Wall clock time and date at job start Tue Mar 31 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32569 * 120.00349 * 2 1 4 4 C 1.47811 * 120.00245 * 181.32184 * 3 2 1 5 5 C 1.39557 * 120.13969 * 316.95627 * 4 3 2 6 6 C 1.37950 * 119.85386 * 179.79081 * 5 4 3 7 7 C 1.38362 * 120.14533 * 0.49062 * 6 5 4 8 8 C 1.38328 * 120.28439 * 359.74044 * 7 6 5 9 9 N 1.48005 * 119.93093 * 180.02562 * 8 7 6 10 10 O 1.21801 * 120.00212 * 180.02562 * 9 8 7 11 11 O 1.21804 * 119.99602 * 0.02562 * 9 8 7 12 12 C 1.37994 * 120.14278 * 0.02562 * 8 7 6 13 13 C 1.50700 * 120.00032 * 180.02562 * 2 1 3 14 14 N 1.46902 * 109.47239 * 280.49757 * 13 2 1 15 15 C 1.46896 * 111.00429 * 186.05315 * 14 13 2 16 16 C 1.52994 * 109.47264 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47180 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00234 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00376 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99927 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47077 * 90.00103 * 21 19 17 23 23 H 1.48498 * 109.47481 * 210.00035 * 21 19 17 24 24 H 1.48501 * 109.47190 * 330.00387 * 21 19 17 25 25 H 1.08998 * 109.47132 * 270.00316 * 1 2 3 26 26 H 1.09005 * 109.46838 * 29.99815 * 1 2 3 27 27 H 1.08994 * 109.47336 * 150.00008 * 1 2 3 28 28 H 1.07997 * 119.99707 * 1.32047 * 3 2 1 29 29 H 1.08003 * 120.06968 * 0.02562 * 5 4 3 30 30 H 1.08003 * 119.92602 * 180.20965 * 6 5 4 31 31 H 1.07998 * 119.85999 * 179.71900 * 7 6 5 32 32 H 1.08000 * 120.07476 * 179.97438 * 12 8 7 33 33 H 1.09000 * 109.47436 * 40.49658 * 13 2 1 34 34 H 1.09000 * 109.47424 * 160.49650 * 13 2 1 35 35 H 1.00899 * 110.99840 * 310.00683 * 14 13 2 36 36 H 1.09010 * 109.46813 * 299.99803 * 15 14 13 37 37 H 1.08997 * 109.47310 * 59.99294 * 15 14 13 38 38 H 1.08999 * 109.47491 * 299.99531 * 16 15 14 39 39 H 1.09001 * 109.47242 * 60.00303 * 16 15 14 40 40 H 0.97001 * 120.00669 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1480 0.0000 4 6 3.6477 1.1482 -0.0295 5 6 4.3646 0.2568 0.7699 6 6 5.7437 0.2590 0.7344 7 6 6.4163 1.1494 -0.0837 8 6 5.7116 2.0388 -0.8748 9 7 6.4391 2.9874 -1.7475 10 8 5.8199 3.7714 -2.4443 11 8 7.6569 2.9840 -1.7687 12 6 4.3319 2.0435 -0.8523 13 6 2.2605 -1.3051 -0.0006 14 7 2.2868 -1.8560 1.3610 15 6 3.1340 -3.0542 1.4279 16 6 3.1359 -3.5982 2.8579 17 6 4.0045 -4.8278 2.9264 18 1 4.5047 -5.1857 2.0387 19 6 4.1597 -5.4965 4.1221 20 7 4.9181 -6.5693 4.1820 21 14 3.2938 -4.8780 5.6574 22 1 1.9557 -5.5135 5.7611 23 1 4.1007 -5.2251 6.8547 24 1 3.1366 -3.4035 5.5769 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.6301 2.0832 0.0216 29 1 3.8408 -0.4359 1.4120 30 1 6.2996 -0.4326 1.3501 31 1 7.4961 1.1502 -0.1044 32 1 3.7828 2.7386 -1.4701 33 1 1.7654 -2.0102 -0.6683 34 1 3.2811 -1.1353 -0.3436 35 1 2.5904 -1.1609 2.0264 36 1 2.7429 -3.8139 0.7510 37 1 4.1518 -2.7963 1.1354 38 1 3.5267 -2.8388 3.5351 39 1 2.1179 -3.8563 3.1498 40 1 5.0270 -7.0400 5.0231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344805671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:46 Heat of formation + Delta-G solvation = 21.126327 kcal Electronic energy + Delta-G solvation = -22227.157328 eV Core-core repulsion = 18816.803042 eV Total energy + Delta-G solvation = -3410.354287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.32814 -40.98880 -38.44304 -37.75289 -36.24063 -34.67391 -33.04695 -32.65397 -31.58093 -28.08158 -27.56669 -27.25198 -24.81778 -23.72675 -23.30515 -22.33693 -20.65860 -19.80598 -18.97414 -18.71712 -18.67961 -18.21159 -16.72932 -16.52532 -16.30540 -16.00206 -15.59828 -15.22725 -15.09556 -14.81268 -14.49378 -14.09302 -13.80274 -13.70353 -13.38583 -13.05197 -13.02024 -12.79715 -12.76581 -12.47944 -12.38273 -12.36756 -12.20123 -11.96886 -11.71128 -11.58755 -11.41364 -10.98123 -10.76933 -10.63687 -9.49505 -9.37562 -8.29486 -6.34301 -1.31157 -0.33813 0.20409 0.27771 1.09510 1.38840 1.39086 1.51025 2.24668 2.36543 3.06693 3.24403 3.29916 3.40320 3.65272 3.72553 3.82191 3.88075 3.95535 4.19732 4.41092 4.45382 4.55640 4.59237 4.66630 4.76185 4.81057 4.84078 4.93181 4.94039 4.96279 5.08796 5.22647 5.26899 5.39038 5.46545 5.51251 5.63034 5.73178 6.01715 6.23929 6.41918 6.42301 6.74769 7.30983 8.87002 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003613 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.625645 B = 7748.305309 C = 8983.922419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.043 4.043 5 C -0.074 4.074 6 C -0.113 4.113 7 C -0.059 4.059 8 C -0.057 4.057 9 N 0.031 4.969 10 O -0.171 6.171 11 O -0.184 6.184 12 C -0.048 4.048 13 C 0.073 3.927 14 N -0.680 5.680 15 C 0.084 3.916 16 C -0.004 4.004 17 C -0.532 4.532 18 H 0.032 0.968 19 C 0.006 3.994 20 N -0.951 5.951 21 Si 0.952 3.048 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.242 1.242 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.155 0.845 29 H 0.143 0.857 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.340 0.660 36 H 0.057 0.943 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.021 0.979 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 19.747 -8.123 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.156 4.156 4 C -0.044 4.044 5 C -0.092 4.092 6 C -0.131 4.131 7 C -0.078 4.078 8 C -0.140 4.140 9 N 0.547 4.453 10 O -0.387 6.387 11 O -0.395 6.395 12 C -0.066 4.066 13 C -0.055 4.055 14 N -0.315 5.315 15 C -0.045 4.045 16 C -0.042 4.042 17 C -0.570 4.570 18 H 0.051 0.949 19 C -0.191 4.191 20 N -0.592 5.592 21 Si 0.775 3.225 22 H -0.196 1.196 23 H -0.213 1.213 24 H -0.165 1.165 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.173 0.827 29 H 0.160 0.840 30 H 0.180 0.820 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.162 0.838 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.969 18.804 -7.688 21.477 hybrid contribution 1.336 0.102 0.311 1.376 sum -5.633 18.906 -7.376 21.062 Atomic orbital electron populations 1.20808 0.89491 1.03355 1.03112 1.22184 0.97359 0.92852 0.95768 1.21542 0.89457 0.99302 1.05338 1.19093 0.95004 0.94695 0.95582 1.22399 0.94867 0.95920 0.96027 1.21427 0.94407 0.98573 0.98726 1.21287 1.02674 0.91625 0.92195 1.21163 0.93134 0.98294 1.01423 1.43888 1.01163 1.00426 0.99825 1.94508 1.69088 1.35315 1.39780 1.94533 0.96140 1.76460 1.72415 1.21229 0.90416 0.97973 0.97032 1.21319 0.98527 0.94480 0.91191 1.60670 1.56599 1.08374 1.05829 1.21693 0.93490 0.91377 0.97944 1.19438 0.96037 0.94569 0.94178 1.21392 1.28952 1.11026 0.95656 0.94947 1.25987 0.95654 0.94681 1.02810 1.70063 1.40940 1.20413 1.27777 0.85637 0.78432 0.80539 0.77857 1.19553 1.21316 1.16546 0.90443 0.89836 0.91554 0.82716 0.84022 0.81987 0.81995 0.81477 0.90312 0.94122 0.83761 0.92475 0.95741 0.95857 0.96017 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.04 71.23 0.72 -0.79 16 2 C -0.08 -1.35 5.51 -17.60 -0.10 -1.45 16 3 C -0.14 -2.01 9.36 23.65 0.22 -1.79 16 4 C -0.04 -0.75 5.13 -20.12 -0.10 -0.85 16 5 C -0.07 -1.42 7.36 22.52 0.17 -1.25 16 6 C -0.11 -2.11 10.03 22.23 0.22 -1.88 16 7 C -0.06 -1.13 9.55 22.32 0.21 -0.92 16 8 C -0.06 -1.22 6.84 36.34 0.25 -0.97 16 9 N 0.03 0.80 4.45 -46.56 -0.21 0.59 16 10 O -0.17 -4.48 18.44 18.88 0.35 -4.13 16 11 O -0.18 -5.00 18.44 18.88 0.35 -4.65 16 12 C -0.05 -0.86 9.29 22.52 0.21 -0.65 16 13 C 0.07 1.58 4.86 85.56 0.42 2.00 16 14 N -0.68 -18.13 6.14 -517.94 -3.18 -21.31 16 15 C 0.08 2.92 5.41 86.30 0.47 3.38 16 16 C 0.00 -0.19 4.30 29.85 0.13 -0.06 16 17 C -0.53 -29.26 9.66 25.60 0.25 -29.02 16 18 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 19 C 0.01 0.32 5.47 84.65 0.46 0.78 16 20 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16 21 Si 0.95 42.65 27.47 68.60 1.88 44.54 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 0.79 8.07 -2.38 -0.02 0.77 16 27 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 28 H 0.16 1.55 8.05 -2.91 -0.02 1.52 16 29 H 0.14 2.89 3.75 -2.91 -0.01 2.88 16 30 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.16 2.75 7.60 -2.91 -0.02 2.73 16 32 H 0.17 2.49 7.60 -2.91 -0.02 2.47 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 0.91 5.11 -2.39 -0.01 0.90 16 35 H 0.34 8.30 6.47 -89.69 -0.58 7.72 16 36 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 39 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 40 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -65.60 338.95 3.43 -62.17 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.42 Total: 14.29 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 3.52 Total: -33.47 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -3.09 Total: -78.74 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.70 Total: -8.79 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.54 kcal Total: -65.60 3.43 -62.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344805671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.297 kcal (2) G-P(sol) polarization free energy of solvation -65.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds