Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47095 * 2 1 4 4 C 1.50699 * 109.47208 * 119.99823 * 2 1 3 5 5 C 1.38358 * 119.45918 * 275.00254 * 4 2 1 6 6 C 1.38353 * 119.30208 * 179.97438 * 5 4 2 7 7 C 1.40029 * 118.28886 * 0.02562 * 6 5 4 8 8 C 1.47845 * 120.55680 * 179.97438 * 7 6 5 9 9 O 1.21551 * 119.99732 * 173.29890 * 8 7 6 10 10 N 1.34777 * 120.00229 * 353.29422 * 8 7 6 11 11 C 1.47576 * 134.49422 * 174.47997 * 10 8 7 12 12 C 1.53943 * 86.11721 * 155.35625 * 11 10 8 13 13 O 1.42896 * 113.74701 * 269.15312 * 12 11 10 14 14 C 1.50704 * 113.74031 * 137.95064 * 12 11 10 15 15 H 1.07999 * 119.99785 * 1.93007 * 14 12 11 16 16 C 1.37873 * 120.00238 * 181.93004 * 14 12 11 17 17 N 1.31514 * 119.99967 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00150 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46601 * 269.99778 * 18 16 14 20 20 H 1.48501 * 109.46969 * 29.99282 * 18 16 14 21 21 H 1.48501 * 109.47379 * 149.99735 * 18 16 14 22 22 C 1.47812 * 134.45426 * 354.34634 * 10 8 7 23 23 C 1.39517 * 118.88272 * 0.24821 * 7 6 5 24 24 N 1.31696 * 120.56447 * 359.50164 * 23 7 6 25 25 H 1.09000 * 109.46834 * 59.99804 * 1 2 3 26 26 H 1.08999 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47055 * 300.00794 * 1 2 3 28 28 H 1.09000 * 109.47361 * 239.99918 * 2 1 3 29 29 H 1.09001 * 109.46782 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46943 * 299.99673 * 3 2 1 31 31 H 1.09000 * 109.47083 * 59.99748 * 3 2 1 32 32 H 1.07998 * 120.34925 * 359.97126 * 5 4 2 33 33 H 1.08002 * 120.85668 * 180.02562 * 6 5 4 34 34 H 1.09001 * 113.76787 * 41.05978 * 11 10 8 35 35 H 1.09001 * 113.87175 * 269.67907 * 11 10 8 36 36 H 0.96697 * 114.00259 * 178.07274 * 13 12 11 37 37 H 0.96995 * 120.00091 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.76558 * 90.38112 * 22 10 8 39 39 H 1.08995 * 113.83882 * 318.92119 * 22 10 8 40 40 H 1.07996 * 119.71681 * 179.75227 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1601 -0.0093 2.4164 6 6 2.6211 -0.6648 3.5442 7 6 2.9427 -2.0234 3.4372 8 6 3.4403 -2.7728 4.6105 9 8 3.6006 -3.9756 4.5401 10 7 3.7162 -2.1222 5.7582 11 6 4.1160 -2.5427 7.1151 12 6 4.7332 -1.1394 7.2548 13 8 6.1023 -1.0701 6.8515 14 6 4.4823 -0.4969 8.5947 15 1 3.9411 -1.0352 9.3588 16 6 4.9436 0.7780 8.8452 17 7 5.6031 1.4332 7.9150 18 14 4.6332 1.5741 10.5063 19 1 3.3467 2.3149 10.4674 20 1 4.5681 0.5237 11.5541 21 1 5.7379 2.5163 10.8179 22 6 3.7420 -0.7004 6.1617 23 6 2.7913 -2.6566 2.2032 24 7 2.3439 -1.9903 1.1590 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.9028 1.0386 2.4613 33 1 2.7301 -0.1421 4.4830 34 1 4.8500 -3.3485 7.1269 35 1 3.2764 -2.7224 7.7865 36 1 6.4852 -0.1841 6.9099 37 1 5.9273 2.3303 8.0910 38 1 2.7910 -0.3370 6.5512 39 1 4.1778 -0.0381 5.4138 40 1 3.0392 -3.7031 2.1045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331981708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = -18.292129 kcal Electronic energy + Delta-G solvation = -22974.652661 eV Core-core repulsion = 19562.589062 eV Total energy + Delta-G solvation = -3412.063599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.60796 -39.30566 -37.37544 -35.56452 -34.10356 -32.60160 -32.28726 -30.39929 -28.55361 -27.39938 -25.73560 -25.61006 -24.17435 -23.18014 -21.04814 -20.05459 -18.91050 -17.56111 -16.78620 -16.63445 -16.07398 -15.44199 -15.09656 -14.86012 -14.66321 -14.38031 -14.15884 -13.94045 -13.43026 -13.09200 -13.06307 -12.77810 -12.52386 -12.33206 -12.14168 -12.04713 -11.64430 -11.37766 -11.34774 -11.17250 -11.11256 -11.07865 -10.58670 -10.37281 -9.90131 -9.80537 -9.47813 -9.25410 -8.93429 -8.84240 -8.46650 -7.93190 -6.46208 -4.56861 0.79478 1.30151 3.09781 3.18117 3.18930 3.22038 3.39500 4.00567 4.08992 4.13425 4.56337 4.74819 4.83412 4.92290 4.92899 5.00253 5.06281 5.12610 5.39254 5.44922 5.54340 5.59394 5.62720 5.74290 5.79895 5.83181 6.00736 6.03224 6.07917 6.13420 6.21872 6.30302 6.34732 6.49016 6.54366 6.71658 7.00272 7.56096 7.74122 7.95017 8.33518 8.46916 8.62357 9.14725 9.35349 10.60551 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.004160 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.543808 B = 6728.891339 C = 7714.925337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C -0.149 4.149 4 C 0.146 3.854 5 C -0.178 4.178 6 C -0.049 4.049 7 C -0.176 4.176 8 C 0.574 3.426 9 O -0.558 6.558 10 N -0.625 5.625 11 C 0.113 3.887 12 C 0.241 3.759 13 O -0.571 6.571 14 C -0.539 4.539 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.277 1.277 20 H -0.270 1.270 21 H -0.283 1.283 22 C 0.069 3.931 23 C 0.156 3.844 24 N -0.490 5.490 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.140 0.860 33 H 0.155 0.845 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.392 0.608 37 H 0.274 0.726 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 2.845 -10.899 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.206 4.206 4 C 0.009 3.991 5 C -0.198 4.198 6 C -0.075 4.075 7 C -0.181 4.181 8 C 0.364 3.636 9 O -0.439 6.439 10 N -0.358 5.358 11 C -0.008 4.008 12 C 0.199 3.801 13 O -0.383 6.383 14 C -0.577 4.577 15 H 0.091 0.909 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.195 1.195 21 H -0.209 1.209 22 C -0.053 4.053 23 C -0.002 4.002 24 N -0.199 5.199 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.247 0.753 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.988 1.229 -12.024 14.488 hybrid contribution 0.004 1.624 1.739 2.379 sum -7.984 2.854 -10.286 13.330 Atomic orbital electron populations 1.21799 0.93552 1.02368 1.02135 1.20076 0.96221 0.95464 0.94929 1.21941 1.01581 0.94739 1.02377 1.21421 0.93026 0.89999 0.94672 1.21956 1.02917 1.01792 0.93120 1.22502 0.91562 0.93302 1.00126 1.21071 1.05415 0.95332 0.96331 1.17662 0.77731 0.86237 0.81990 1.90712 1.55240 1.14235 1.83703 1.50095 1.65400 1.10962 1.09326 1.23491 0.97745 0.99939 0.79652 1.19835 0.80356 0.89194 0.90740 1.86077 1.25221 1.37746 1.89225 1.21503 1.37040 1.00102 0.99021 0.90949 1.25064 0.93572 0.96671 0.97647 1.69394 1.37265 1.13510 1.33614 0.86334 0.78058 0.79128 0.83042 1.20297 1.19499 1.20872 1.24516 1.01630 0.81147 0.98042 1.22924 0.90872 1.00084 0.86344 1.67577 1.12348 1.08504 1.31446 0.91862 0.92274 0.92399 0.89188 0.92194 0.91816 0.91946 0.84223 0.82800 0.90830 0.89315 0.75329 0.91621 0.89613 0.90761 0.81576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.18 37.16 0.34 -0.88 16 2 C -0.05 -0.48 3.23 -91.77 -0.30 -0.77 16 3 C -0.15 -1.23 8.61 37.16 0.32 -0.91 16 4 C 0.15 1.95 5.79 -82.51 -0.48 1.47 16 5 C -0.18 -2.34 9.16 -39.49 -0.36 -2.71 16 6 C -0.05 -0.76 9.19 -38.87 -0.36 -1.12 16 7 C -0.18 -3.11 5.89 -104.82 -0.62 -3.73 16 8 C 0.57 11.93 7.99 -12.33 -0.10 11.84 16 9 O -0.56 -12.90 17.13 5.32 0.09 -12.81 16 10 N -0.63 -13.01 3.60 -179.25 -0.65 -13.66 16 11 C 0.11 2.41 8.23 -2.97 -0.02 2.38 16 12 C 0.24 5.55 1.40 -90.85 -0.13 5.43 16 13 O -0.57 -14.32 13.48 -35.23 -0.48 -14.80 16 14 C -0.54 -12.98 8.61 -34.44 -0.30 -13.28 16 15 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 16 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 17 N -0.90 -21.85 11.20 55.43 0.62 -21.23 16 18 Si 0.91 18.80 29.54 -169.99 -5.02 13.78 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 C 0.07 1.40 5.64 -2.84 -0.02 1.39 16 23 C 0.16 2.57 10.77 -17.13 -0.18 2.38 16 24 N -0.49 -7.52 10.25 -9.14 -0.09 -7.62 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.48 6.48 -51.93 -0.34 0.15 16 32 H 0.14 1.46 6.29 -52.49 -0.33 1.13 16 33 H 0.15 2.38 4.24 -52.49 -0.22 2.16 16 34 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 36 H 0.39 9.87 6.60 45.56 0.30 10.17 16 37 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 38 H 0.09 1.63 8.01 -51.93 -0.42 1.22 16 39 H 0.07 1.50 6.89 -51.93 -0.36 1.14 16 40 H 0.17 2.62 7.68 -52.49 -0.40 2.22 16 LS Contribution 332.99 15.07 5.02 5.02 Total: -1.00 -27.93 332.99 -7.49 -35.42 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -4.69 Total: 12.75 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -2.29 Total: 3.14 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.12 Total: -42.50 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.38 Total: -27.61 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.93 -7.49 -35.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331981708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.123 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds