Wall clock time and date at job start Tue Mar 31 2020 06:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47423 * 2 1 4 4 N 1.46501 * 109.47566 * 179.55402 * 3 2 1 5 5 C 1.37099 * 119.99610 * 96.89571 * 4 3 2 6 6 H 1.08000 * 119.99533 * 160.93105 * 5 4 3 7 7 C 1.38945 * 120.00126 * 340.93824 * 5 4 3 8 8 N 1.31412 * 120.00354 * 356.27559 * 7 5 4 9 9 Si 1.86801 * 119.99858 * 176.27996 * 7 5 4 10 10 H 1.48499 * 109.47406 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47235 * 119.99646 * 9 7 5 12 12 H 1.48498 * 109.47130 * 239.99938 * 9 7 5 13 13 C 1.34776 * 120.00105 * 276.90573 * 4 3 2 14 14 O 1.21293 * 119.99858 * 185.32123 * 13 4 3 15 15 C 1.50693 * 120.00015 * 5.32518 * 13 4 3 16 16 H 1.08995 * 109.68743 * 19.26865 * 15 13 4 17 17 C 1.53296 * 109.68659 * 139.84162 * 15 13 4 18 18 C 1.52923 * 110.44715 * 176.00730 * 17 15 13 19 19 C 1.51401 * 109.71812 * 300.95481 * 18 17 15 20 20 O 1.21441 * 121.34505 * 210.90947 * 19 18 17 21 21 C 1.41532 * 117.31253 * 30.93258 * 19 18 17 22 22 C 1.37272 * 129.84188 * 178.43974 * 21 19 18 23 23 C 1.39924 * 106.74701 * 180.36797 * 22 21 19 24 24 C 1.35938 * 107.97947 * 359.96788 * 23 22 21 25 25 N 1.34092 * 109.01970 * 359.87038 * 24 23 22 26 26 H 1.08999 * 109.47218 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47466 * 300.00064 * 1 2 3 28 28 H 1.09004 * 109.46749 * 59.99634 * 1 2 3 29 29 H 1.09006 * 109.47168 * 120.00667 * 2 1 3 30 30 H 1.09000 * 109.47466 * 239.99935 * 2 1 3 31 31 H 1.09000 * 109.47335 * 299.55969 * 3 2 1 32 32 H 1.09005 * 109.46757 * 59.56053 * 3 2 1 33 33 H 0.96998 * 120.00230 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.30736 * 296.30276 * 17 15 13 35 35 H 1.08995 * 109.31095 * 55.71230 * 17 15 13 36 36 H 1.08992 * 109.43446 * 180.88269 * 18 17 15 37 37 H 1.08999 * 109.38323 * 60.99889 * 18 17 15 38 38 H 1.07994 * 126.62659 * 0.35455 * 22 21 19 39 39 H 1.07997 * 126.01415 * 179.97438 * 23 22 21 40 40 H 1.08006 * 125.49196 * 179.90523 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0108 5 6 4.1990 1.5820 -1.1633 6 1 5.2345 1.8885 -1.1453 7 6 3.5703 1.3292 -2.3763 8 7 2.3333 0.8861 -2.3955 9 14 4.4835 1.6191 -3.9799 10 1 5.8519 2.1161 -3.6875 11 1 4.5705 0.3448 -4.7374 12 1 3.7538 2.6275 -4.7898 13 6 4.1704 1.3052 1.1747 14 8 5.3792 1.4017 1.1973 15 6 3.4124 1.0317 2.4482 16 1 2.4218 0.6445 2.2099 17 6 4.1778 0.0085 3.2950 18 6 3.4748 -0.2081 4.6357 19 6 3.3849 1.1053 5.3834 20 8 3.4018 1.1437 6.5971 21 6 3.2799 2.2865 4.6109 22 6 3.1560 3.5928 5.0140 23 6 3.0824 4.3682 3.8515 24 6 3.1626 3.5314 2.7832 25 7 3.2854 2.2709 3.2237 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6832 1.9541 -0.8939 32 1 1.6702 1.9585 0.8861 33 1 1.8945 0.7093 -3.2423 34 1 4.2285 -0.9384 2.7576 35 1 5.1895 0.3729 3.4735 36 1 4.0404 -0.9256 5.2300 37 1 2.4709 -0.5945 4.4595 38 1 3.1216 3.9526 6.0316 39 1 2.9801 5.4425 3.8102 40 1 3.1327 3.8332 1.7466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345150498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:40 Heat of formation + Delta-G solvation = -10.774340 kcal Electronic energy + Delta-G solvation = -24266.031490 eV Core-core repulsion = 20854.293887 eV Total energy + Delta-G solvation = -3411.737604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68364 -38.91200 -38.44076 -35.81617 -34.89245 -32.54453 -31.64516 -31.03257 -29.08101 -27.67884 -26.05541 -24.73171 -23.04590 -21.97882 -21.02004 -20.64796 -19.31574 -18.00557 -17.29413 -17.12834 -16.55901 -15.42165 -15.08086 -14.70065 -14.52622 -14.22927 -13.94030 -13.91639 -13.87102 -13.44670 -13.16684 -12.45811 -12.40026 -12.13859 -12.06275 -12.00501 -11.88864 -11.52285 -11.50588 -11.20462 -11.04332 -10.86492 -10.63341 -10.45678 -10.32987 -9.97891 -9.57335 -9.10127 -8.93014 -8.37521 -8.00782 -7.92995 -6.48823 -4.13255 1.29264 2.66667 2.88897 3.06327 3.13236 3.19037 3.40012 3.76087 3.92459 4.28959 4.43845 4.65123 4.89617 4.96727 5.10171 5.22976 5.27162 5.41088 5.50088 5.61896 5.69889 5.77465 5.84741 5.85552 5.94861 6.04896 6.19712 6.22198 6.30184 6.42847 6.44153 6.62655 6.73178 6.97233 7.13505 7.18839 7.30445 7.45297 7.51882 7.76335 7.83732 8.24172 8.90225 9.11570 9.63105 10.43730 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.005388 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.670561 B = 5195.671094 C = 5476.234818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.119 3.881 4 N -0.426 5.426 5 C -0.299 4.299 6 H 0.104 0.896 7 C 0.030 3.970 8 N -0.871 5.871 9 Si 0.932 3.068 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.430 3.570 14 O -0.573 6.573 15 C 0.112 3.888 16 H 0.109 0.891 17 C -0.112 4.112 18 C -0.168 4.168 19 C 0.427 3.573 20 O -0.472 6.472 21 C -0.112 4.112 22 C -0.090 4.090 23 C -0.233 4.233 24 C 0.064 3.936 25 N -0.398 5.398 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.027 0.973 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.025 0.975 33 H 0.269 0.731 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.556 -0.152 5.505 7.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C -0.004 4.004 4 N -0.144 5.144 5 C -0.427 4.427 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.511 5.511 9 Si 0.759 3.241 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.205 1.205 13 C 0.216 3.784 14 O -0.457 6.457 15 C 0.008 3.992 16 H 0.126 0.874 17 C -0.150 4.150 18 C -0.206 4.206 19 C 0.309 3.691 20 O -0.350 6.350 21 C -0.219 4.219 22 C -0.116 4.116 23 C -0.257 4.257 24 C -0.076 4.076 25 N -0.073 5.073 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.045 -0.501 5.737 7.038 hybrid contribution 0.115 0.071 -1.067 1.075 sum -3.930 -0.430 4.671 6.119 Atomic orbital electron populations 1.21603 0.96962 1.00238 1.00830 1.22006 0.94417 0.97973 1.01906 1.21753 0.80079 0.97292 1.01308 1.43873 1.05705 1.59346 1.05430 1.19860 0.97698 1.43228 0.81934 0.87823 1.25369 0.96265 0.95818 0.99814 1.69992 1.11396 1.42955 1.26804 0.85749 0.79627 0.78115 0.80628 1.19211 1.20545 1.20533 1.19576 0.87853 0.86651 0.84329 1.90567 1.13717 1.55687 1.85698 1.22130 1.01914 0.83451 0.91714 0.87362 1.21629 1.00467 0.99231 0.93699 1.22216 1.03511 0.97653 0.97215 1.20140 0.71470 0.89245 0.88223 1.90561 1.39980 1.89302 1.15144 1.19978 1.21797 0.96956 0.83203 1.21179 1.00764 0.90757 0.98903 1.20958 1.14087 0.99306 0.91315 1.21965 1.02482 0.82804 1.00305 1.44448 1.50746 1.06450 1.05609 0.93924 0.94453 0.92372 0.95476 0.87909 0.86252 0.95630 0.92005 0.88636 0.89282 0.88128 0.88143 0.83780 0.83977 0.81598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.15 0.37 -1.75 16 2 C -0.12 -2.28 5.34 -26.74 -0.14 -2.43 16 3 C 0.12 2.36 4.18 -4.04 -0.02 2.34 16 4 N -0.43 -9.68 2.64 -114.81 -0.30 -9.98 16 5 C -0.30 -7.47 9.41 -14.93 -0.14 -7.61 16 6 H 0.10 2.78 7.29 -52.49 -0.38 2.40 16 7 C 0.03 0.70 5.27 -17.47 -0.09 0.61 16 8 N -0.87 -19.76 7.89 55.50 0.44 -19.33 16 9 Si 0.93 18.96 29.55 -169.99 -5.02 13.93 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 13 C 0.43 9.53 5.99 -10.99 -0.07 9.47 16 14 O -0.57 -14.84 15.98 5.55 0.09 -14.75 16 15 C 0.11 2.00 2.57 -68.80 -0.18 1.82 16 16 H 0.11 1.80 4.72 -51.93 -0.25 1.56 16 17 C -0.11 -1.76 5.01 -26.62 -0.13 -1.89 16 18 C -0.17 -2.26 6.11 -27.58 -0.17 -2.43 16 19 C 0.43 7.01 6.95 -32.71 -0.23 6.79 16 20 O -0.47 -8.64 17.81 5.42 0.10 -8.54 16 21 C -0.11 -1.91 6.50 -83.84 -0.54 -2.46 16 22 C -0.09 -1.43 10.82 -39.30 -0.43 -1.85 16 23 C -0.23 -3.56 10.83 -39.78 -0.43 -3.99 16 24 C 0.06 1.10 10.61 -17.39 -0.18 0.92 16 25 N -0.40 -7.01 3.03 -108.52 -0.33 -7.34 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.46 6.48 -51.93 -0.34 0.13 16 30 H 0.10 2.19 6.23 -51.93 -0.32 1.86 16 31 H 0.12 2.60 5.87 -51.93 -0.30 2.29 16 32 H 0.03 0.46 6.93 -51.93 -0.36 0.10 16 33 H 0.27 5.85 8.31 -40.82 -0.34 5.51 16 34 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.09 1.57 7.74 -51.93 -0.40 1.16 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.17 2.82 7.97 -52.48 -0.42 2.40 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -27.90 324.23 -7.82 -35.72 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.29 Total: 7.88 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.38 Total: -2.47 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.19 Total: -36.65 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.19 Total: -23.29 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.90 -7.82 -35.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345150498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.944 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds