Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 O 1.42901 * 112.94758 * 53.40817 * 3 2 1 5 5 C 1.53945 * 113.74044 * 281.66951 * 3 2 1 6 6 N 1.47577 * 86.11499 * 222.04925 * 5 3 2 7 7 C 1.34776 * 134.48848 * 204.63612 * 6 5 3 8 8 O 1.21594 * 119.99767 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00296 * 0.02562 * 7 6 5 10 10 C 1.39954 * 120.00175 * 174.81822 * 9 7 6 11 11 C 1.39287 * 119.95252 * 146.37954 * 10 9 7 12 12 C 1.38488 * 120.43271 * 180.02562 * 11 10 9 13 13 C 1.37682 * 120.31930 * 359.97438 * 12 11 10 14 14 C 1.40741 * 119.88461 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.20792 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99783 * 151.78661 * 15 14 13 17 17 C 1.39931 * 120.00189 * 331.78569 * 15 14 13 18 18 N 1.30829 * 120.00226 * 348.99454 * 17 15 14 19 19 Si 1.86802 * 120.00104 * 168.98854 * 17 15 14 20 20 H 1.48497 * 109.47160 * 94.99145 * 19 17 15 21 21 H 1.48495 * 109.47137 * 214.99547 * 19 17 15 22 22 H 1.48501 * 109.47058 * 334.99468 * 19 17 15 23 23 C 1.38239 * 119.94407 * 326.10656 * 10 9 7 24 24 C 1.47580 * 91.01646 * 24.64238 * 6 5 3 25 25 H 1.09000 * 109.47545 * 299.99887 * 1 2 3 26 26 H 1.08996 * 109.47327 * 60.00446 * 1 2 3 27 27 H 1.09009 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46802 * 119.99744 * 2 1 3 29 29 H 1.09000 * 109.47093 * 239.99830 * 2 1 3 30 30 H 0.96697 * 113.99706 * 309.67040 * 4 3 2 31 31 H 1.08994 * 113.76936 * 336.35627 * 5 3 2 32 32 H 1.09003 * 113.76621 * 107.75108 * 5 3 2 33 33 H 0.97000 * 120.00074 * 354.81065 * 9 7 6 34 34 H 1.07996 * 119.77854 * 359.97438 * 11 10 9 35 35 H 1.07993 * 119.83644 * 179.97438 * 12 11 10 36 36 H 1.07999 * 120.05717 * 179.97438 * 13 12 11 37 37 H 0.96994 * 120.00310 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.16244 * 0.02562 * 23 10 9 39 39 H 1.08998 * 113.76803 * 221.05395 * 24 6 5 40 40 H 1.09006 * 113.86767 * 89.67200 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.4860 2.2293 1.0566 5 6 1.9778 2.1219 -1.3801 6 7 3.3099 2.6698 -1.0588 7 6 4.0083 3.7506 -1.4595 8 8 5.1199 3.9564 -1.0117 9 7 3.4746 4.6033 -2.3566 10 6 4.1521 5.7813 -2.6913 11 6 4.0639 6.2907 -3.9846 12 6 4.7306 7.4553 -4.3268 13 6 5.4882 8.1231 -3.3910 14 6 5.5866 7.6202 -2.0802 15 6 6.3633 8.3003 -1.1138 16 1 6.1089 8.2257 -0.0668 17 6 7.4614 9.0698 -1.5139 18 7 7.9016 8.9919 -2.7434 19 14 8.2988 10.2084 -0.2925 20 1 9.4593 9.5118 0.3183 21 1 8.7682 11.4293 -0.9955 22 1 7.3345 10.5892 0.7707 23 6 4.9032 6.4405 -1.7362 24 6 3.5701 1.5589 -0.1227 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 0.5222 2.1818 1.1185 31 1 1.9805 1.4213 -2.2151 32 1 1.1989 2.8801 -1.4618 33 1 2.6210 4.4004 -2.7703 34 1 3.4723 5.7736 -4.7256 35 1 4.6558 7.8415 -5.3326 36 1 6.0067 9.0307 -3.6626 37 1 8.6625 9.5255 -3.0209 38 1 4.9691 6.0485 -0.7320 39 1 4.0626 1.8677 0.7993 40 1 4.0408 0.6922 -0.5868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335157473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -17.239615 kcal Electronic energy + Delta-G solvation = -22638.976963 eV Core-core repulsion = 19226.959004 eV Total energy + Delta-G solvation = -3412.017959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.73424 -38.97360 -37.04361 -35.38280 -34.29478 -33.04552 -32.83673 -29.72623 -29.20523 -27.19766 -26.47503 -25.20625 -23.93003 -21.38718 -20.75917 -20.41068 -19.25892 -17.93519 -17.39514 -17.15348 -15.82632 -15.59725 -15.38376 -15.08993 -14.60843 -14.49881 -14.26192 -13.87606 -13.35547 -13.14185 -12.89749 -12.79306 -12.72386 -12.35269 -12.06029 -12.00439 -11.61847 -11.49326 -11.23866 -11.02948 -10.82746 -10.56847 -10.43050 -10.33054 -10.01063 -9.67035 -9.46522 -9.13947 -8.82926 -8.55405 -7.32866 -6.77610 -6.57881 -4.25929 2.62332 2.83850 3.01279 3.15460 3.21144 3.27783 3.60418 3.77746 4.01017 4.04991 4.22647 4.37222 4.61617 4.76618 4.83477 5.06453 5.14798 5.22324 5.25956 5.48921 5.52212 5.56010 5.64022 5.77202 5.80275 5.81313 6.30399 6.46206 6.88682 6.99262 7.12728 7.18903 7.33328 7.36134 7.49422 7.77428 7.91093 8.07883 8.19362 8.35540 8.49025 8.75808 8.99563 9.06424 9.14270 10.35274 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.003441 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.752379 B = 8134.035597 C = 8817.297942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.142 4.142 3 C 0.098 3.902 4 O -0.530 6.530 5 C 0.074 3.926 6 N -0.660 5.660 7 C 0.724 3.276 8 O -0.559 6.559 9 N -0.678 5.678 10 C 0.167 3.833 11 C -0.261 4.261 12 C -0.093 4.093 13 C -0.170 4.170 14 C 0.119 3.881 15 C -0.457 4.457 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.802 5.802 19 Si 0.911 3.089 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.207 4.207 24 C 0.141 3.859 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.377 0.623 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.392 0.608 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.278 0.722 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.427 -15.537 2.418 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.180 4.180 3 C 0.055 3.945 4 O -0.336 6.336 5 C -0.050 4.050 6 N -0.401 5.401 7 C 0.428 3.572 8 O -0.434 6.434 9 N -0.324 5.324 10 C 0.075 3.925 11 C -0.282 4.282 12 C -0.112 4.112 13 C -0.189 4.189 14 C 0.116 3.884 15 C -0.487 4.487 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.429 5.429 19 Si 0.736 3.264 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.229 4.229 24 C 0.018 3.982 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.226 0.774 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.225 0.775 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.646 -14.954 2.665 19.764 hybrid contribution -0.545 0.132 -0.026 0.562 sum -13.191 -14.821 2.639 20.016 Atomic orbital electron populations 1.21786 0.95172 1.02595 1.02048 1.22029 0.96797 0.95423 1.03744 1.22754 0.94844 0.89836 0.87036 1.86617 1.25810 1.69707 1.51461 1.23873 0.86205 0.97196 0.97725 1.48845 1.18701 1.24401 1.48147 1.15413 0.83248 0.78676 0.79892 1.91004 1.18203 1.74742 1.59454 1.42505 1.24052 1.21563 1.44230 1.17249 0.97043 0.84624 0.93556 1.20004 1.11949 1.02580 0.93698 1.20451 0.97801 0.95332 0.97664 1.21394 1.01724 1.01566 0.94260 1.17506 0.89117 0.88980 0.92751 1.19550 1.09606 1.24774 0.94796 0.90592 1.25876 0.96748 0.95878 0.95801 1.69809 1.21341 1.33942 1.17782 0.86260 0.79687 0.79553 0.80945 1.19645 1.20172 1.18541 1.21025 1.06604 0.96761 0.98481 1.23026 0.93434 0.88244 0.93527 0.92394 0.92223 0.91915 0.90428 0.90178 0.77383 0.89376 0.90021 0.77504 0.89438 0.89033 0.86071 0.91124 0.87473 0.89237 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.48 37.16 0.35 -0.31 16 2 C -0.14 -0.78 5.59 -26.73 -0.15 -0.93 16 3 C 0.10 0.86 1.49 -89.69 -0.13 0.73 16 4 O -0.53 -5.46 13.48 -35.23 -0.48 -5.93 16 5 C 0.07 0.71 7.75 -2.98 -0.02 0.69 16 6 N -0.66 -10.00 3.61 -184.04 -0.66 -10.66 16 7 C 0.72 15.07 8.49 -86.92 -0.74 14.34 16 8 O -0.56 -14.51 14.78 5.28 0.08 -14.43 16 9 N -0.68 -13.53 5.34 -14.27 -0.08 -13.61 16 10 C 0.17 4.07 6.26 -83.76 -0.52 3.54 16 11 C -0.26 -6.03 9.97 -39.10 -0.39 -6.42 16 12 C -0.09 -2.27 10.02 -39.69 -0.40 -2.67 16 13 C -0.17 -4.63 8.66 -38.84 -0.34 -4.96 16 14 C 0.12 3.44 5.55 -106.85 -0.59 2.85 16 15 C -0.46 -13.12 9.06 -37.74 -0.34 -13.46 16 16 H 0.08 2.13 7.87 -52.49 -0.41 1.72 16 17 C 0.07 1.96 5.25 -17.35 -0.09 1.87 16 18 N -0.80 -21.98 10.81 55.55 0.60 -21.38 16 19 Si 0.91 19.96 29.57 -169.99 -5.03 14.93 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 23 C -0.21 -5.73 8.39 -38.68 -0.32 -6.05 16 24 C 0.14 1.70 8.24 -2.98 -0.02 1.67 16 25 H 0.06 0.21 6.75 -51.93 -0.35 -0.14 16 26 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 27 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.37 8.04 -51.93 -0.42 -0.04 16 30 H 0.38 2.29 7.18 45.56 0.33 2.62 16 31 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.39 6.21 8.44 -40.82 -0.34 5.86 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.12 3.37 6.18 -52.49 -0.32 3.05 16 37 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 38 H 0.11 3.11 6.44 -52.49 -0.34 2.77 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -35.61 335.22 -9.02 -44.63 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -4.79 Total: 10.51 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -3.72 Total: -9.11 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.14 Total: -45.64 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.40 Total: -20.37 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.61 -9.02 -44.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335157473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.391 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds