Wall clock time and date at job start Tue Mar 31 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47262 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00364 * 2 1 3 5 5 C 1.38624 * 120.32731 * 120.27168 * 4 2 1 6 6 C 1.38592 * 118.48658 * 180.28609 * 5 4 2 7 7 C 1.39309 * 119.06042 * 359.72649 * 6 5 4 8 8 C 1.48165 * 119.72254 * 180.02562 * 7 6 5 9 9 O 1.21519 * 119.99987 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99972 * 179.97438 * 8 7 6 11 11 C 1.47064 * 136.05906 * 359.62047 * 10 8 7 12 12 C 1.53754 * 87.89078 * 152.96809 * 11 10 8 13 13 O 1.42901 * 114.39390 * 272.68112 * 12 11 10 14 14 C 1.50696 * 114.26936 * 139.79311 * 12 11 10 15 15 H 1.07994 * 120.00191 * 266.47770 * 14 12 11 16 16 C 1.37881 * 119.99831 * 86.47886 * 14 12 11 17 17 N 1.31516 * 119.99983 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 119.99982 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46646 * 59.99687 * 18 16 14 20 20 H 1.48490 * 109.46999 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46992 * 299.99929 * 18 16 14 22 22 C 1.47069 * 136.05665 * 179.97438 * 10 8 7 23 23 N 1.32717 * 120.55030 * 359.97438 * 7 6 5 24 24 C 1.31520 * 121.64619 * 0.02562 * 23 7 6 25 25 H 1.09003 * 109.46994 * 299.99830 * 1 2 3 26 26 H 1.09000 * 109.47507 * 59.99830 * 1 2 3 27 27 H 1.09002 * 109.47597 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46738 * 239.99518 * 2 1 3 29 29 H 1.09003 * 109.46634 * 299.99822 * 3 2 1 30 30 H 1.08995 * 109.47143 * 59.99851 * 3 2 1 31 31 H 1.08998 * 109.46613 * 180.02562 * 3 2 1 32 32 H 1.07999 * 120.75624 * 0.02562 * 5 4 2 33 33 H 1.08004 * 120.46874 * 179.71080 * 6 5 4 34 34 H 1.09003 * 113.47351 * 267.70118 * 11 10 8 35 35 H 1.09007 * 113.46577 * 38.14284 * 11 10 8 36 36 H 0.96697 * 114.00039 * 273.58183 * 13 12 11 37 37 H 0.97005 * 119.99494 * 180.02562 * 17 16 14 38 38 H 1.09003 * 113.47039 * 321.86053 * 22 10 8 39 39 H 1.09005 * 113.47146 * 92.24347 * 22 10 8 40 40 H 1.08002 * 119.54502 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8343 -1.8349 1.1111 6 6 3.2699 -2.4619 2.2677 7 6 2.8935 -1.9399 3.5032 8 6 3.3514 -2.5983 4.7491 9 8 4.0519 -3.5895 4.6905 10 7 2.9910 -2.0977 5.9474 11 6 2.1916 -0.9581 6.4220 12 6 1.8942 -1.7695 7.6937 13 8 0.7582 -2.6305 7.5923 14 6 1.9161 -0.9596 8.9644 15 1 2.8221 -0.8959 9.5486 16 6 0.7793 -0.2998 9.3811 17 7 -0.3239 -0.3770 8.6694 18 14 0.8066 0.7047 10.9558 19 1 1.8235 1.7806 10.8389 20 1 -0.5306 1.3102 11.1799 21 1 1.1490 -0.1778 12.1000 22 6 3.2292 -2.4472 7.3560 23 7 2.1291 -0.8573 3.5736 24 6 1.7018 -0.2428 2.4921 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4423 -0.0005 32 1 3.1099 -2.2160 0.1389 33 1 3.8922 -3.3429 2.2120 34 1 2.7822 -0.0610 6.6078 35 1 1.3087 -0.7637 5.8130 36 1 -0.0813 -2.2008 7.8056 37 1 -1.1236 0.0875 8.9624 38 1 3.2302 -3.5211 7.5427 39 1 4.0941 -1.9436 7.7880 40 1 1.0809 0.6356 2.5889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331983628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:57 Heat of formation + Delta-G solvation = -37.612742 kcal Electronic energy + Delta-G solvation = -22976.010249 eV Core-core repulsion = 19563.108845 eV Total energy + Delta-G solvation = -3412.901404 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.85175 -40.82625 -39.07058 -36.76846 -35.92328 -34.12314 -33.36993 -31.73324 -30.17067 -27.96388 -27.41904 -26.80083 -25.21313 -24.85558 -22.24160 -21.28219 -20.44844 -19.43631 -18.29428 -18.12845 -17.13759 -16.79435 -16.56940 -16.32571 -15.90481 -15.71346 -15.23888 -15.00846 -14.85661 -14.44188 -14.41504 -14.00538 -13.90957 -13.74856 -13.64302 -13.39849 -12.98200 -12.77813 -12.75034 -12.22072 -12.18024 -12.08619 -12.03396 -11.85232 -11.55018 -11.10284 -10.89953 -10.70375 -10.55013 -10.12878 -10.04438 -9.58443 -8.26191 -6.43878 -0.41355 0.23863 1.49392 1.50459 1.58652 1.65245 1.86654 2.41475 2.80781 2.93912 3.05169 3.55984 3.63626 3.74338 3.86615 3.91410 4.08151 4.16895 4.29517 4.32521 4.42534 4.55882 4.61248 4.72881 4.79692 4.83849 4.84451 4.86796 5.02213 5.03408 5.11854 5.16048 5.20103 5.24380 5.41003 5.49353 5.60673 5.73032 5.90730 6.61258 6.68079 6.75854 7.09222 7.29541 7.47785 8.80405 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.004259 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.225065 B = 6573.082214 C = 7594.881703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.146 4.146 4 C -0.096 4.096 5 C -0.075 4.075 6 C -0.112 4.112 7 C 0.051 3.949 8 C 0.576 3.424 9 O -0.589 6.589 10 N -0.618 5.618 11 C 0.107 3.893 12 C 0.217 3.783 13 O -0.587 6.587 14 C -0.555 4.555 15 H 0.076 0.924 16 C 0.032 3.968 17 N -0.918 5.918 18 Si 0.974 3.026 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.272 1.272 22 C 0.106 3.894 23 N -0.472 5.472 24 C 0.090 3.910 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.181 0.819 33 H 0.148 0.852 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.389 0.611 37 H 0.277 0.723 38 H 0.058 0.942 39 H 0.107 0.893 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 5.299 -17.970 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.203 4.203 4 C -0.098 4.098 5 C -0.100 4.100 6 C -0.133 4.133 7 C -0.086 4.086 8 C 0.366 3.634 9 O -0.471 6.471 10 N -0.348 5.348 11 C -0.016 4.016 12 C 0.176 3.824 13 O -0.400 6.400 14 C -0.593 4.593 15 H 0.095 0.905 16 C -0.168 4.168 17 N -0.559 5.559 18 Si 0.798 3.202 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.198 1.198 22 C -0.016 4.016 23 N -0.183 5.183 24 C -0.070 4.070 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.198 0.802 33 H 0.166 0.834 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.125 0.875 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.140 4.624 -17.500 18.227 hybrid contribution -0.271 0.310 0.486 0.637 sum 1.869 4.934 -17.014 17.813 Atomic orbital electron populations 1.21897 0.93444 1.02129 1.03000 1.20207 0.96452 0.96407 0.93552 1.21885 1.01144 0.94277 1.03013 1.21511 0.95816 0.95538 0.96955 1.21903 0.94947 0.93889 0.99256 1.22222 0.98994 1.00634 0.91498 1.20883 0.99469 0.95101 0.93130 1.18041 0.79465 0.83416 0.82491 1.90663 1.41406 1.27919 1.87124 1.49596 1.49932 1.30622 1.04646 1.23906 0.93380 0.89477 0.94790 1.19908 0.83288 0.87098 0.92133 1.86015 1.19691 1.41971 1.92280 1.21626 0.98806 1.30455 1.08367 0.90546 1.25814 0.94520 0.96365 1.00142 1.69346 1.02380 1.44132 1.40008 0.85365 0.77522 0.78552 0.78741 1.19159 1.20652 1.19766 1.23432 0.99443 1.00544 0.78221 1.67672 1.08457 1.07229 1.34959 1.23067 0.97594 0.99167 0.87201 0.92827 0.90094 0.93028 0.87827 0.90177 0.92739 0.92742 0.80150 0.83437 0.90038 0.91580 0.75526 0.91325 0.92371 0.87499 0.80981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.01 71.98 0.65 -1.21 16 2 C -0.05 -0.60 3.11 -11.54 -0.04 -0.64 16 3 C -0.15 -1.71 9.01 71.98 0.65 -1.06 16 4 C -0.10 -1.95 4.80 -19.70 -0.09 -2.04 16 5 C -0.07 -1.53 9.79 22.45 0.22 -1.31 16 6 C -0.11 -3.30 9.63 22.61 0.22 -3.09 16 7 C 0.05 1.93 6.75 41.91 0.28 2.21 16 8 C 0.58 26.47 8.06 86.88 0.70 27.17 16 9 O -0.59 -28.97 17.10 -3.77 -0.06 -29.03 16 10 N -0.62 -29.20 3.69 -861.34 -3.18 -32.38 16 11 C 0.11 5.11 6.94 83.26 0.58 5.69 16 12 C 0.22 11.12 1.58 -11.13 -0.02 11.10 16 13 O -0.59 -32.60 13.55 -148.98 -2.02 -34.61 16 14 C -0.55 -28.64 8.70 25.60 0.22 -28.42 16 15 H 0.08 3.77 7.81 -2.91 -0.02 3.74 16 16 C 0.03 1.61 5.39 84.66 0.46 2.07 16 17 N -0.92 -47.85 11.01 21.45 0.24 -47.62 16 18 Si 0.97 39.95 29.54 68.60 2.03 41.97 16 19 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 C 0.11 4.96 8.02 83.17 0.67 5.63 16 23 N -0.47 -17.20 8.02 -184.92 -1.48 -18.68 16 24 C 0.09 2.43 9.90 84.82 0.84 3.27 16 25 H 0.05 0.77 7.41 -2.39 -0.02 0.75 16 26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.92 7.92 -2.38 -0.02 0.90 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.72 7.41 -2.39 -0.02 0.70 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.18 2.13 8.00 -2.91 -0.02 2.11 16 33 H 0.15 4.17 7.64 -2.91 -0.02 4.15 16 34 H 0.08 3.73 8.10 -2.39 -0.02 3.71 16 35 H 0.07 3.28 7.14 -2.38 -0.02 3.27 16 36 H 0.39 21.77 6.32 -74.06 -0.47 21.30 16 37 H 0.28 13.60 8.31 -92.70 -0.77 12.83 16 38 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.11 4.49 8.10 -2.38 -0.02 4.47 16 40 H 0.17 3.90 7.12 -2.91 -0.02 3.88 16 Total: -1.00 -65.98 336.91 1.44 -64.54 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.59 Total: 36.45 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 5.33 Total: 19.37 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -4.42 Total: -98.68 kcal Atomic # 8 Polarization: -61.57 SS G_CDS: -2.08 Total: -63.65 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.97 kcal Total: -65.98 1.44 -64.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331983628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.930 kcal (2) G-P(sol) polarization free energy of solvation -65.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds