Wall clock time and date at job start Tue Mar 31 2020 06:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 H 1.08998 * 109.47513 * 305.00247 * 3 2 1 5 5 C 1.50694 * 109.47409 * 184.99870 * 3 2 1 6 6 H 1.07999 * 120.00496 * 239.99820 * 5 3 2 7 7 C 1.37880 * 120.00028 * 60.00359 * 5 3 2 8 8 N 1.31518 * 119.99545 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00249 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47609 * 59.99180 * 9 7 5 11 11 H 1.48501 * 109.47189 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46909 * 299.99419 * 9 7 5 13 13 N 1.46500 * 109.47054 * 64.99829 * 3 2 1 14 14 C 1.30095 * 120.00247 * 235.00415 * 13 3 2 15 15 O 1.35101 * 120.00340 * 185.27863 * 14 13 3 16 16 N 1.37520 * 119.99863 * 5.28638 * 14 13 3 17 17 C 1.39873 * 119.99824 * 186.01749 * 16 14 13 18 18 C 1.39055 * 120.08431 * 24.88511 * 17 16 14 19 19 C 1.38120 * 119.68111 * 179.97438 * 18 17 16 20 20 C 1.38017 * 120.42893 * 359.77658 * 19 18 17 21 21 C 1.39310 * 120.39620 * 0.09151 * 20 19 18 22 22 C 1.38326 * 120.08088 * 204.61058 * 17 16 14 23 23 C 1.51640 * 132.17629 * 1.64588 * 22 17 16 24 24 C 1.54712 * 101.98976 * 163.75236 * 23 22 17 25 25 O 1.36143 * 129.85885 * 180.62491 * 21 20 19 26 26 H 1.09002 * 109.47349 * 59.99563 * 1 2 3 27 27 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47325 * 300.00104 * 1 2 3 29 29 H 1.08996 * 109.47198 * 240.00408 * 2 1 3 30 30 H 1.08997 * 109.47123 * 119.99743 * 2 1 3 31 31 H 0.97000 * 119.99264 * 180.02562 * 8 7 5 32 32 H 0.96705 * 113.99908 * 0.02562 * 15 14 13 33 33 H 0.96997 * 119.99799 * 6.29104 * 16 14 13 34 34 H 1.07990 * 120.15650 * 359.95729 * 18 17 16 35 35 H 1.07998 * 119.78230 * 179.79178 * 19 18 17 36 36 H 1.08003 * 119.79869 * 180.02562 * 20 19 18 37 37 H 1.08998 * 111.10807 * 45.48437 * 23 22 17 38 38 H 1.09004 * 110.74485 * 281.85897 * 23 22 17 39 39 H 1.08999 * 110.75052 * 266.68266 * 24 23 22 40 40 H 1.09005 * 110.90532 * 143.39583 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8802 -1.3811 10 1 6.5967 0.1455 -0.2343 11 1 6.3978 0.2159 -2.6498 12 1 6.5004 2.2801 -1.3808 13 7 1.6524 2.0975 1.2518 14 6 0.9806 3.2112 1.2224 15 8 0.7153 3.8707 2.3713 16 7 0.5403 3.7170 0.0218 17 6 -0.0710 4.9743 -0.0253 18 6 0.2042 5.9203 0.9560 19 6 -0.4036 7.1594 0.9010 20 6 -1.2772 7.4646 -0.1230 21 6 -1.5583 6.5258 -1.1131 22 6 -0.9463 5.2816 -1.0514 23 6 -1.4596 4.4743 -2.2279 24 6 -2.6875 5.3026 -2.6748 25 8 -2.3688 6.6228 -2.2026 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0616 -2.9495 32 1 1.0651 3.4386 3.1626 33 1 0.6500 3.2002 -0.7917 34 1 0.8896 5.6872 1.7573 35 1 -0.1937 7.8942 1.6641 36 1 -1.7465 8.4368 -0.1562 37 1 -1.7574 3.4730 -1.9168 38 1 -0.7120 4.4277 -3.0198 39 1 -3.5966 4.9316 -2.2013 40 1 -2.7880 5.2945 -3.7601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331217068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:05 Heat of formation + Delta-G solvation = -36.542111 kcal Electronic energy + Delta-G solvation = -23351.814686 eV Core-core repulsion = 19938.959708 eV Total energy + Delta-G solvation = -3412.854978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.11553 -40.54191 -38.30279 -37.43403 -35.77847 -34.08025 -33.19356 -32.27317 -30.42592 -29.34749 -28.52866 -25.23647 -24.41215 -23.92201 -22.59445 -22.44503 -21.07032 -19.23844 -18.49402 -18.35812 -17.61900 -17.46914 -17.17107 -16.44309 -16.42546 -16.00960 -15.83488 -15.08229 -14.77997 -14.38581 -14.19397 -14.08289 -13.92881 -13.83689 -13.63439 -13.15968 -12.86479 -12.78051 -12.73741 -12.55031 -12.23423 -12.11384 -12.04635 -11.78453 -11.63449 -11.47329 -11.30294 -10.67664 -10.00457 -9.85505 -9.16385 -8.57157 -8.11967 -6.27194 0.34962 0.42930 1.39035 1.40218 1.47901 1.78350 1.90858 2.34476 2.41745 2.83585 3.11563 3.20318 3.54448 3.69283 4.06375 4.11615 4.18857 4.35134 4.46296 4.50342 4.55190 4.55899 4.62563 4.71654 4.80677 4.82519 4.92611 5.06863 5.18622 5.23302 5.37250 5.41836 5.54691 5.56591 5.62939 5.69699 5.95975 5.98892 6.11782 6.27331 6.36638 6.62964 6.88732 7.36738 7.61751 8.88580 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.004649 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.233076 B = 6021.416046 C = 6242.281124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.106 4.106 3 C 0.236 3.764 4 H -0.015 1.015 5 C -0.526 4.526 6 H 0.043 0.957 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.276 1.276 13 N -0.632 5.632 14 C 0.541 3.459 15 O -0.464 6.464 16 N -0.676 5.676 17 C 0.205 3.795 18 C -0.189 4.189 19 C -0.051 4.051 20 C -0.175 4.175 21 C 0.117 3.883 22 C -0.242 4.242 23 C -0.110 4.110 24 C 0.057 3.943 25 O -0.318 6.318 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.427 0.573 33 H 0.422 0.578 34 H 0.146 0.854 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.772 11.059 2.612 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.145 4.145 3 C 0.128 3.872 4 H 0.002 0.998 5 C -0.565 4.565 6 H 0.061 0.939 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.202 1.202 13 N -0.377 5.377 14 C 0.227 3.773 15 O -0.264 6.264 16 N -0.318 5.318 17 C 0.106 3.894 18 C -0.210 4.210 19 C -0.069 4.069 20 C -0.195 4.195 21 C 0.071 3.929 22 C -0.246 4.246 23 C -0.147 4.147 24 C -0.017 4.017 25 O -0.232 6.232 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.286 0.714 33 H 0.264 0.736 34 H 0.164 0.836 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.779 11.006 2.724 16.349 hybrid contribution 1.260 -0.796 -0.878 1.730 sum -10.519 10.211 1.845 14.776 Atomic orbital electron populations 1.21639 0.96592 1.00717 0.99811 1.21437 0.93933 0.98493 1.00614 1.18675 0.93614 0.91044 0.83891 0.99797 1.21364 0.92377 1.37790 1.04932 0.93880 1.25619 1.02435 0.94773 0.95257 1.69959 1.36435 1.38848 1.09806 0.85644 0.80483 0.78197 0.77499 1.19881 1.20332 1.20185 1.72499 1.22514 1.10260 1.32426 1.20031 0.89043 0.87006 0.81205 1.84727 1.77172 1.49218 1.15247 1.42919 1.62210 1.18434 1.08205 1.17436 0.91741 0.85298 0.94878 1.21338 1.05030 0.93388 1.01225 1.21023 0.93200 0.95644 0.97026 1.20466 1.04582 1.00352 0.94057 1.19549 0.91069 0.94148 0.88110 1.20539 1.04002 0.98927 1.01160 1.21748 0.98130 0.99710 0.95086 1.24005 0.96907 0.78465 1.02314 1.86779 1.64468 1.31196 1.40747 0.94232 0.92623 0.94041 0.91068 0.95361 0.92661 0.71353 0.73575 0.83636 0.81716 0.83472 0.89380 0.89816 0.89141 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 9.80 71.98 0.71 -4.48 16 2 C -0.11 -5.17 5.45 30.59 0.17 -5.01 16 3 C 0.24 11.98 2.27 44.24 0.10 12.08 16 4 H -0.02 -0.80 5.38 -2.39 -0.01 -0.81 16 5 C -0.53 -29.71 8.84 25.60 0.23 -29.48 16 6 H 0.04 2.50 7.81 -2.91 -0.02 2.48 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -51.14 11.29 21.45 0.24 -50.90 16 9 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.63 -28.07 9.53 -448.79 -4.28 -32.34 16 14 C 0.54 20.41 8.50 179.57 1.53 21.94 16 15 O -0.46 -13.50 10.00 -83.76 -0.84 -14.34 16 16 N -0.68 -24.91 5.30 -301.89 -1.60 -26.51 16 17 C 0.21 6.72 6.44 38.07 0.25 6.97 16 18 C -0.19 -5.42 8.69 22.44 0.20 -5.22 16 19 C -0.05 -1.15 10.01 22.19 0.22 -0.93 16 20 C -0.17 -4.15 10.06 22.48 0.23 -3.92 16 21 C 0.12 3.25 7.03 22.66 0.16 3.41 16 22 C -0.24 -7.27 6.19 -19.41 -0.12 -7.39 16 23 C -0.11 -2.77 6.96 30.73 0.21 -2.56 16 24 C 0.06 1.14 8.01 72.57 0.58 1.72 16 25 O -0.32 -8.22 11.11 -95.18 -1.06 -9.28 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 1.60 7.75 -2.38 -0.02 1.58 16 29 H 0.07 3.83 5.95 -2.39 -0.01 3.82 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.43 9.30 8.97 -74.05 -0.66 8.63 16 33 H 0.42 16.83 6.04 -92.71 -0.56 16.27 16 34 H 0.15 4.15 5.66 -2.92 -0.02 4.13 16 35 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 36 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -66.07 330.59 -0.75 -66.81 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.14 Total: 31.93 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.90 Total: -11.39 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -5.63 Total: -109.75 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -1.89 Total: -23.62 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.07 -0.75 -66.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331217068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.271 kcal (2) G-P(sol) polarization free energy of solvation -66.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds