Wall clock time and date at job start Tue Mar 31 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38359 * 119.85271 * 59.72434 * 4 2 1 6 6 C 1.37963 * 120.14445 * 179.72287 * 5 4 2 7 7 C 1.39579 * 119.85066 * 0.54687 * 6 5 4 8 8 C 1.47846 * 120.14109 * 179.70273 * 7 6 5 9 9 O 1.21553 * 119.99912 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00339 * 0.02562 * 8 7 6 11 11 C 1.46501 * 120.00153 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.46924 * 180.02562 * 11 10 8 13 13 O 1.21293 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99741 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99950 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99996 * 0.02562 * 15 14 12 17 17 C 1.38956 * 120.00005 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99915 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47498 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47372 * 120.00188 * 19 17 15 22 22 H 1.48505 * 109.46824 * 239.99789 * 19 17 15 23 23 C 1.39568 * 119.71026 * 359.72786 * 7 6 5 24 24 C 1.37963 * 119.85740 * 359.97438 * 23 7 6 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08003 * 119.92630 * 0.02562 * 5 4 2 33 33 H 1.08001 * 120.07046 * 180.24913 * 6 5 4 34 34 H 0.97004 * 119.99463 * 0.02562 * 10 8 7 35 35 H 1.09006 * 109.46711 * 300.00325 * 11 10 8 36 36 H 1.08998 * 109.46835 * 60.00095 * 11 10 8 37 37 H 0.96999 * 120.00060 * 0.02562 * 14 12 11 38 38 H 0.96997 * 119.99734 * 179.97438 * 18 17 15 39 39 H 1.08009 * 120.07341 * 179.97438 * 23 7 6 40 40 H 1.07992 * 119.93128 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6915 -0.2384 -2.4856 6 6 2.1527 -0.8807 -3.6161 7 6 2.9554 -2.0157 -3.4916 8 6 3.4478 -2.7129 -4.6988 9 8 4.1463 -3.7014 -4.5873 10 7 3.1222 -2.2524 -5.9229 11 6 3.6105 -2.9430 -7.1191 12 6 3.1086 -2.2322 -8.3495 13 8 2.4120 -1.2455 -8.2382 14 7 3.4348 -2.6922 -9.5736 15 6 2.9778 -2.0459 -10.6930 16 1 2.3568 -1.1679 -10.5938 17 6 3.3136 -2.5205 -11.9550 18 7 4.0696 -3.5885 -12.0756 19 14 2.6915 -1.6394 -13.4802 20 1 1.8662 -0.4729 -13.0760 21 1 3.8467 -1.1729 -14.2883 22 1 1.8663 -2.5725 -14.2889 23 6 3.2908 -2.4899 -2.2225 24 6 2.8280 -1.8347 -1.1000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.0670 0.6377 -2.5805 33 1 1.8892 -0.5088 -4.5953 34 1 2.5650 -1.4633 -6.0118 35 1 4.7006 -2.9429 -7.1190 36 1 3.2472 -3.9706 -7.1191 37 1 3.9922 -3.4810 -9.6626 38 1 4.3037 -3.9200 -12.9566 39 1 3.9112 -3.3680 -2.1193 40 1 3.0865 -2.2008 -0.1175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343546457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:26 Heat of formation + Delta-G solvation = -67.272259 kcal Electronic energy + Delta-G solvation = -21728.789259 eV Core-core repulsion = 18314.601722 eV Total energy + Delta-G solvation = -3414.187537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27549 -38.97711 -38.03150 -35.46700 -34.52115 -33.73837 -31.44005 -31.13700 -30.31504 -27.63038 -27.46141 -24.85382 -23.73907 -22.84558 -20.89391 -19.89976 -19.65269 -18.32771 -17.76647 -16.45364 -15.63628 -15.56166 -15.28440 -15.04729 -14.89192 -14.41257 -14.15444 -14.03035 -13.91258 -13.70330 -13.63297 -13.28403 -12.79717 -12.67846 -12.31562 -12.22083 -11.90275 -11.65280 -11.54983 -11.44275 -11.15442 -11.11517 -10.88934 -10.42080 -10.34046 -9.82576 -9.66492 -9.11581 -8.98451 -8.71330 -8.65798 -8.11967 -6.53078 -3.95091 0.77182 1.25485 2.91430 3.09244 3.21123 3.26520 3.35318 3.71022 3.83084 4.10081 4.32530 4.46886 4.77283 4.81555 4.86274 4.86834 4.94367 5.11269 5.15542 5.22939 5.30497 5.32830 5.50974 5.54838 5.61633 5.74103 5.86276 5.89496 5.89863 5.90970 5.94214 6.04857 6.20538 6.29188 6.40362 6.62638 6.76220 7.44810 7.77580 7.90425 8.38886 8.44215 9.02943 9.37412 9.85035 10.63866 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030431 B = 0.002646 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.883085 B =10579.476842 C =11308.300752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.057 4.057 5 C -0.123 4.123 6 C -0.081 4.081 7 C -0.133 4.133 8 C 0.554 3.446 9 O -0.547 6.547 10 N -0.702 5.702 11 C 0.108 3.892 12 C 0.428 3.572 13 O -0.598 6.598 14 N -0.548 5.548 15 C -0.305 4.305 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.894 5.894 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.058 4.058 24 C -0.129 4.129 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.410 0.590 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.136 0.864 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 5.349 21.921 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.203 4.203 4 C -0.057 4.057 5 C -0.141 4.141 6 C -0.099 4.099 7 C -0.136 4.136 8 C 0.341 3.659 9 O -0.427 6.427 10 N -0.356 5.356 11 C -0.019 4.019 12 C 0.214 3.786 13 O -0.485 6.485 14 N -0.183 5.183 15 C -0.434 4.434 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.534 5.534 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.077 4.077 24 C -0.147 4.147 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.249 0.751 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.154 0.846 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.690 5.204 21.824 22.737 hybrid contribution -0.131 0.185 -1.058 1.082 sum -3.821 5.390 20.766 21.792 Atomic orbital electron populations 1.21870 0.94087 1.02201 1.02105 1.20189 0.96159 0.96191 0.95260 1.21868 1.01370 0.94916 1.02104 1.20079 0.95919 0.94904 0.94786 1.20915 1.01038 1.00605 0.91543 1.21445 0.95172 0.93913 0.99407 1.19960 1.02062 0.97771 0.93763 1.18250 0.80399 0.84057 0.83163 1.90748 1.38584 1.26369 1.86956 1.45640 1.53062 1.32359 1.04532 1.20985 1.00036 0.96648 0.84257 1.19724 0.86669 0.87712 0.84535 1.90490 1.43159 1.28769 1.86056 1.41802 1.44951 1.27393 1.04167 1.19782 1.29622 1.11093 0.82905 0.87601 1.25339 0.96570 0.96372 0.99481 1.69622 1.35905 1.22567 1.25326 0.85751 0.78543 0.79252 0.80505 1.19122 1.20594 1.20599 1.21254 0.96871 0.98824 0.90728 1.21016 0.99151 0.95964 0.98580 0.92411 0.92315 0.92220 0.90321 0.92310 0.92411 0.92230 0.85501 0.85085 0.75051 0.89656 0.89647 0.77002 0.91612 0.84649 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.00 37.16 0.33 -0.60 16 2 C -0.06 -0.42 3.09 -91.77 -0.28 -0.70 16 3 C -0.15 -0.94 9.01 37.16 0.33 -0.60 16 4 C -0.06 -0.53 4.79 -104.53 -0.50 -1.03 16 5 C -0.12 -1.24 8.69 -39.64 -0.34 -1.58 16 6 C -0.08 -0.97 9.54 -39.18 -0.37 -1.34 16 7 C -0.13 -1.84 5.87 -104.97 -0.62 -2.45 16 8 C 0.55 9.36 7.77 -12.33 -0.10 9.27 16 9 O -0.55 -10.67 16.35 5.32 0.09 -10.58 16 10 N -0.70 -12.15 5.48 -62.43 -0.34 -12.49 16 11 C 0.11 2.03 6.15 -5.20 -0.03 2.00 16 12 C 0.43 9.85 7.85 -10.99 -0.09 9.76 16 13 O -0.60 -15.26 15.24 5.55 0.08 -15.17 16 14 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 15 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 16 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.89 -23.87 13.05 55.50 0.72 -23.14 16 19 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 23 C -0.06 -0.71 9.60 -39.19 -0.38 -1.08 16 24 C -0.13 -1.28 9.65 -39.64 -0.38 -1.66 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 28 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 32 H 0.13 1.04 7.08 -52.48 -0.37 0.67 16 33 H 0.13 1.51 6.41 -52.49 -0.34 1.17 16 34 H 0.41 6.89 5.47 -40.82 -0.22 6.66 16 35 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.14 1.64 7.65 -52.48 -0.40 1.24 16 40 H 0.13 0.95 7.94 -52.49 -0.42 0.53 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -31.16 341.85 -7.33 -38.49 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.29 Total: 13.84 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.66 Total: 2.11 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.32 Total: -49.31 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: 0.17 Total: -25.76 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.16 -7.33 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343546457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.781 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds