.42813 -31.79468 -30.73072 -29.36868 -28.02729 -26.76745 -23.50209 -23.33269 -22.58931 -21.33593 -21.14105 -19.42559 -18.00092 -17.13259 -16.50395 -16.40811 -16.13922 -15.98205 -15.34010 -14.90751 -14.45947 -14.41826 -13.53769 -13.32524 -13.12351 -12.96893 -12.86972 -12.60375 -12.37046 -12.18161 -11.74518 -11.49690 -11.25692 -11.09022 -11.02306 -10.95799 -10.85005 -10.41855 -10.21239 -9.95860 -9.76751 -9.51769 -8.76171 -8.43760 -8.18372 -8.03513 -7.13537 -6.09483 -4.15552 1.45882 1.58077 3.14607 3.27902 3.30194 3.31909 3.34037 3.42837 3.97981 4.36711 4.49226 4.58583 4.67516 4.98441 5.16298 5.19632 5.28435 5.38905 5.51135 5.68771 5.74182 5.81313 5.83751 6.07883 6.18398 6.21809 6.35992 6.42561 6.45358 6.63722 6.69999 6.85345 6.90252 7.16192 7.25381 7.36481 7.41703 7.59437 7.75353 7.93635 8.20804 8.31380 8.84751 9.13140 9.51331 10.95058 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.004649 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.233076 B = 6021.416046 C = 6242.281124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.230 3.770 4 H -0.001 1.001 5 C -0.502 4.502 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.599 5.599 14 C 0.523 3.477 15 O -0.480 6.480 16 N -0.671 5.671 17 C 0.236 3.764 18 C -0.178 4.178 19 C -0.059 4.059 20 C -0.179 4.179 21 C 0.130 3.870 22 C -0.228 4.228 23 C -0.106 4.106 24 C 0.056 3.944 25 O -0.308 6.308 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.098 0.902 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.411 0.589 33 H 0.430 0.570 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 9.485 2.351 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C 0.122 3.878 4 H 0.016 0.984 5 C -0.541 4.541 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.341 5.341 14 C 0.208 3.792 15 O -0.278 6.278 16 N -0.314 5.314 17 C 0.135 3.865 18 C -0.199 4.199 19 C -0.078 4.078 20 C -0.199 4.199 21 C 0.085 3.915 22 C -0.233 4.233 23 C -0.143 4.143 24 C -0.019 4.019 25 O -0.222 6.222 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.268 0.732 33 H 0.274 0.726 34 H 0.165 0.835 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.741 9.387 2.439 14.472 hybrid contribution 1.047 -0.465 -0.828 1.413 sum -9.694 8.923 1.610 13.273 Atomic orbital electron populations 1.21814 0.99481 0.99375 0.99569 1.21595 0.91362 0.99169 1.02786 1.18935 0.95197 0.90609 0.83031 0.98372 1.21082 0.90487 1.37471 1.05064 0.92197 1.24938 0.98535 0.95118 0.95543 1.69856 1.35091 1.38636 1.09606 0.86526 0.85128 0.78271 0.77330 1.20121 1.21214 1.20321 1.72571 1.19122 1.08234 1.34187 1.19924 0.91081 0.88051 0.80131 1.84700 1.77607 1.49881 1.15569 1.42944 1.61945 1.17652 1.08828 1.17156 0.90438 0.85614 0.93307 1.21184 1.04612 0.92610 1.01525 1.20645 0.94496 0.96033 0.96585 1.20048 1.05319 0.99674 0.94876 1.19246 0.90770 0.94063 0.87462 1.20259 1.04203 0.97957 1.00903 1.21672 0.97268 0.99475 0.95870 1.23774 0.97487 0.80113 1.00573 1.86798 1.64687 1.29692 1.41021 0.94495 0.94575 0.94400 0.88432 0.93915 0.92744 0.73223 0.72562 0.83460 0.85249 0.86004 0.89387 0.89375 0.90727 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.80 37.16 0.36 -2.54 16 2 C -0.11 -2.63 5.45 -26.73 -0.15 -2.78 16 3 C 0.23 5.66 2.27 -69.08 -0.16 5.50 16 4 H 0.00 -0.03 5.38 -51.93 -0.28 -0.30 16 5 C -0.50 -13.79 8.84 -34.44 -0.30 -14.09 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 8 N -0.89 -24.57 11.29 55.43 0.63 -23.95 16 9 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.60 -13.08 9.53 -57.09 -0.54 -13.62 16 14 C 0.52 9.84 8.50 -88.40 -0.75 9.09 16 15 O -0.48 -7.21 10.00 -17.01 -0.17 -7.38 16 16 N -0.67 -12.21 5.30 -11.89 -0.06 -12.28 16 17 C 0.24 3.90 6.44 -83.85 -0.54 3.36 16 18 C -0.18 -2.68 8.69 -39.32 -0.34 -3.02 16 19 C -0.06 -0.75 10.01 -39.71 -0.40 -1.15 16 20 C -0.18 -2.37 10.06 -39.26 -0.39 -2.77 16 21 C 0.13 1.92 7.03 -38.98 -0.27 1.65 16 22 C -0.23 -3.51 6.19 -103.92 -0.64 -4.15 16 23 C -0.11 -1.36 6.96 -26.52 -0.18 -1.55 16 24 C 0.06 0.61 8.01 38.06 0.30 0.91 16 25 O -0.31 -4.29 11.11 -20.20 -0.22 -4.52 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 29 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 30 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.41 4.73 8.97 45.56 0.41 5.14 16 33 H 0.43 8.29 6.04 -40.82 -0.25 8.05 16 34 H 0.15 2.20 5.66 -52.49 -0.30 1.90 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -30.34 330.59 -8.45 -38.79 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -4.48 Total: 11.78 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.56 Total: -9.99 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.02 Total: -49.84 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.39 Total: -11.90 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.34 -8.45 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331217068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.093 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds