Wall clock time and date at job start Tue Mar 31 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38359 * 119.85271 * 59.72434 * 4 2 1 6 6 C 1.37963 * 120.14445 * 179.72287 * 5 4 2 7 7 C 1.39579 * 119.85066 * 0.54687 * 6 5 4 8 8 C 1.47846 * 120.14109 * 179.70273 * 7 6 5 9 9 O 1.21553 * 119.99912 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00339 * 0.02562 * 8 7 6 11 11 C 1.46501 * 120.00153 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.46924 * 180.02562 * 11 10 8 13 13 O 1.21293 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99741 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99950 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99996 * 0.02562 * 15 14 12 17 17 C 1.38956 * 120.00005 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99915 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47498 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47372 * 120.00188 * 19 17 15 22 22 H 1.48505 * 109.46824 * 239.99789 * 19 17 15 23 23 C 1.39568 * 119.71026 * 359.72786 * 7 6 5 24 24 C 1.37963 * 119.85740 * 359.97438 * 23 7 6 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08003 * 119.92630 * 0.02562 * 5 4 2 33 33 H 1.08001 * 120.07046 * 180.24913 * 6 5 4 34 34 H 0.97004 * 119.99463 * 0.02562 * 10 8 7 35 35 H 1.09006 * 109.46711 * 300.00325 * 11 10 8 36 36 H 1.08998 * 109.46835 * 60.00095 * 11 10 8 37 37 H 0.96999 * 120.00060 * 0.02562 * 14 12 11 38 38 H 0.96997 * 119.99734 * 179.97438 * 18 17 15 39 39 H 1.08009 * 120.07341 * 179.97438 * 23 7 6 40 40 H 1.07992 * 119.93128 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6915 -0.2384 -2.4856 6 6 2.1527 -0.8807 -3.6161 7 6 2.9554 -2.0157 -3.4916 8 6 3.4478 -2.7129 -4.6988 9 8 4.1463 -3.7014 -4.5873 10 7 3.1222 -2.2524 -5.9229 11 6 3.6105 -2.9430 -7.1191 12 6 3.1086 -2.2322 -8.3495 13 8 2.4120 -1.2455 -8.2382 14 7 3.4348 -2.6922 -9.5736 15 6 2.9778 -2.0459 -10.6930 16 1 2.3568 -1.1679 -10.5938 17 6 3.3136 -2.5205 -11.9550 18 7 4.0696 -3.5885 -12.0756 19 14 2.6915 -1.6394 -13.4802 20 1 1.8662 -0.4729 -13.0760 21 1 3.8467 -1.1729 -14.2883 22 1 1.8663 -2.5725 -14.2889 23 6 3.2908 -2.4899 -2.2225 24 6 2.8280 -1.8347 -1.1000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.0670 0.6377 -2.5805 33 1 1.8892 -0.5088 -4.5953 34 1 2.5650 -1.4633 -6.0118 35 1 4.7006 -2.9429 -7.1190 36 1 3.2472 -3.9706 -7.1191 37 1 3.9922 -3.4810 -9.6626 38 1 4.3037 -3.9200 -12.9566 39 1 3.9112 -3.3680 -2.1193 40 1 3.0865 -2.2008 -0.1175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343546457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:25 Heat of formation + Delta-G solvation = -87.183997 kcal Electronic energy + Delta-G solvation = -21729.652697 eV Core-core repulsion = 18314.601722 eV Total energy + Delta-G solvation = -3415.050975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43681 -40.34577 -39.56656 -36.30544 -36.19555 -35.41117 -33.40900 -32.06901 -31.25197 -29.15389 -27.93748 -26.60408 -24.83949 -23.71637 -21.94093 -21.43352 -20.78495 -20.14696 -19.23944 -17.67033 -17.18401 -16.80084 -16.78821 -16.38193 -16.03089 -15.79440 -15.54566 -15.52264 -14.92844 -14.66460 -14.43749 -14.26459 -13.94568 -13.71680 -13.65872 -13.56965 -13.24894 -12.93334 -12.84780 -12.46414 -12.28299 -12.11836 -11.99378 -11.79551 -11.59991 -11.51541 -11.15827 -10.59837 -10.33729 -10.11668 -9.97299 -9.70530 -8.52944 -6.03306 -0.19173 0.39844 1.33885 1.42242 1.56372 1.75693 1.88263 1.94949 2.30096 2.83780 3.07302 3.14158 3.56590 3.77016 3.81534 3.99011 4.14623 4.20657 4.34388 4.37710 4.38035 4.41295 4.51390 4.53210 4.85971 4.86653 4.96531 5.04150 5.06155 5.16194 5.17090 5.31992 5.36816 5.37575 5.41274 5.43238 5.65933 5.89457 5.92004 6.40116 6.46933 7.00948 7.04604 7.41161 7.91089 8.64222 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030431 B = 0.002646 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.883085 B =10579.476842 C =11308.300752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.048 4.048 5 C -0.123 4.123 6 C -0.086 4.086 7 C -0.158 4.158 8 C 0.555 3.445 9 O -0.579 6.579 10 N -0.703 5.703 11 C 0.120 3.880 12 C 0.433 3.567 13 O -0.623 6.623 14 N -0.558 5.558 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.066 4.066 24 C -0.126 4.126 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.413 0.587 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.131 0.869 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 6.274 23.376 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 C -0.203 4.203 4 C -0.048 4.048 5 C -0.141 4.141 6 C -0.105 4.105 7 C -0.161 4.161 8 C 0.345 3.655 9 O -0.461 6.461 10 N -0.357 5.357 11 C -0.008 4.008 12 C 0.220 3.780 13 O -0.512 6.512 14 N -0.193 5.193 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.085 4.085 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.165 0.835 33 H 0.148 0.852 34 H 0.252 0.748 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.148 0.852 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.344 6.126 23.296 24.476 hybrid contribution 0.050 -0.069 -1.376 1.379 sum -4.294 6.056 21.920 23.143 Atomic orbital electron populations 1.21876 0.93482 1.02109 1.02790 1.20262 0.96552 0.96385 0.94389 1.21874 1.01072 0.94519 1.02787 1.20451 0.94491 0.94290 0.95559 1.21168 1.00796 1.00929 0.91215 1.21497 0.95152 0.93609 1.00238 1.19815 1.04276 0.99078 0.92899 1.18730 0.79562 0.83622 0.83613 1.90718 1.40127 1.27840 1.87366 1.45646 1.53282 1.32439 1.04352 1.20826 1.00508 0.96587 0.82872 1.20352 0.85398 0.87105 0.85175 1.90466 1.44077 1.29961 1.86661 1.41847 1.45455 1.27645 1.04402 1.19782 1.30928 1.11517 0.84357 0.89512 1.26158 0.96314 0.96908 1.01813 1.69687 1.36228 1.23296 1.26383 0.84794 0.78207 0.78087 0.76787 1.19369 1.19600 1.19604 1.21342 0.97201 0.99074 0.90918 1.21312 0.98396 0.95666 0.98957 0.92897 0.90855 0.92410 0.88943 0.90848 0.92901 0.92428 0.83502 0.85218 0.74760 0.88598 0.88586 0.76668 0.91027 0.85151 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.00 71.98 0.65 -0.81 16 2 C -0.06 -0.63 3.09 -11.54 -0.04 -0.67 16 3 C -0.15 -1.46 9.01 71.98 0.65 -0.81 16 4 C -0.05 -0.78 4.79 -19.81 -0.09 -0.87 16 5 C -0.12 -2.27 8.69 22.23 0.19 -2.08 16 6 C -0.09 -2.03 9.54 22.53 0.21 -1.82 16 7 C -0.16 -4.38 5.87 -20.09 -0.12 -4.50 16 8 C 0.56 19.07 7.77 86.79 0.67 19.74 16 9 O -0.58 -22.97 16.35 -3.88 -0.06 -23.03 16 10 N -0.70 -24.68 5.48 -469.70 -2.57 -27.26 16 11 C 0.12 4.53 6.15 85.63 0.53 5.06 16 12 C 0.43 20.26 7.85 87.66 0.69 20.95 16 13 O -0.62 -32.45 15.24 -3.07 -0.05 -32.49 16 14 N -0.56 -28.28 5.29 -306.98 -1.62 -29.90 16 15 C -0.34 -18.61 9.68 84.04 0.81 -17.79 16 16 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 17 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 18 N -0.92 -48.81 13.05 21.67 0.28 -48.52 16 19 Si 1.00 41.77 29.55 68.60 2.03 43.80 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 C -0.07 -1.59 9.60 22.53 0.22 -1.37 16 24 C -0.13 -2.22 9.65 22.23 0.21 -2.01 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.60 7.36 -2.39 -0.02 0.59 16 28 H 0.09 0.81 7.87 -2.39 -0.02 0.79 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.60 7.39 -2.39 -0.02 0.59 16 32 H 0.15 2.08 7.08 -2.91 -0.02 2.06 16 33 H 0.13 3.00 6.41 -2.91 -0.02 2.99 16 34 H 0.41 14.12 5.47 -92.71 -0.51 13.61 16 35 H 0.10 3.46 8.14 -2.38 -0.02 3.44 16 36 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 38 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.13 3.18 7.65 -2.91 -0.02 3.16 16 40 H 0.15 1.84 7.94 -2.91 -0.02 1.81 16 Total: -1.00 -66.81 341.85 2.90 -63.91 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -0.17 Total: 40.58 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 5.06 Total: 12.90 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -3.91 Total: -105.68 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -0.11 Total: -55.52 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -66.81 2.90 -63.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343546457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.270 kcal (2) G-P(sol) polarization free energy of solvation -66.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds