Wall clock time and date at job start Tue Mar 31 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32569 * 120.00349 * 2 1 4 4 C 1.47811 * 120.00245 * 181.32184 * 3 2 1 5 5 C 1.39557 * 120.13969 * 316.95627 * 4 3 2 6 6 C 1.37950 * 119.85386 * 179.79081 * 5 4 3 7 7 C 1.38362 * 120.14533 * 0.49062 * 6 5 4 8 8 C 1.38328 * 120.28439 * 359.74044 * 7 6 5 9 9 N 1.48005 * 119.93093 * 180.02562 * 8 7 6 10 10 O 1.21801 * 120.00212 * 180.02562 * 9 8 7 11 11 O 1.21804 * 119.99602 * 0.02562 * 9 8 7 12 12 C 1.37994 * 120.14278 * 0.02562 * 8 7 6 13 13 C 1.50700 * 120.00032 * 180.02562 * 2 1 3 14 14 N 1.46902 * 109.47239 * 280.49757 * 13 2 1 15 15 C 1.46896 * 111.00429 * 186.05315 * 14 13 2 16 16 C 1.52994 * 109.47264 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47180 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00234 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00376 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99927 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47077 * 90.00103 * 21 19 17 23 23 H 1.48498 * 109.47481 * 210.00035 * 21 19 17 24 24 H 1.48501 * 109.47190 * 330.00387 * 21 19 17 25 25 H 1.08998 * 109.47132 * 270.00316 * 1 2 3 26 26 H 1.09005 * 109.46838 * 29.99815 * 1 2 3 27 27 H 1.08994 * 109.47336 * 150.00008 * 1 2 3 28 28 H 1.07997 * 119.99707 * 1.32047 * 3 2 1 29 29 H 1.08003 * 120.06968 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.92602 * 180.20965 * 6 5 4 31 31 H 1.07998 * 119.85999 * 179.71900 * 7 6 5 32 32 H 1.08000 * 120.07476 * 179.97438 * 12 8 7 33 33 H 1.09000 * 109.47436 * 40.49658 * 13 2 1 34 34 H 1.09000 * 109.47424 * 160.49650 * 13 2 1 35 35 H 1.00899 * 110.99840 * 310.00683 * 14 13 2 36 36 H 1.09010 * 109.46813 * 299.99803 * 15 14 13 37 37 H 1.08997 * 109.47310 * 59.99294 * 15 14 13 38 38 H 1.08999 * 109.47491 * 299.99531 * 16 15 14 39 39 H 1.09001 * 109.47242 * 60.00303 * 16 15 14 40 40 H 0.97001 * 120.00669 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1480 0.0000 4 6 3.6477 1.1482 -0.0295 5 6 4.3646 0.2568 0.7699 6 6 5.7437 0.2590 0.7344 7 6 6.4163 1.1494 -0.0837 8 6 5.7116 2.0388 -0.8748 9 7 6.4391 2.9874 -1.7475 10 8 5.8199 3.7714 -2.4443 11 8 7.6569 2.9840 -1.7687 12 6 4.3319 2.0435 -0.8523 13 6 2.2605 -1.3051 -0.0006 14 7 2.2868 -1.8560 1.3610 15 6 3.1340 -3.0542 1.4279 16 6 3.1359 -3.5982 2.8579 17 6 4.0045 -4.8278 2.9264 18 1 4.5047 -5.1857 2.0387 19 6 4.1597 -5.4965 4.1221 20 7 4.9181 -6.5693 4.1820 21 14 3.2938 -4.8780 5.6574 22 1 1.9557 -5.5135 5.7611 23 1 4.1007 -5.2251 6.8547 24 1 3.1366 -3.4035 5.5769 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6301 2.0832 0.0216 29 1 3.8408 -0.4359 1.4120 30 1 6.2996 -0.4326 1.3501 31 1 7.4961 1.1502 -0.1044 32 1 3.7828 2.7386 -1.4701 33 1 1.7654 -2.0102 -0.6683 34 1 3.2811 -1.1353 -0.3436 35 1 2.5904 -1.1609 2.0264 36 1 2.7429 -3.8139 0.7510 37 1 4.1518 -2.7963 1.1354 38 1 3.5267 -2.8388 3.5351 39 1 2.1179 -3.8563 3.1498 40 1 5.0270 -7.0400 5.0231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344805671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:47 Heat of formation + Delta-G solvation = 37.743490 kcal Electronic energy + Delta-G solvation = -22226.436754 eV Core-core repulsion = 18816.803042 eV Total energy + Delta-G solvation = -3409.633713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.35437 -40.14847 -37.45363 -36.74071 -34.98804 -32.83647 -32.19830 -31.73859 -30.00872 -27.27448 -26.68648 -25.89044 -23.35468 -22.90084 -22.43487 -20.67101 -19.74949 -18.81908 -17.86649 -17.70502 -17.33440 -16.87547 -15.89896 -15.54258 -15.04714 -14.63457 -14.49670 -14.26443 -13.99898 -13.33883 -13.21864 -13.05205 -12.83349 -12.66033 -12.37299 -12.02438 -11.77246 -11.70027 -11.44208 -11.40924 -11.32057 -11.27058 -11.08314 -10.35239 -10.18813 -9.94882 -9.90334 -9.80350 -9.35111 -8.72423 -8.63750 -8.20413 -6.14042 -4.13681 -0.37054 0.44637 1.12422 1.19765 1.85229 3.05706 3.24713 3.32471 3.34835 4.02632 4.18560 4.36574 4.37848 4.48756 4.50592 4.63622 4.70188 4.75238 5.00799 5.20170 5.28155 5.36349 5.44307 5.48718 5.55758 5.58991 5.64692 5.73265 5.86011 5.97480 5.98267 6.03320 6.20923 6.26636 6.45842 6.58341 6.90739 7.19681 7.36322 7.45582 7.50611 7.71716 8.41421 8.89200 9.47625 10.99053 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003613 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.625645 B = 7748.305309 C = 8983.922419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 C -0.150 4.150 4 C -0.042 4.042 5 C -0.069 4.069 6 C -0.110 4.110 7 C -0.059 4.059 8 C -0.045 4.045 9 N 0.031 4.969 10 O -0.165 6.165 11 O -0.162 6.162 12 C -0.052 4.052 13 C 0.072 3.928 14 N -0.684 5.684 15 C 0.069 3.931 16 C -0.009 4.009 17 C -0.525 4.525 18 H 0.071 0.929 19 C 0.069 3.931 20 N -0.901 5.901 21 Si 0.882 3.118 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.130 0.870 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.333 0.667 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.013 0.987 39 H 0.022 0.978 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 17.707 -8.689 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.169 4.169 4 C -0.043 4.043 5 C -0.087 4.087 6 C -0.129 4.129 7 C -0.078 4.078 8 C -0.128 4.128 9 N 0.549 4.451 10 O -0.380 6.380 11 O -0.378 6.378 12 C -0.071 4.071 13 C -0.057 4.057 14 N -0.318 5.318 15 C -0.058 4.058 16 C -0.047 4.047 17 C -0.563 4.563 18 H 0.089 0.911 19 C -0.133 4.133 20 N -0.540 5.540 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.190 1.190 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.148 0.852 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.170 0.830 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.154 0.846 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.031 0.969 39 H 0.041 0.959 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.224 16.734 -8.231 19.367 hybrid contribution 0.763 0.774 0.566 1.225 sum -4.461 17.509 -7.665 19.627 Atomic orbital electron populations 1.20800 0.90726 1.02500 1.02987 1.22252 0.96649 0.93959 0.94564 1.21348 0.90181 0.98538 1.06840 1.18976 0.94325 0.95080 0.95873 1.22351 0.94612 0.95892 0.95890 1.21300 0.94370 0.98520 0.98700 1.21142 1.02059 0.92019 0.92616 1.21009 0.92606 0.98094 1.01057 1.43648 1.01211 1.00361 0.99842 1.94528 1.69205 1.34865 1.39398 1.94540 0.95595 1.75897 1.71767 1.21059 0.90894 0.97978 0.97217 1.21323 0.98156 0.93300 0.92876 1.60808 1.57856 1.09072 1.04049 1.22062 0.92768 0.90041 1.00948 1.19549 0.97488 0.96434 0.91229 1.21020 1.28945 1.09335 0.97004 0.91080 1.25003 0.94806 0.94554 0.98944 1.69904 1.38786 1.18580 1.26701 0.86749 0.79816 0.79845 0.82661 1.20190 1.21424 1.19047 0.90289 0.91871 0.91117 0.85192 0.83535 0.82904 0.82924 0.82952 0.89962 0.93967 0.84621 0.91268 0.95744 0.96911 0.95943 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.04 36.00 0.36 -0.58 16 2 C -0.07 -0.72 5.51 -101.26 -0.56 -1.28 16 3 C -0.15 -1.35 9.36 -37.57 -0.35 -1.70 16 4 C -0.04 -0.42 5.13 -105.01 -0.54 -0.96 16 5 C -0.07 -0.73 7.36 -39.20 -0.29 -1.02 16 6 C -0.11 -1.11 10.03 -39.64 -0.40 -1.51 16 7 C -0.06 -0.61 9.55 -39.50 -0.38 -0.98 16 8 C -0.04 -0.51 6.84 -80.01 -0.55 -1.06 16 9 N 0.03 0.40 4.45 33.93 0.15 0.55 16 10 O -0.16 -2.23 18.44 -29.46 -0.54 -2.78 16 11 O -0.16 -2.23 18.44 -29.46 -0.54 -2.78 16 12 C -0.05 -0.53 9.29 -39.19 -0.36 -0.90 16 13 C 0.07 0.85 4.86 -4.97 -0.02 0.82 16 14 N -0.68 -9.76 6.14 -115.06 -0.71 -10.47 16 15 C 0.07 1.24 5.41 -3.83 -0.02 1.22 16 16 C -0.01 -0.20 4.30 -27.88 -0.12 -0.32 16 17 C -0.52 -14.24 9.66 -34.44 -0.33 -14.57 16 18 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 21 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 27 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.13 0.94 8.05 -52.49 -0.42 0.52 16 29 H 0.15 1.65 3.75 -52.48 -0.20 1.45 16 30 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.15 1.36 7.60 -52.49 -0.40 0.96 16 32 H 0.15 1.34 7.60 -52.49 -0.40 0.94 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.51 5.11 -51.93 -0.27 0.24 16 35 H 0.33 4.47 6.47 -39.29 -0.25 4.21 16 36 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 39 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -30.26 338.95 -9.33 -39.60 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.24 Total: 1.67 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -3.66 Total: -21.00 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.22 Total: -36.15 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -1.09 Total: -5.55 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.26 -9.33 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344805671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.339 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds