Wall clock time and date at job start Tue Mar 31 2020 06:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47423 * 2 1 4 4 N 1.46501 * 109.47566 * 179.55402 * 3 2 1 5 5 C 1.37099 * 119.99610 * 96.89571 * 4 3 2 6 6 H 1.08000 * 119.99533 * 160.93105 * 5 4 3 7 7 C 1.38945 * 120.00126 * 340.93824 * 5 4 3 8 8 N 1.31412 * 120.00354 * 356.27559 * 7 5 4 9 9 Si 1.86801 * 119.99858 * 176.27996 * 7 5 4 10 10 H 1.48499 * 109.47406 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47235 * 119.99646 * 9 7 5 12 12 H 1.48498 * 109.47130 * 239.99938 * 9 7 5 13 13 C 1.34776 * 120.00105 * 276.90573 * 4 3 2 14 14 O 1.21293 * 119.99858 * 185.32123 * 13 4 3 15 15 C 1.50693 * 120.00015 * 5.32518 * 13 4 3 16 16 H 1.08995 * 109.68743 * 19.26865 * 15 13 4 17 17 C 1.53296 * 109.68659 * 139.84162 * 15 13 4 18 18 C 1.52923 * 110.44715 * 176.00730 * 17 15 13 19 19 C 1.51401 * 109.71812 * 300.95481 * 18 17 15 20 20 O 1.21441 * 121.34505 * 210.90947 * 19 18 17 21 21 C 1.41532 * 117.31253 * 30.93258 * 19 18 17 22 22 C 1.37272 * 129.84188 * 178.43974 * 21 19 18 23 23 C 1.39924 * 106.74701 * 180.36797 * 22 21 19 24 24 C 1.35938 * 107.97947 * 359.96788 * 23 22 21 25 25 N 1.34092 * 109.01970 * 359.87038 * 24 23 22 26 26 H 1.08999 * 109.47218 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47466 * 300.00064 * 1 2 3 28 28 H 1.09004 * 109.46749 * 59.99634 * 1 2 3 29 29 H 1.09006 * 109.47168 * 120.00667 * 2 1 3 30 30 H 1.09000 * 109.47466 * 239.99935 * 2 1 3 31 31 H 1.09000 * 109.47335 * 299.55969 * 3 2 1 32 32 H 1.09005 * 109.46757 * 59.56053 * 3 2 1 33 33 H 0.96998 * 120.00230 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.30736 * 296.30276 * 17 15 13 35 35 H 1.08995 * 109.31095 * 55.71230 * 17 15 13 36 36 H 1.08992 * 109.43446 * 180.88269 * 18 17 15 37 37 H 1.08999 * 109.38323 * 60.99889 * 18 17 15 38 38 H 1.07994 * 126.62659 * 0.35455 * 22 21 19 39 39 H 1.07997 * 126.01415 * 179.97438 * 23 22 21 40 40 H 1.08006 * 125.49196 * 179.90523 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0108 5 6 4.1990 1.5820 -1.1633 6 1 5.2345 1.8885 -1.1453 7 6 3.5703 1.3292 -2.3763 8 7 2.3333 0.8861 -2.3955 9 14 4.4835 1.6191 -3.9799 10 1 5.8519 2.1161 -3.6875 11 1 4.5705 0.3448 -4.7374 12 1 3.7538 2.6275 -4.7898 13 6 4.1704 1.3052 1.1747 14 8 5.3792 1.4017 1.1973 15 6 3.4124 1.0317 2.4482 16 1 2.4218 0.6445 2.2099 17 6 4.1778 0.0085 3.2950 18 6 3.4748 -0.2081 4.6357 19 6 3.3849 1.1053 5.3834 20 8 3.4018 1.1437 6.5971 21 6 3.2799 2.2865 4.6109 22 6 3.1560 3.5928 5.0140 23 6 3.0824 4.3682 3.8515 24 6 3.1626 3.5314 2.7832 25 7 3.2854 2.2709 3.2237 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6832 1.9541 -0.8939 32 1 1.6702 1.9585 0.8861 33 1 1.8945 0.7093 -3.2423 34 1 4.2285 -0.9384 2.7576 35 1 5.1895 0.3729 3.4735 36 1 4.0404 -0.9256 5.2300 37 1 2.4709 -0.5945 4.4595 38 1 3.1216 3.9526 6.0316 39 1 2.9801 5.4425 3.8102 40 1 3.1327 3.8332 1.7466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345150498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:40 Heat of formation + Delta-G solvation = -25.141973 kcal Electronic energy + Delta-G solvation = -24266.654518 eV Core-core repulsion = 20854.293887 eV Total energy + Delta-G solvation = -3412.360631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00779 -40.56412 -39.75440 -37.49266 -36.31258 -34.17357 -33.27606 -32.37889 -30.37368 -29.05019 -27.63278 -26.33581 -24.45699 -23.21401 -22.48113 -22.03379 -20.81664 -19.37318 -18.99905 -18.63558 -18.08719 -16.88649 -16.50878 -16.14581 -15.96805 -15.66495 -15.50741 -15.37618 -15.25581 -14.91387 -14.63868 -13.89459 -13.70869 -13.65315 -13.35663 -13.32941 -13.16804 -13.09615 -12.88257 -12.72987 -12.52673 -12.35058 -12.17457 -12.09410 -11.89205 -11.51909 -10.83223 -10.80538 -10.63171 -9.76495 -9.69573 -9.31116 -8.28564 -6.01372 0.00691 1.15178 1.43708 1.46452 1.53770 1.61363 2.12157 2.18427 2.27462 2.77995 3.05835 3.12646 3.34332 3.65667 3.77481 3.84008 3.97769 4.14189 4.29875 4.34502 4.41735 4.47744 4.52389 4.61138 4.69328 4.82890 4.85044 4.97831 5.05929 5.07041 5.21970 5.22130 5.35780 5.42644 5.61390 5.71511 5.90362 5.93272 6.02360 6.14537 6.44814 6.50523 7.08393 7.33498 7.86154 8.60792 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.005388 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.670561 B = 5195.671094 C = 5476.234818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.119 4.119 3 C 0.124 3.876 4 N -0.432 5.432 5 C -0.339 4.339 6 H 0.072 0.928 7 C 0.009 3.991 8 N -0.866 5.866 9 Si 0.986 3.014 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.268 1.268 13 C 0.424 3.576 14 O -0.622 6.622 15 C 0.122 3.878 16 H 0.124 0.876 17 C -0.109 4.109 18 C -0.155 4.155 19 C 0.425 3.575 20 O -0.494 6.494 21 C -0.128 4.128 22 C -0.094 4.094 23 C -0.220 4.220 24 C 0.040 3.960 25 N -0.406 5.406 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.275 0.725 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.163 0.837 39 H 0.170 0.830 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.270 -0.693 6.125 8.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C 0.002 3.998 4 N -0.148 5.148 5 C -0.466 4.466 6 H 0.090 0.910 7 C -0.195 4.195 8 N -0.505 5.505 9 Si 0.811 3.189 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.193 1.193 13 C 0.212 3.788 14 O -0.509 6.509 15 C 0.017 3.983 16 H 0.142 0.858 17 C -0.147 4.147 18 C -0.192 4.192 19 C 0.309 3.691 20 O -0.374 6.374 21 C -0.236 4.236 22 C -0.120 4.120 23 C -0.243 4.243 24 C -0.099 4.099 25 N -0.081 5.081 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.181 0.819 39 H 0.188 0.812 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.815 -1.043 6.345 8.670 hybrid contribution 0.648 0.297 -1.287 1.472 sum -5.167 -0.745 5.058 7.268 Atomic orbital electron populations 1.21525 0.94363 1.01574 1.01323 1.21875 0.96587 0.96298 1.00972 1.21757 0.78441 0.98527 1.01118 1.44035 1.06800 1.58870 1.05127 1.19662 0.97085 1.46148 0.83755 0.91018 1.25901 0.97009 0.95093 1.01454 1.70079 1.11381 1.41365 1.27628 0.84965 0.78028 0.78228 0.77666 1.20652 1.19948 1.19332 1.20233 0.87583 0.85516 0.85515 1.90527 1.15982 1.57671 1.86684 1.21991 1.02082 0.84258 0.89929 0.85811 1.21636 0.99117 0.99036 0.94882 1.22191 1.05198 0.96493 0.95368 1.20485 0.70515 0.90145 0.87958 1.90554 1.41210 1.89680 1.15954 1.20342 1.22219 0.98037 0.82972 1.21538 1.00017 0.90502 0.99948 1.21292 1.12170 1.00494 0.90371 1.22122 1.03877 0.83267 1.00634 1.44427 1.51487 1.06365 1.05848 0.92180 0.92617 0.93214 0.94260 0.90958 0.88257 0.93803 0.91447 0.87148 0.91742 0.85863 0.85246 0.81940 0.81222 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -4.19 5.34 30.59 0.16 -4.03 16 3 C 0.12 4.87 4.18 86.38 0.36 5.23 16 4 N -0.43 -20.07 2.64 -635.54 -1.68 -21.75 16 5 C -0.34 -17.54 9.41 84.04 0.79 -16.75 16 6 H 0.07 4.10 7.29 -2.91 -0.02 4.08 16 7 C 0.01 0.41 5.27 84.93 0.45 0.86 16 8 N -0.87 -39.09 7.89 21.66 0.17 -38.92 16 9 Si 0.99 39.15 29.55 68.60 2.03 41.17 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 12 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 13 C 0.42 19.24 5.99 87.65 0.53 19.76 16 14 O -0.62 -33.64 15.98 -3.07 -0.05 -33.69 16 15 C 0.12 4.25 2.57 44.30 0.11 4.36 16 16 H 0.12 3.87 4.72 -2.39 -0.01 3.86 16 17 C -0.11 -3.27 5.01 30.67 0.15 -3.12 16 18 C -0.16 -3.74 6.11 30.05 0.18 -3.55 16 19 C 0.43 13.15 6.95 26.72 0.19 13.34 16 20 O -0.49 -17.22 17.81 -3.53 -0.06 -17.28 16 21 C -0.13 -4.22 6.50 38.64 0.25 -3.97 16 22 C -0.09 -2.82 10.82 22.45 0.24 -2.58 16 23 C -0.22 -6.37 10.83 22.14 0.24 -6.13 16 24 C 0.04 1.35 10.61 83.81 0.89 2.24 16 25 N -0.41 -14.00 3.03 -497.23 -1.51 -15.50 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.27 6.48 -2.38 -0.02 1.25 16 30 H 0.07 3.03 6.23 -2.39 -0.01 3.01 16 31 H 0.10 4.33 5.87 -2.39 -0.01 4.31 16 32 H 0.04 1.55 6.93 -2.38 -0.02 1.53 16 33 H 0.27 11.69 8.31 -92.71 -0.77 10.92 16 34 H 0.11 2.97 8.14 -2.39 -0.02 2.96 16 35 H 0.06 2.27 7.74 -2.39 -0.02 2.25 16 36 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.16 4.20 8.06 -2.91 -0.02 4.17 16 39 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 40 H 0.16 5.50 7.97 -2.91 -0.02 5.47 16 Total: -1.00 -62.03 324.23 5.21 -56.81 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 1.05 Total: 26.42 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 5.26 Total: 2.74 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -3.01 Total: -76.17 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.11 Total: -50.97 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.17 kcal Total: -62.03 5.21 -56.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345150498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.671 kcal (2) G-P(sol) polarization free energy of solvation -62.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds