Wall clock time and date at job start Tue Mar 31 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32559 * 120.00477 * 2 1 4 4 C 1.47813 * 120.00102 * 352.93649 * 3 2 1 5 5 C 1.39555 * 120.14095 * 322.82582 * 4 3 2 6 6 C 1.37950 * 119.86066 * 179.97438 * 5 4 3 7 7 C 1.38363 * 120.14185 * 359.97438 * 6 5 4 8 8 C 1.38325 * 120.28172 * 359.72330 * 7 6 5 9 9 N 1.48011 * 119.92888 * 180.28212 * 8 7 6 10 10 O 1.21798 * 119.99903 * 180.27832 * 9 8 7 11 11 O 1.21798 * 119.99707 * 0.26952 * 9 8 7 12 12 C 1.37996 * 120.14567 * 0.55644 * 8 7 6 13 13 C 1.50700 * 119.99606 * 179.97438 * 2 1 3 14 14 N 1.46903 * 109.47344 * 274.99952 * 13 2 1 15 15 C 1.46898 * 110.99965 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.46823 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47310 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99259 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00233 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00075 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00087 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47350 * 59.99568 * 21 19 17 23 23 H 1.48492 * 109.47527 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47057 * 299.99838 * 21 19 17 25 25 H 1.09006 * 109.47306 * 87.07688 * 1 2 3 26 26 H 1.08999 * 109.47787 * 207.08242 * 1 2 3 27 27 H 1.09006 * 109.46788 * 327.08301 * 1 2 3 28 28 H 1.07999 * 120.00480 * 172.93284 * 3 2 1 29 29 H 1.08010 * 120.07110 * 359.97438 * 5 4 3 30 30 H 1.08006 * 119.92958 * 180.02562 * 6 5 4 31 31 H 1.07992 * 119.86148 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.07241 * 179.72316 * 12 8 7 33 33 H 1.08996 * 109.47273 * 35.00007 * 13 2 1 34 34 H 1.09000 * 109.47252 * 154.99799 * 13 2 1 35 35 H 1.00904 * 110.99497 * 56.04401 * 14 13 2 36 36 H 1.09004 * 109.47230 * 299.99967 * 15 14 13 37 37 H 1.08994 * 109.47365 * 60.00144 * 15 14 13 38 38 H 1.08996 * 109.47387 * 299.99714 * 16 15 14 39 39 H 1.09007 * 109.47293 * 59.99907 * 16 15 14 40 40 H 0.96996 * 119.99910 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1479 0.0000 4 6 1.4393 2.4233 -0.1574 5 6 0.3410 2.5005 -1.0149 6 6 -0.3369 3.6935 -1.1570 7 6 0.0697 4.8120 -0.4512 8 6 1.1537 4.7405 0.4050 9 7 1.5781 5.9402 1.1609 10 8 2.5355 5.8800 1.9113 11 8 0.9699 6.9876 1.0323 12 6 1.8439 3.5545 0.5518 13 6 2.2604 -1.3051 0.0006 14 7 2.4007 -1.7890 1.3805 15 6 3.1324 -3.0622 1.4201 16 6 3.2587 -3.5328 2.8704 17 6 4.0088 -4.8393 2.9111 18 1 4.3606 -5.2886 1.9942 19 6 4.2459 -5.4608 4.1188 20 7 3.8180 -4.9133 5.2353 21 14 5.1763 -7.0798 4.1693 22 1 6.5311 -6.8905 3.5911 23 1 5.2989 -7.5367 5.5768 24 1 4.4393 -8.0991 3.3798 25 1 -0.3634 0.0524 -1.0264 26 1 -0.3634 -0.9149 0.4678 27 1 -0.3633 0.8627 0.5585 28 1 3.2437 1.1515 0.1151 29 1 0.0223 1.6280 -1.5661 30 1 -1.1873 3.7544 -1.8200 31 1 -0.4645 5.7435 -0.5656 32 1 2.6929 3.5012 1.2172 33 1 1.7130 -2.0409 -0.5885 34 1 3.2486 -1.1544 -0.4338 35 1 1.4998 -1.8752 1.8268 36 1 2.5914 -3.8104 0.8407 37 1 4.1267 -2.9232 0.9958 38 1 3.7999 -2.7846 3.4494 39 1 2.2645 -3.6717 3.2953 40 1 3.9845 -5.3507 6.0849 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344805670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:44 Heat of formation + Delta-G solvation = 26.452200 kcal Electronic energy + Delta-G solvation = -21351.380341 eV Core-core repulsion = 17941.257001 eV Total energy + Delta-G solvation = -3410.123340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.38250 -40.03497 -37.28571 -36.76407 -35.01722 -32.95906 -32.24557 -31.44010 -29.27256 -27.75716 -26.68348 -25.63439 -23.56644 -22.84810 -22.19290 -20.69534 -19.76794 -18.83620 -18.00011 -17.72850 -17.00683 -16.36800 -16.01940 -15.55816 -15.21555 -14.56494 -14.42865 -14.26134 -14.11171 -13.44689 -13.34269 -12.98970 -12.54916 -12.49072 -12.13657 -11.94847 -11.88398 -11.76173 -11.41750 -11.33787 -11.18202 -11.04615 -10.94305 -10.60627 -10.28588 -10.06882 -9.93580 -9.47238 -9.23109 -8.64960 -8.39226 -7.95137 -6.03501 -4.06774 -0.43671 0.36222 1.05050 1.15780 1.93087 3.01185 3.30533 3.35411 3.37270 3.96671 4.07719 4.33431 4.39452 4.43303 4.56327 4.63275 4.65047 4.91844 4.99334 5.17647 5.26757 5.30271 5.32367 5.44073 5.51116 5.56659 5.61258 5.68574 5.79412 5.94334 6.19047 6.23139 6.26812 6.33772 6.56895 6.89009 7.34462 7.41737 7.64771 7.73075 7.85395 8.02103 8.37768 9.00166 9.57280 11.07838 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.002376 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.551625 B =11779.564314 C =12606.939167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.136 4.136 4 C -0.033 4.033 5 C -0.071 4.071 6 C -0.116 4.116 7 C -0.066 4.066 8 C -0.042 4.042 9 N 0.028 4.972 10 O -0.157 6.157 11 O -0.165 6.165 12 C -0.049 4.049 13 C 0.088 3.912 14 N -0.686 5.686 15 C 0.065 3.935 16 C 0.026 3.974 17 C -0.524 4.524 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.337 0.663 36 H 0.016 0.984 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.013 0.987 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.246 17.065 -15.718 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.078 4.078 3 C -0.155 4.155 4 C -0.034 4.034 5 C -0.088 4.088 6 C -0.135 4.135 7 C -0.085 4.085 8 C -0.124 4.124 9 N 0.548 4.452 10 O -0.374 6.374 11 O -0.380 6.380 12 C -0.069 4.069 13 C -0.041 4.041 14 N -0.316 5.316 15 C -0.063 4.063 16 C -0.012 4.012 17 C -0.563 4.563 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.893 16.830 -15.754 25.086 hybrid contribution -0.010 -1.172 0.051 1.173 sum -9.903 15.659 -15.704 24.287 Atomic orbital electron populations 1.21193 0.92406 1.03327 1.01775 1.22170 0.95362 0.94845 0.95416 1.21353 0.99809 0.89107 1.05226 1.19060 0.95251 0.93429 0.95616 1.22076 0.92993 0.98510 0.95269 1.21144 1.00931 0.91448 0.99975 1.21080 0.93533 1.00930 0.92918 1.21049 1.02339 0.86457 1.02589 1.43661 0.99638 1.02328 0.99620 1.94571 1.18204 1.91279 1.33313 1.94523 1.55047 1.18210 1.70210 1.21237 0.98999 0.89397 0.97220 1.21019 0.99027 0.92076 0.91959 1.60705 1.24239 1.32664 1.14034 1.22207 0.96438 0.86276 1.01375 1.19064 0.97188 0.95809 0.89121 1.21121 1.36173 1.06303 0.92710 0.92796 1.25005 0.95873 0.97759 0.95702 1.69957 1.46230 1.39209 0.97766 0.86636 0.80432 0.83809 0.76979 1.20186 1.21230 1.20289 0.90993 0.91196 0.91242 0.84924 0.83388 0.83541 0.83165 0.82624 0.94568 0.90397 0.84550 0.96525 0.92189 0.95592 0.96835 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.25 36.00 0.30 -0.76 16 2 C -0.08 -0.79 5.50 -101.26 -0.56 -1.34 16 3 C -0.14 -1.34 9.37 -37.57 -0.35 -1.69 16 4 C -0.03 -0.29 5.11 -105.01 -0.54 -0.82 16 5 C -0.07 -0.46 7.78 -39.20 -0.30 -0.77 16 6 C -0.12 -0.66 10.03 -39.64 -0.40 -1.06 16 7 C -0.07 -0.50 9.55 -39.50 -0.38 -0.87 16 8 C -0.04 -0.42 6.85 -80.01 -0.55 -0.97 16 9 N 0.03 0.35 4.45 33.93 0.15 0.51 16 10 O -0.16 -2.17 18.44 -29.46 -0.54 -2.71 16 11 O -0.16 -2.12 18.44 -29.46 -0.54 -2.66 16 12 C -0.05 -0.49 9.29 -39.19 -0.36 -0.85 16 13 C 0.09 1.11 5.83 -4.97 -0.03 1.08 16 14 N -0.69 -11.34 6.49 -115.06 -0.75 -12.09 16 15 C 0.06 1.30 5.62 -3.83 -0.02 1.28 16 16 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 17 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.07 0.42 6.52 -51.93 -0.34 0.08 16 26 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 27 H 0.07 0.56 6.57 -51.93 -0.34 0.22 16 28 H 0.13 1.34 8.05 -52.49 -0.42 0.92 16 29 H 0.15 0.71 5.49 -52.48 -0.29 0.42 16 30 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 31 H 0.15 0.93 7.60 -52.49 -0.40 0.53 16 32 H 0.16 1.53 7.60 -52.48 -0.40 1.13 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 35 H 0.34 5.41 8.72 -39.29 -0.34 5.07 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -31.60 346.47 -9.94 -41.54 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.45 Total: -0.52 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -3.75 Total: -19.70 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.14 Total: -37.60 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -1.09 Total: -5.37 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.60 -9.94 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344805670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.990 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds