Wall clock time and date at job start Tue Mar 31 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32559 * 120.00477 * 2 1 4 4 C 1.47813 * 120.00102 * 352.93649 * 3 2 1 5 5 C 1.39555 * 120.14095 * 322.82582 * 4 3 2 6 6 C 1.37950 * 119.86066 * 179.97438 * 5 4 3 7 7 C 1.38363 * 120.14185 * 359.97438 * 6 5 4 8 8 C 1.38325 * 120.28172 * 359.72330 * 7 6 5 9 9 N 1.48011 * 119.92888 * 180.28212 * 8 7 6 10 10 O 1.21798 * 119.99903 * 180.27832 * 9 8 7 11 11 O 1.21798 * 119.99707 * 0.26952 * 9 8 7 12 12 C 1.37996 * 120.14567 * 0.55644 * 8 7 6 13 13 C 1.50700 * 119.99606 * 179.97438 * 2 1 3 14 14 N 1.46903 * 109.47344 * 274.99952 * 13 2 1 15 15 C 1.46898 * 110.99965 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.46823 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47310 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99259 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00233 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00075 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00087 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47350 * 59.99568 * 21 19 17 23 23 H 1.48492 * 109.47527 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47057 * 299.99838 * 21 19 17 25 25 H 1.09006 * 109.47306 * 87.07688 * 1 2 3 26 26 H 1.08999 * 109.47787 * 207.08242 * 1 2 3 27 27 H 1.09006 * 109.46788 * 327.08301 * 1 2 3 28 28 H 1.07999 * 120.00480 * 172.93284 * 3 2 1 29 29 H 1.08010 * 120.07110 * 359.97438 * 5 4 3 30 30 H 1.08006 * 119.92958 * 180.02562 * 6 5 4 31 31 H 1.07992 * 119.86148 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.07241 * 179.72316 * 12 8 7 33 33 H 1.08996 * 109.47273 * 35.00007 * 13 2 1 34 34 H 1.09000 * 109.47252 * 154.99799 * 13 2 1 35 35 H 1.00904 * 110.99497 * 56.04401 * 14 13 2 36 36 H 1.09004 * 109.47230 * 299.99967 * 15 14 13 37 37 H 1.08994 * 109.47365 * 60.00144 * 15 14 13 38 38 H 1.08996 * 109.47387 * 299.99714 * 16 15 14 39 39 H 1.09007 * 109.47293 * 59.99907 * 16 15 14 40 40 H 0.96996 * 119.99910 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1479 0.0000 4 6 1.4393 2.4233 -0.1574 5 6 0.3410 2.5005 -1.0149 6 6 -0.3369 3.6935 -1.1570 7 6 0.0697 4.8120 -0.4512 8 6 1.1537 4.7405 0.4050 9 7 1.5781 5.9402 1.1609 10 8 2.5355 5.8800 1.9113 11 8 0.9699 6.9876 1.0323 12 6 1.8439 3.5545 0.5518 13 6 2.2604 -1.3051 0.0006 14 7 2.4007 -1.7890 1.3805 15 6 3.1324 -3.0622 1.4201 16 6 3.2587 -3.5328 2.8704 17 6 4.0088 -4.8393 2.9111 18 1 4.3606 -5.2886 1.9942 19 6 4.2459 -5.4608 4.1188 20 7 3.8180 -4.9133 5.2353 21 14 5.1763 -7.0798 4.1693 22 1 6.5311 -6.8905 3.5911 23 1 5.2989 -7.5367 5.5768 24 1 4.4393 -8.0991 3.3798 25 1 -0.3634 0.0524 -1.0264 26 1 -0.3634 -0.9149 0.4678 27 1 -0.3633 0.8627 0.5585 28 1 3.2437 1.1515 0.1151 29 1 0.0223 1.6280 -1.5661 30 1 -1.1873 3.7544 -1.8200 31 1 -0.4645 5.7435 -0.5656 32 1 2.6929 3.5012 1.2172 33 1 1.7130 -2.0409 -0.5885 34 1 3.2486 -1.1544 -0.4338 35 1 1.4998 -1.8752 1.8268 36 1 2.5914 -3.8104 0.8407 37 1 4.1267 -2.9232 0.9958 38 1 3.7999 -2.7846 3.4494 39 1 2.2645 -3.6717 3.2953 40 1 3.9845 -5.3507 6.0849 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344805670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:44 Heat of formation + Delta-G solvation = 8.412348 kcal Electronic energy + Delta-G solvation = -21352.162608 eV Core-core repulsion = 17941.257001 eV Total energy + Delta-G solvation = -3410.905606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.28678 -40.70495 -38.33137 -37.72733 -36.31932 -34.81322 -32.90413 -32.48037 -30.82814 -28.49210 -27.54534 -27.05283 -25.09202 -23.54066 -23.03638 -22.48826 -20.60370 -19.76501 -18.82296 -18.64902 -18.51062 -17.58420 -17.01757 -16.50326 -16.46834 -15.91742 -15.56734 -15.26203 -14.98547 -14.52691 -14.28106 -14.07247 -13.84128 -13.66231 -13.23316 -13.10009 -12.83755 -12.78549 -12.62315 -12.61119 -12.46329 -12.35935 -12.27953 -11.97143 -11.90359 -11.42382 -11.31797 -10.93501 -10.57314 -10.52211 -9.46185 -9.23922 -8.21416 -6.33346 -1.26461 -0.28767 0.27857 0.35074 1.17524 1.39993 1.43124 1.51139 2.37529 2.40306 3.12102 3.25336 3.47274 3.51287 3.79115 3.82802 3.92035 3.97262 4.01788 4.27241 4.41359 4.49335 4.60042 4.65978 4.69226 4.72733 4.78805 4.86827 4.97564 5.04044 5.05491 5.11992 5.17311 5.42537 5.49960 5.54804 5.65474 5.76663 5.79812 6.10895 6.24553 6.42302 6.50038 6.84323 7.36278 8.90493 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.002376 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.551625 B =11779.564314 C =12606.939167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 C -0.134 4.134 4 C -0.042 4.042 5 C -0.056 4.056 6 C -0.100 4.100 7 C -0.061 4.061 8 C -0.062 4.062 9 N 0.030 4.970 10 O -0.208 6.208 11 O -0.160 6.160 12 C -0.065 4.065 13 C 0.089 3.911 14 N -0.696 5.696 15 C 0.084 3.916 16 C 0.031 3.969 17 C -0.546 4.546 18 H 0.062 0.938 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.265 1.265 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.176 0.824 30 H 0.190 0.810 31 H 0.167 0.833 32 H 0.141 0.859 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.339 0.661 36 H 0.024 0.976 37 H 0.059 0.941 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 16.388 -18.476 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.084 4.084 3 C -0.153 4.153 4 C -0.043 4.043 5 C -0.073 4.073 6 C -0.118 4.118 7 C -0.080 4.080 8 C -0.145 4.145 9 N 0.544 4.456 10 O -0.414 6.414 11 O -0.380 6.380 12 C -0.084 4.084 13 C -0.039 4.039 14 N -0.327 5.327 15 C -0.045 4.045 16 C -0.007 4.007 17 C -0.584 4.584 18 H 0.080 0.920 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.189 1.189 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.138 0.862 29 H 0.193 0.807 30 H 0.208 0.792 31 H 0.185 0.815 32 H 0.159 0.841 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.573 16.146 -18.489 27.138 hybrid contribution 0.433 -0.902 0.818 1.293 sum -11.140 15.244 -17.671 25.860 Atomic orbital electron populations 1.21234 0.90425 1.03101 1.03703 1.22088 0.96586 0.93407 0.96271 1.21352 0.99530 0.89835 1.04615 1.19021 0.96403 0.92241 0.96649 1.22429 0.91304 0.99880 0.93705 1.21623 1.01235 0.89855 0.99075 1.21471 0.92225 1.02523 0.91734 1.21233 1.03988 0.85332 1.03900 1.44042 0.99177 1.02976 0.99411 1.94569 1.19694 1.91770 1.35372 1.94475 1.54566 1.19175 1.69772 1.21201 0.99159 0.90112 0.97911 1.21063 0.99766 0.93570 0.89516 1.60575 1.24377 1.30594 1.17135 1.21790 0.97187 0.88074 0.97422 1.18924 0.95047 0.94495 0.92201 1.21600 1.36329 1.07265 0.93222 0.91953 1.25998 0.96790 1.01817 0.95257 1.70102 1.47615 1.41088 0.98453 0.85470 0.79211 0.78990 0.77188 1.19182 1.20942 1.18933 0.87858 0.91820 0.91048 0.86176 0.80726 0.79243 0.81534 0.84128 0.93186 0.90575 0.84302 0.95793 0.92298 0.99030 0.99047 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.25 71.23 0.59 -1.08 16 2 C -0.08 -1.54 5.50 -17.60 -0.10 -1.64 16 3 C -0.13 -2.53 9.37 23.66 0.22 -2.31 16 4 C -0.04 -0.68 5.11 -20.12 -0.10 -0.78 16 5 C -0.06 -0.51 7.78 22.52 0.18 -0.33 16 6 C -0.10 -0.66 10.03 22.23 0.22 -0.44 16 7 C -0.06 -0.75 9.55 22.32 0.21 -0.53 16 8 C -0.06 -1.23 6.85 36.34 0.25 -0.98 16 9 N 0.03 0.78 4.45 -46.55 -0.21 0.57 16 10 O -0.21 -6.23 18.44 18.89 0.35 -5.88 16 11 O -0.16 -4.12 18.44 18.89 0.35 -3.77 16 12 C -0.06 -1.29 9.29 22.52 0.21 -1.08 16 13 C 0.09 2.12 5.83 85.56 0.50 2.62 16 14 N -0.70 -23.00 6.49 -517.94 -3.36 -26.36 16 15 C 0.08 3.39 5.62 86.30 0.49 3.87 16 16 C 0.03 1.63 5.23 29.85 0.16 1.78 16 17 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 19 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 20 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 21 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 25 H 0.10 0.68 6.52 -2.38 -0.02 0.66 16 26 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 27 H 0.07 0.92 6.57 -2.38 -0.02 0.91 16 28 H 0.12 2.51 8.05 -2.91 -0.02 2.48 16 29 H 0.18 0.70 5.49 -2.91 -0.02 0.68 16 30 H 0.19 -0.26 8.06 -2.91 -0.02 -0.29 16 31 H 0.17 1.51 7.60 -2.91 -0.02 1.49 16 32 H 0.14 3.10 7.60 -2.91 -0.02 3.08 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.83 8.03 -2.39 -0.02 1.81 16 35 H 0.34 10.92 8.72 -89.69 -0.78 10.14 16 36 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H -0.01 -0.52 8.14 -2.39 -0.02 -0.53 16 39 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 40 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -71.39 346.47 3.23 -68.17 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.27 Total: 9.26 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 3.52 Total: -31.14 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -3.28 Total: -82.62 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.70 Total: -9.65 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -71.39 3.23 -68.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344805670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.580 kcal (2) G-P(sol) polarization free energy of solvation -71.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds