Wall clock time and date at job start Tue Mar 31 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47262 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00364 * 2 1 3 5 5 C 1.38624 * 120.32731 * 120.27168 * 4 2 1 6 6 C 1.38592 * 118.48658 * 180.28609 * 5 4 2 7 7 C 1.39309 * 119.06042 * 359.72649 * 6 5 4 8 8 C 1.48165 * 119.72254 * 180.02562 * 7 6 5 9 9 O 1.21519 * 119.99987 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99972 * 179.97438 * 8 7 6 11 11 C 1.47064 * 136.05906 * 359.62047 * 10 8 7 12 12 C 1.53754 * 87.89078 * 152.96809 * 11 10 8 13 13 O 1.42901 * 114.39390 * 272.68112 * 12 11 10 14 14 C 1.50696 * 114.26936 * 139.79311 * 12 11 10 15 15 H 1.07994 * 120.00191 * 266.47770 * 14 12 11 16 16 C 1.37881 * 119.99831 * 86.47886 * 14 12 11 17 17 N 1.31516 * 119.99983 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 119.99982 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46646 * 59.99687 * 18 16 14 20 20 H 1.48490 * 109.46999 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46992 * 299.99929 * 18 16 14 22 22 C 1.47069 * 136.05665 * 179.97438 * 10 8 7 23 23 N 1.32717 * 120.55030 * 359.97438 * 7 6 5 24 24 C 1.31520 * 121.64619 * 0.02562 * 23 7 6 25 25 H 1.09003 * 109.46994 * 299.99830 * 1 2 3 26 26 H 1.09000 * 109.47507 * 59.99830 * 1 2 3 27 27 H 1.09002 * 109.47597 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46738 * 239.99518 * 2 1 3 29 29 H 1.09003 * 109.46634 * 299.99822 * 3 2 1 30 30 H 1.08995 * 109.47143 * 59.99851 * 3 2 1 31 31 H 1.08998 * 109.46613 * 180.02562 * 3 2 1 32 32 H 1.07999 * 120.75624 * 0.02562 * 5 4 2 33 33 H 1.08004 * 120.46874 * 179.71080 * 6 5 4 34 34 H 1.09003 * 113.47351 * 267.70118 * 11 10 8 35 35 H 1.09007 * 113.46577 * 38.14284 * 11 10 8 36 36 H 0.96697 * 114.00039 * 273.58183 * 13 12 11 37 37 H 0.97005 * 119.99494 * 180.02562 * 17 16 14 38 38 H 1.09003 * 113.47039 * 321.86053 * 22 10 8 39 39 H 1.09005 * 113.47146 * 92.24347 * 22 10 8 40 40 H 1.08002 * 119.54502 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8343 -1.8349 1.1111 6 6 3.2699 -2.4619 2.2677 7 6 2.8935 -1.9399 3.5032 8 6 3.3514 -2.5983 4.7491 9 8 4.0519 -3.5895 4.6905 10 7 2.9910 -2.0977 5.9474 11 6 2.1916 -0.9581 6.4220 12 6 1.8942 -1.7695 7.6937 13 8 0.7582 -2.6305 7.5923 14 6 1.9161 -0.9596 8.9644 15 1 2.8221 -0.8959 9.5486 16 6 0.7793 -0.2998 9.3811 17 7 -0.3239 -0.3770 8.6694 18 14 0.8066 0.7047 10.9558 19 1 1.8235 1.7806 10.8389 20 1 -0.5306 1.3102 11.1799 21 1 1.1490 -0.1778 12.1000 22 6 3.2292 -2.4472 7.3560 23 7 2.1291 -0.8573 3.5736 24 6 1.7018 -0.2428 2.4921 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4423 -0.0005 32 1 3.1099 -2.2160 0.1389 33 1 3.8922 -3.3429 2.2120 34 1 2.7822 -0.0610 6.6078 35 1 1.3087 -0.7637 5.8130 36 1 -0.0813 -2.2008 7.8056 37 1 -1.1236 0.0875 8.9624 38 1 3.2302 -3.5211 7.5427 39 1 4.0941 -1.9436 7.7880 40 1 1.0809 0.6356 2.5889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331983628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:57 Heat of formation + Delta-G solvation = -17.675054 kcal Electronic energy + Delta-G solvation = -22975.145686 eV Core-core repulsion = 19563.108845 eV Total energy + Delta-G solvation = -3412.036841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54302 -39.20512 -37.33406 -35.86406 -33.96256 -32.26695 -32.12198 -30.48005 -28.50019 -27.38179 -25.64149 -24.94711 -23.95289 -23.74020 -20.79798 -20.20426 -18.76002 -17.53637 -16.91435 -16.59805 -15.47920 -15.28636 -15.06074 -14.88361 -14.49543 -14.27381 -14.07934 -13.93157 -13.47893 -13.20872 -12.96069 -12.83795 -12.54521 -12.38402 -12.19387 -11.89276 -11.48490 -11.44384 -11.30198 -11.11499 -11.01026 -10.91814 -10.44670 -10.19447 -9.90212 -9.81317 -9.33851 -9.15289 -8.92206 -8.71865 -8.24456 -7.76705 -6.34091 -4.44083 0.79752 1.30793 3.13409 3.19716 3.25180 3.27400 3.50829 4.11055 4.22025 4.28194 4.53398 4.56844 4.84568 4.87051 4.92924 4.98029 5.10567 5.18807 5.39061 5.45037 5.57689 5.59739 5.64155 5.76450 5.79475 5.90244 5.97968 5.99456 6.11568 6.23941 6.24219 6.48017 6.60481 6.68759 6.75591 7.02208 7.19618 7.68789 7.87431 7.93838 8.49129 8.58493 8.77349 9.26478 9.56496 10.72649 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.004259 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.225065 B = 6573.082214 C = 7594.881703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C -0.146 4.146 4 C -0.118 4.118 5 C -0.085 4.085 6 C -0.115 4.115 7 C 0.091 3.909 8 C 0.584 3.416 9 O -0.562 6.562 10 N -0.610 5.610 11 C 0.087 3.913 12 C 0.236 3.764 13 O -0.572 6.572 14 C -0.533 4.533 15 H 0.071 0.929 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.908 3.092 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.105 3.895 23 N -0.439 5.439 24 C 0.101 3.899 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.394 0.606 37 H 0.274 0.726 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 3.896 -15.875 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 C -0.203 4.203 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.136 4.136 7 C -0.047 4.047 8 C 0.371 3.629 9 O -0.443 6.443 10 N -0.340 5.340 11 C -0.035 4.035 12 C 0.194 3.806 13 O -0.385 6.385 14 C -0.572 4.572 15 H 0.090 0.910 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.735 3.265 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.017 4.017 23 N -0.149 5.149 24 C -0.059 4.059 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.250 0.750 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.126 3.227 -15.394 15.872 hybrid contribution -0.224 0.728 -0.022 0.761 sum 1.903 3.955 -15.416 16.029 Atomic orbital electron populations 1.21882 0.93880 1.02307 1.02330 1.20089 0.96251 0.96093 0.94631 1.21878 1.01290 0.94846 1.02321 1.21087 0.97988 0.96371 0.96589 1.21445 0.96261 0.94639 0.98720 1.22095 0.99278 1.00545 0.91667 1.21273 0.96316 0.93309 0.93771 1.17343 0.80149 0.83718 0.81645 1.90710 1.40211 1.26800 1.86547 1.49548 1.49482 1.30630 1.04334 1.24218 0.93817 0.89487 0.96006 1.19633 0.83259 0.86455 0.91259 1.86032 1.19267 1.41067 1.92115 1.21384 0.98158 1.29828 1.07785 0.91035 1.25065 0.95005 0.95570 0.97326 1.69273 1.01931 1.43755 1.38788 0.86381 0.77412 0.80031 0.82634 1.19892 1.21010 1.19867 1.23419 0.99663 1.01040 0.77552 1.67847 1.07645 1.06791 1.32645 1.22683 0.97465 0.98809 0.86909 0.92013 0.92126 0.92413 0.90264 0.92123 0.92053 0.92493 0.84516 0.83664 0.90491 0.90286 0.75002 0.91592 0.91446 0.89486 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.01 37.16 0.33 -0.83 16 2 C -0.05 -0.43 3.11 -91.77 -0.28 -0.71 16 3 C -0.15 -1.11 9.01 37.16 0.33 -0.77 16 4 C -0.12 -1.36 4.80 -104.36 -0.50 -1.86 16 5 C -0.08 -1.00 9.79 -39.31 -0.39 -1.39 16 6 C -0.11 -1.74 9.63 -39.05 -0.38 -2.12 16 7 C 0.09 1.72 6.75 -83.01 -0.56 1.15 16 8 C 0.58 12.97 8.06 -12.19 -0.10 12.87 16 9 O -0.56 -13.39 17.10 5.35 0.09 -13.30 16 10 N -0.61 -13.94 3.69 -186.06 -0.69 -14.63 16 11 C 0.09 2.02 6.94 -8.38 -0.06 1.96 16 12 C 0.24 5.88 1.58 -91.13 -0.14 5.74 16 13 O -0.57 -15.33 13.55 -35.23 -0.48 -15.80 16 14 C -0.53 -13.64 8.70 -34.44 -0.30 -13.93 16 15 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 16 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 17 N -0.90 -23.15 11.01 55.43 0.61 -22.54 16 18 Si 0.91 19.62 29.54 -169.99 -5.02 14.60 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 C 0.11 2.40 8.02 -8.52 -0.07 2.33 16 23 N -0.44 -7.90 8.02 -9.80 -0.08 -7.98 16 24 C 0.10 1.42 9.90 -17.57 -0.17 1.24 16 25 H 0.06 0.51 7.41 -51.93 -0.38 0.13 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.57 7.92 -51.92 -0.41 0.15 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.48 7.41 -51.93 -0.38 0.10 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.14 1.16 8.00 -52.49 -0.42 0.74 16 33 H 0.15 2.09 7.64 -52.48 -0.40 1.69 16 34 H 0.08 1.72 8.10 -51.93 -0.42 1.30 16 35 H 0.08 1.89 7.14 -51.93 -0.37 1.52 16 36 H 0.39 10.62 6.32 45.56 0.29 10.90 16 37 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 38 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 40 H 0.16 1.85 7.12 -52.49 -0.37 1.47 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -29.75 336.91 -7.82 -37.56 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -4.96 Total: 11.58 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.38 Total: 5.43 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.15 Total: -45.14 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.39 Total: -29.11 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.75 -7.82 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331983628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.889 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds