Wall clock time and date at job start Tue Mar 31 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 O 1.42901 * 112.94758 * 53.40817 * 3 2 1 5 5 C 1.53945 * 113.74044 * 281.66951 * 3 2 1 6 6 N 1.47577 * 86.11499 * 222.04925 * 5 3 2 7 7 C 1.34776 * 134.48848 * 204.63612 * 6 5 3 8 8 O 1.21594 * 119.99767 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00296 * 0.02562 * 7 6 5 10 10 C 1.39954 * 120.00175 * 174.81822 * 9 7 6 11 11 C 1.39287 * 119.95252 * 146.37954 * 10 9 7 12 12 C 1.38488 * 120.43271 * 180.02562 * 11 10 9 13 13 C 1.37682 * 120.31930 * 359.97438 * 12 11 10 14 14 C 1.40741 * 119.88461 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.20792 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99783 * 151.78661 * 15 14 13 17 17 C 1.39931 * 120.00189 * 331.78569 * 15 14 13 18 18 N 1.30829 * 120.00226 * 348.99454 * 17 15 14 19 19 Si 1.86802 * 120.00104 * 168.98854 * 17 15 14 20 20 H 1.48497 * 109.47160 * 94.99145 * 19 17 15 21 21 H 1.48495 * 109.47137 * 214.99547 * 19 17 15 22 22 H 1.48501 * 109.47058 * 334.99468 * 19 17 15 23 23 C 1.38239 * 119.94407 * 326.10656 * 10 9 7 24 24 C 1.47580 * 91.01646 * 24.64238 * 6 5 3 25 25 H 1.09000 * 109.47545 * 299.99887 * 1 2 3 26 26 H 1.08996 * 109.47327 * 60.00446 * 1 2 3 27 27 H 1.09009 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46802 * 119.99744 * 2 1 3 29 29 H 1.09000 * 109.47093 * 239.99830 * 2 1 3 30 30 H 0.96697 * 113.99706 * 309.67040 * 4 3 2 31 31 H 1.08994 * 113.76936 * 336.35627 * 5 3 2 32 32 H 1.09003 * 113.76621 * 107.75108 * 5 3 2 33 33 H 0.97000 * 120.00074 * 354.81065 * 9 7 6 34 34 H 1.07996 * 119.77854 * 359.97438 * 11 10 9 35 35 H 1.07993 * 119.83644 * 179.97438 * 12 11 10 36 36 H 1.07999 * 120.05717 * 179.97438 * 13 12 11 37 37 H 0.96994 * 120.00310 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.16244 * 0.02562 * 23 10 9 39 39 H 1.08998 * 113.76803 * 221.05395 * 24 6 5 40 40 H 1.09006 * 113.86767 * 89.67200 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.4860 2.2293 1.0566 5 6 1.9778 2.1219 -1.3801 6 7 3.3099 2.6698 -1.0588 7 6 4.0083 3.7506 -1.4595 8 8 5.1199 3.9564 -1.0117 9 7 3.4746 4.6033 -2.3566 10 6 4.1521 5.7813 -2.6913 11 6 4.0639 6.2907 -3.9846 12 6 4.7306 7.4553 -4.3268 13 6 5.4882 8.1231 -3.3910 14 6 5.5866 7.6202 -2.0802 15 6 6.3633 8.3003 -1.1138 16 1 6.1089 8.2257 -0.0668 17 6 7.4614 9.0698 -1.5139 18 7 7.9016 8.9919 -2.7434 19 14 8.2988 10.2084 -0.2925 20 1 9.4593 9.5118 0.3183 21 1 8.7682 11.4293 -0.9955 22 1 7.3345 10.5892 0.7707 23 6 4.9032 6.4405 -1.7362 24 6 3.5701 1.5589 -0.1227 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 0.5222 2.1818 1.1185 31 1 1.9805 1.4213 -2.2151 32 1 1.1989 2.8801 -1.4618 33 1 2.6210 4.4004 -2.7703 34 1 3.4723 5.7736 -4.7256 35 1 4.6558 7.8415 -5.3326 36 1 6.0067 9.0307 -3.6626 37 1 8.6625 9.5255 -3.0209 38 1 4.9691 6.0485 -0.7320 39 1 4.0626 1.8677 0.7993 40 1 4.0408 0.6922 -0.5868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335157473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:08 Heat of formation + Delta-G solvation = -43.783835 kcal Electronic energy + Delta-G solvation = -22640.128006 eV Core-core repulsion = 19226.959004 eV Total energy + Delta-G solvation = -3413.169003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.89048 -40.43232 -38.85112 -36.39803 -36.17413 -34.81433 -33.52185 -31.75875 -30.69287 -28.64218 -27.37507 -27.24504 -24.72371 -23.08038 -22.64473 -21.39295 -20.69120 -19.63290 -18.93224 -17.95003 -17.50848 -17.09137 -16.78071 -16.44928 -16.24291 -15.67537 -15.45243 -15.24208 -14.81411 -14.57230 -14.17131 -14.04483 -13.95247 -13.58998 -13.27814 -13.14477 -13.03163 -12.84875 -12.58994 -12.53466 -12.22244 -12.07028 -11.87532 -11.64831 -11.57227 -11.32243 -11.12972 -10.88471 -10.69190 -9.79717 -9.37661 -8.69292 -8.57845 -6.39893 0.90704 0.99479 1.34377 1.39076 1.47116 1.50806 2.12869 2.21647 2.74965 2.77772 3.02495 3.28296 3.71833 3.74026 4.02131 4.31653 4.43782 4.44701 4.45596 4.49532 4.60277 4.61191 4.73316 4.77106 4.95029 5.03559 5.09117 5.11368 5.18795 5.21586 5.27544 5.32844 5.47730 5.75214 5.82877 6.05163 6.10699 6.21660 6.38713 6.68027 6.79433 6.92269 6.94929 7.00475 7.54471 8.36771 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.003441 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.752379 B = 8134.035597 C = 8817.297942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C 0.114 3.886 4 O -0.558 6.558 5 C 0.076 3.924 6 N -0.663 5.663 7 C 0.714 3.286 8 O -0.625 6.625 9 N -0.666 5.666 10 C 0.173 3.827 11 C -0.247 4.247 12 C -0.089 4.089 13 C -0.194 4.194 14 C 0.089 3.911 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.032 3.968 18 N -0.831 5.831 19 Si 0.987 3.013 20 H -0.267 1.267 21 H -0.256 1.256 22 H -0.261 1.261 23 C -0.237 4.237 24 C 0.123 3.877 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.395 0.605 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.415 0.585 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.288 0.712 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.535 -17.139 1.043 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.072 3.928 4 O -0.367 6.367 5 C -0.046 4.046 6 N -0.403 5.403 7 C 0.417 3.583 8 O -0.505 6.505 9 N -0.314 5.314 10 C 0.079 3.921 11 C -0.268 4.268 12 C -0.108 4.108 13 C -0.214 4.214 14 C 0.086 3.914 15 C -0.534 4.534 16 H 0.080 0.920 17 C -0.181 4.181 18 N -0.458 5.458 19 Si 0.807 3.193 20 H -0.192 1.192 21 H -0.180 1.180 22 H -0.185 1.185 23 C -0.259 4.259 24 C 0.001 3.999 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.247 0.753 31 H 0.142 0.858 32 H 0.111 0.889 33 H 0.252 0.748 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.866 -16.633 1.276 22.345 hybrid contribution -0.029 0.442 0.380 0.584 sum -14.895 -16.191 1.655 22.062 Atomic orbital electron populations 1.21803 0.93825 1.03355 1.02584 1.21971 0.97790 0.92428 1.04673 1.22618 0.92216 0.91776 0.86216 1.86576 1.27680 1.70422 1.52045 1.24319 0.83174 0.97696 0.99383 1.49015 1.20418 1.23234 1.47615 1.15730 0.82951 0.79990 0.79615 1.90956 1.21404 1.76673 1.61501 1.42237 1.24628 1.20141 1.44345 1.17347 0.95942 0.85401 0.93408 1.20443 1.10865 1.01813 0.93679 1.20857 0.96196 0.95156 0.98592 1.21369 1.03445 1.02067 0.94482 1.17845 0.89917 0.89722 0.93905 1.19752 1.11698 1.27533 0.94379 0.92007 1.26747 0.96631 0.96760 0.97997 1.69849 1.21944 1.34595 1.19383 0.85139 0.78249 0.77633 0.78277 1.19171 1.17992 1.18471 1.20928 1.09117 0.97583 0.98237 1.23480 0.96400 0.87883 0.92149 0.92151 0.91498 0.91052 0.90347 0.88499 0.75264 0.85763 0.88892 0.74810 0.84841 0.85403 0.87335 0.90131 0.90516 0.92161 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.48 71.98 0.68 -0.04 16 2 C -0.13 -0.98 5.59 30.60 0.17 -0.80 16 3 C 0.11 1.75 1.49 -10.13 -0.02 1.74 16 4 O -0.56 -10.72 13.48 -148.98 -2.01 -12.73 16 5 C 0.08 1.21 7.75 86.48 0.67 1.88 16 6 N -0.66 -19.58 3.61 -858.26 -3.10 -22.67 16 7 C 0.71 30.25 8.49 179.05 1.52 31.77 16 8 O -0.63 -34.40 14.78 -4.01 -0.06 -34.45 16 9 N -0.67 -26.14 5.34 -317.32 -1.69 -27.83 16 10 C 0.17 8.44 6.26 38.10 0.24 8.68 16 11 C -0.25 -10.87 9.97 22.58 0.23 -10.64 16 12 C -0.09 -4.22 10.02 22.20 0.22 -4.00 16 13 C -0.19 -10.86 8.66 22.75 0.20 -10.66 16 14 C 0.09 5.41 5.55 -21.31 -0.12 5.29 16 15 C -0.50 -30.82 9.06 23.46 0.21 -30.61 16 16 H 0.06 3.77 7.87 -2.91 -0.02 3.75 16 17 C 0.03 1.77 5.25 85.25 0.45 2.22 16 18 N -0.83 -46.88 10.81 21.82 0.24 -46.64 16 19 Si 0.99 42.16 29.57 68.60 2.03 44.19 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 C -0.24 -13.84 8.39 22.85 0.19 -13.65 16 24 C 0.12 2.88 8.24 86.48 0.71 3.59 16 25 H 0.06 0.25 6.75 -2.39 -0.02 0.24 16 26 H 0.07 0.23 8.09 -2.39 -0.02 0.21 16 27 H 0.07 0.25 8.14 -2.38 -0.02 0.24 16 28 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.10 0.45 8.04 -2.39 -0.02 0.44 16 30 H 0.40 3.98 7.18 -74.06 -0.53 3.45 16 31 H 0.12 1.19 8.03 -2.39 -0.02 1.17 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.41 12.07 8.44 -92.71 -0.78 11.29 16 34 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 35 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 36 H 0.11 6.26 6.18 -2.91 -0.02 6.24 16 37 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 38 H 0.08 4.86 6.44 -2.91 -0.02 4.84 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.12 2.12 8.10 -2.38 -0.02 2.10 16 Total: -1.00 -84.84 335.22 0.52 -84.32 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -0.24 Total: 31.05 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 5.36 Total: -15.23 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -4.55 Total: -97.15 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -2.07 Total: -47.19 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -84.84 0.52 -84.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335157473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.535 kcal (2) G-P(sol) polarization free energy of solvation -84.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds