Wall clock time and date at job start Tue Mar 31 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47095 * 2 1 4 4 C 1.50699 * 109.47208 * 119.99823 * 2 1 3 5 5 C 1.38358 * 119.45918 * 275.00254 * 4 2 1 6 6 C 1.38353 * 119.30208 * 179.97438 * 5 4 2 7 7 C 1.40029 * 118.28886 * 0.02562 * 6 5 4 8 8 C 1.47845 * 120.55680 * 179.97438 * 7 6 5 9 9 O 1.21551 * 119.99732 * 173.29890 * 8 7 6 10 10 N 1.34777 * 120.00229 * 353.29422 * 8 7 6 11 11 C 1.47576 * 134.49422 * 174.47997 * 10 8 7 12 12 C 1.53943 * 86.11721 * 155.35625 * 11 10 8 13 13 O 1.42896 * 113.74701 * 269.15312 * 12 11 10 14 14 C 1.50704 * 113.74031 * 137.95064 * 12 11 10 15 15 H 1.07999 * 119.99785 * 1.93007 * 14 12 11 16 16 C 1.37873 * 120.00238 * 181.93004 * 14 12 11 17 17 N 1.31514 * 119.99967 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00150 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46601 * 269.99778 * 18 16 14 20 20 H 1.48501 * 109.46969 * 29.99282 * 18 16 14 21 21 H 1.48501 * 109.47379 * 149.99735 * 18 16 14 22 22 C 1.47812 * 134.45426 * 354.34634 * 10 8 7 23 23 C 1.39517 * 118.88272 * 0.24821 * 7 6 5 24 24 N 1.31696 * 120.56447 * 359.50164 * 23 7 6 25 25 H 1.09000 * 109.46834 * 59.99804 * 1 2 3 26 26 H 1.08999 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47055 * 300.00794 * 1 2 3 28 28 H 1.09000 * 109.47361 * 239.99918 * 2 1 3 29 29 H 1.09001 * 109.46782 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46943 * 299.99673 * 3 2 1 31 31 H 1.09000 * 109.47083 * 59.99748 * 3 2 1 32 32 H 1.07998 * 120.34925 * 359.97126 * 5 4 2 33 33 H 1.08002 * 120.85668 * 180.02562 * 6 5 4 34 34 H 1.09001 * 113.76787 * 41.05978 * 11 10 8 35 35 H 1.09001 * 113.87175 * 269.67907 * 11 10 8 36 36 H 0.96697 * 114.00259 * 178.07274 * 13 12 11 37 37 H 0.96995 * 120.00091 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.76558 * 90.38112 * 22 10 8 39 39 H 1.08995 * 113.83882 * 318.92119 * 22 10 8 40 40 H 1.07996 * 119.71681 * 179.75227 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1601 -0.0093 2.4164 6 6 2.6211 -0.6648 3.5442 7 6 2.9427 -2.0234 3.4372 8 6 3.4403 -2.7728 4.6105 9 8 3.6006 -3.9756 4.5401 10 7 3.7162 -2.1222 5.7582 11 6 4.1160 -2.5427 7.1151 12 6 4.7332 -1.1394 7.2548 13 8 6.1023 -1.0701 6.8515 14 6 4.4823 -0.4969 8.5947 15 1 3.9411 -1.0352 9.3588 16 6 4.9436 0.7780 8.8452 17 7 5.6031 1.4332 7.9150 18 14 4.6332 1.5741 10.5063 19 1 3.3467 2.3149 10.4674 20 1 4.5681 0.5237 11.5541 21 1 5.7379 2.5163 10.8179 22 6 3.7420 -0.7004 6.1617 23 6 2.7913 -2.6566 2.2032 24 7 2.3439 -1.9903 1.1590 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.9028 1.0386 2.4613 33 1 2.7301 -0.1421 4.4830 34 1 4.8500 -3.3485 7.1269 35 1 3.2764 -2.7224 7.7865 36 1 6.4852 -0.1841 6.9099 37 1 5.9273 2.3303 8.0910 38 1 2.7910 -0.3370 6.5512 39 1 4.1778 -0.0381 5.4138 40 1 3.0392 -3.7031 2.1045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331981708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:48 Heat of formation + Delta-G solvation = -36.634758 kcal Electronic energy + Delta-G solvation = -22975.448057 eV Core-core repulsion = 19562.589062 eV Total energy + Delta-G solvation = -3412.858995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.92936 -40.81753 -39.04449 -36.49320 -35.91548 -34.16413 -33.84557 -31.60214 -30.18150 -28.05701 -27.38681 -27.28337 -25.41185 -24.39053 -22.33893 -21.35074 -20.51002 -19.34913 -18.25455 -18.01685 -17.31339 -17.04968 -16.62581 -16.46880 -15.94806 -15.71342 -15.32886 -15.09404 -14.87230 -14.55452 -14.26434 -14.13329 -13.80892 -13.69241 -13.51466 -13.42942 -12.89939 -12.85758 -12.74408 -12.27444 -12.24277 -12.20242 -12.08055 -11.88128 -11.50093 -11.10546 -11.01527 -10.70792 -10.61048 -10.23001 -10.11198 -9.61545 -8.26979 -6.43941 -0.45362 0.11572 1.47228 1.51800 1.60007 1.72418 1.79632 2.41042 2.71882 2.95154 3.03199 3.37356 3.56996 3.70217 3.78361 3.90336 4.08084 4.09878 4.16212 4.26799 4.41495 4.51248 4.55647 4.65332 4.71328 4.78493 4.82932 4.86331 4.90734 4.91553 5.01826 5.03959 5.19947 5.20376 5.37031 5.42414 5.54080 5.72339 5.91385 6.61952 6.67576 6.79862 6.98731 7.29572 7.42761 8.79218 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.004160 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.543808 B = 6728.891339 C = 7714.925337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C -0.147 4.147 4 C 0.150 3.850 5 C -0.169 4.169 6 C -0.051 4.051 7 C -0.200 4.200 8 C 0.570 3.430 9 O -0.591 6.591 10 N -0.628 5.628 11 C 0.112 3.888 12 C 0.220 3.780 13 O -0.587 6.587 14 C -0.557 4.557 15 H 0.073 0.927 16 C 0.037 3.963 17 N -0.915 5.915 18 Si 0.967 3.033 19 H -0.270 1.270 20 H -0.273 1.273 21 H -0.285 1.285 22 C 0.087 3.913 23 C 0.152 3.848 24 N -0.501 5.501 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.174 0.826 33 H 0.155 0.845 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.388 0.612 37 H 0.276 0.724 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 4.945 -11.621 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.066 4.066 3 C -0.204 4.204 4 C 0.012 3.988 5 C -0.188 4.188 6 C -0.077 4.077 7 C -0.205 4.205 8 C 0.361 3.639 9 O -0.475 6.475 10 N -0.360 5.360 11 C -0.010 4.010 12 C 0.179 3.821 13 O -0.399 6.399 14 C -0.595 4.595 15 H 0.091 0.909 16 C -0.164 4.164 17 N -0.555 5.555 18 Si 0.792 3.208 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.210 1.210 22 C -0.035 4.035 23 C -0.006 4.006 24 N -0.210 5.210 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.191 0.809 33 H 0.172 0.828 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.242 0.758 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.497 3.333 -12.752 16.245 hybrid contribution 0.469 0.988 1.881 2.176 sum -9.028 4.321 -10.870 14.776 Atomic orbital electron populations 1.21795 0.92196 1.01983 1.03562 1.20223 0.97177 0.96203 0.93024 1.21952 1.01096 0.93444 1.03921 1.22127 0.91119 0.89354 0.96174 1.22288 1.01405 1.03174 0.91949 1.22542 0.91647 0.92412 1.01070 1.20863 1.07843 0.96317 0.95443 1.18164 0.77050 0.86105 0.82562 1.90676 1.56803 1.15706 1.84288 1.50107 1.65436 1.11144 1.09280 1.23537 0.98133 0.98715 0.80612 1.20118 0.79918 0.90500 0.91551 1.86066 1.26729 1.37585 1.89473 1.21703 1.37602 1.00583 0.99572 0.90873 1.25693 0.93307 0.96997 1.00391 1.69454 1.37475 1.13735 1.34816 0.85418 0.77970 0.78031 0.79391 1.19498 1.19734 1.21038 1.24346 1.01433 0.80853 0.96873 1.22907 0.91078 1.00228 0.86379 1.67662 1.12813 1.09681 1.30832 0.89548 0.93586 0.91910 0.89318 0.92990 0.89711 0.91048 0.80898 0.82800 0.92117 0.87317 0.75780 0.91401 0.88026 0.90706 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.18 71.98 0.66 -1.30 16 2 C -0.05 -0.81 3.23 -11.54 -0.04 -0.85 16 3 C -0.15 -1.89 8.61 71.98 0.62 -1.27 16 4 C 0.15 3.68 5.79 42.57 0.25 3.93 16 5 C -0.17 -4.02 9.16 22.33 0.20 -3.82 16 6 C -0.05 -1.53 9.19 22.73 0.21 -1.32 16 7 C -0.20 -7.06 5.89 -19.99 -0.12 -7.18 16 8 C 0.57 24.13 7.99 86.79 0.69 24.83 16 9 O -0.59 -28.21 17.13 -3.88 -0.07 -28.27 16 10 N -0.63 -26.32 3.60 -843.12 -3.04 -29.35 16 11 C 0.11 4.80 8.23 86.49 0.71 5.51 16 12 C 0.22 10.21 1.40 -10.88 -0.02 10.19 16 13 O -0.59 -29.95 13.48 -148.98 -2.01 -31.96 16 14 C -0.56 -26.60 8.61 25.60 0.22 -26.38 16 15 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 16 C 0.04 1.75 5.39 84.65 0.46 2.20 16 17 N -0.91 -43.99 11.20 21.45 0.24 -43.75 16 18 Si 0.97 37.75 29.54 68.60 2.03 39.77 16 19 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 22 C 0.09 3.49 5.64 86.44 0.49 3.98 16 23 C 0.15 5.04 10.77 85.02 0.92 5.96 16 24 N -0.50 -14.97 10.25 -182.82 -1.87 -16.84 16 25 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.80 6.48 -2.39 -0.02 0.79 16 32 H 0.17 2.93 6.29 -2.91 -0.02 2.91 16 33 H 0.15 4.55 4.24 -2.91 -0.01 4.54 16 34 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.11 4.16 8.09 -2.39 -0.02 4.14 16 36 H 0.39 19.89 6.60 -74.06 -0.49 19.40 16 37 H 0.28 12.60 8.31 -92.71 -0.77 11.83 16 38 H 0.10 3.74 8.01 -2.39 -0.02 3.72 16 39 H 0.07 2.98 6.89 -2.39 -0.02 2.97 16 40 H 0.16 5.34 7.68 -2.91 -0.02 5.32 16 Total: -1.00 -59.69 332.99 1.12 -58.57 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.58 Total: 37.34 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 5.26 Total: 14.49 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -4.67 Total: -89.94 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -2.08 Total: -60.23 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.77 kcal Total: -59.69 1.12 -58.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331981708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.938 kcal (2) G-P(sol) polarization free energy of solvation -59.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds