Wall clock time and date at job start Tue Mar 31 2020 06:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47337 * 2 1 4 4 H 1.08993 * 109.47144 * 304.99969 * 3 2 1 5 5 C 1.50706 * 109.47323 * 184.99978 * 3 2 1 6 6 H 1.08001 * 120.00139 * 240.00454 * 5 3 2 7 7 C 1.37878 * 119.99859 * 59.99742 * 5 3 2 8 8 N 1.31512 * 119.99830 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99966 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47224 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47114 * 120.00544 * 9 7 5 12 12 H 1.48497 * 109.46869 * 240.00187 * 9 7 5 13 13 N 1.46503 * 109.47032 * 65.00184 * 3 2 1 14 14 C 1.34771 * 119.99918 * 274.99880 * 13 3 2 15 15 O 1.21283 * 120.00068 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00069 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.68633 * 60.52764 * 16 14 13 18 18 C 1.53302 * 109.68848 * 181.10516 * 16 14 13 19 19 C 1.52654 * 110.57025 * 175.87589 * 18 16 14 20 20 C 1.51392 * 109.87076 * 301.24910 * 19 18 16 21 21 O 1.21443 * 121.34748 * 210.83270 * 20 19 18 22 22 C 1.41531 * 117.30869 * 30.55988 * 20 19 18 23 23 C 1.37270 * 129.84683 * 178.86672 * 22 20 19 24 24 C 1.39926 * 106.75005 * 180.27396 * 23 22 20 25 25 C 1.35936 * 107.97820 * 359.94821 * 24 23 22 26 26 N 1.34092 * 109.01817 * 359.85595 * 25 24 23 27 27 H 1.09002 * 109.46794 * 300.00018 * 1 2 3 28 28 H 1.09001 * 109.46786 * 59.99234 * 1 2 3 29 29 H 1.08999 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46794 * 239.99981 * 2 1 3 31 31 H 1.09005 * 109.47075 * 120.00345 * 2 1 3 32 32 H 0.96999 * 120.00138 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99852 * 94.99882 * 13 3 2 34 34 H 1.09000 * 109.30249 * 296.30325 * 18 16 14 35 35 H 1.08997 * 109.30762 * 55.90862 * 18 16 14 36 36 H 1.09012 * 109.45362 * 181.06754 * 19 18 16 37 37 H 1.08997 * 109.25208 * 61.31336 * 19 18 16 38 38 H 1.07996 * 126.62325 * 0.29495 * 23 22 20 39 39 H 1.07997 * 126.00944 * 179.97438 * 24 23 22 40 40 H 1.08008 * 125.49220 * 179.85732 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1474 1.8887 0.6523 7 6 4.1434 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1732 9 14 6.0051 0.8798 -1.3811 10 1 6.5989 1.5451 -0.1937 11 1 6.4962 -0.5192 -1.4627 12 1 6.4000 1.6155 -2.6091 13 7 1.6526 2.0974 1.2519 14 6 0.4353 2.6643 1.3670 15 8 -0.3391 2.6327 0.4342 16 6 0.0369 3.3386 2.6545 17 1 0.7207 4.1608 2.8653 18 6 -1.3948 3.8738 2.5357 19 6 -1.8559 4.4710 3.8627 20 6 -1.7924 3.4195 4.9500 21 8 -2.5656 3.4315 5.8865 22 6 -0.7993 2.4185 4.8280 23 6 -0.5008 1.3695 5.6615 24 6 0.5724 0.6852 5.0801 25 6 0.8983 1.3210 3.9237 26 7 0.0774 2.3676 3.7541 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8292 -0.0605 -2.9502 33 1 2.2721 2.1230 1.9978 34 1 -1.4294 4.6415 1.7627 35 1 -2.0633 3.0572 2.2632 36 1 -2.8810 4.8283 3.7633 37 1 -1.2060 5.3053 4.1266 38 1 -0.9984 1.1202 6.5870 39 1 1.0564 -0.1936 5.4797 40 1 1.6907 1.0300 3.2499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345270344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:05 Heat of formation + Delta-G solvation = -25.149209 kcal Electronic energy + Delta-G solvation = -23862.024065 eV Core-core repulsion = 20449.663121 eV Total energy + Delta-G solvation = -3412.360945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.02405 -39.32355 -38.70051 -35.86361 -34.91632 -32.78787 -31.65724 -30.78204 -29.32971 -27.96849 -27.01557 -23.85666 -22.92046 -22.26807 -21.17482 -20.32456 -19.71108 -18.58871 -17.76382 -17.05272 -16.24075 -15.63835 -15.45717 -15.10872 -14.86801 -14.62207 -14.44003 -14.23387 -13.73463 -13.55593 -12.84573 -12.66548 -12.47426 -12.33276 -12.28563 -12.03767 -11.86556 -11.63914 -11.37106 -11.32470 -11.09474 -10.97069 -10.44935 -10.33917 -9.81863 -9.79145 -9.50257 -9.20681 -8.76862 -8.65171 -8.28752 -8.11109 -6.25765 -4.36552 1.03096 2.29452 2.61642 3.14349 3.15487 3.23884 3.25585 3.30431 3.57439 4.05480 4.20720 4.25378 4.65464 4.79197 4.88075 4.92933 5.06378 5.11504 5.33465 5.37843 5.44947 5.61730 5.72142 5.92065 6.06228 6.19371 6.26021 6.30716 6.50283 6.70014 6.87467 6.88748 7.00603 7.09293 7.14321 7.21498 7.41897 7.52680 7.53501 7.71445 8.01184 8.32013 8.54117 8.77238 9.31229 10.79405 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024858 B = 0.004484 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.133928 B = 6242.395281 C = 6538.855079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.701 5.701 14 C 0.498 3.502 15 O -0.523 6.523 16 C 0.108 3.892 17 H 0.115 0.885 18 C -0.108 4.108 19 C -0.169 4.169 20 C 0.425 3.575 21 O -0.466 6.466 22 C -0.107 4.107 23 C -0.085 4.085 24 C -0.224 4.224 25 C 0.052 3.948 26 N -0.411 5.411 27 H 0.036 0.964 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.101 0.899 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 4.640 10.888 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.350 5.350 14 C 0.280 3.720 15 O -0.399 6.399 16 C 0.003 3.997 17 H 0.133 0.867 18 C -0.147 4.147 19 C -0.207 4.207 20 C 0.306 3.694 21 O -0.344 6.344 22 C -0.214 4.214 23 C -0.111 4.111 24 C -0.247 4.247 25 C -0.086 4.086 26 N -0.088 5.088 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.120 0.880 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.223 0.777 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.648 4.800 10.152 12.570 hybrid contribution 1.540 -0.107 0.068 1.545 sum -4.108 4.693 10.220 11.973 Atomic orbital electron populations 1.21843 0.98316 0.98374 1.01003 1.21945 0.92573 0.99488 1.02582 1.18916 0.94564 0.89317 0.80411 0.93023 1.21212 0.90373 1.39567 1.06568 0.91971 1.24873 0.98744 0.94574 0.95281 1.69890 1.35211 1.37262 1.09289 0.86387 0.84604 0.77902 0.78194 1.19703 1.20764 1.20832 1.46834 1.14096 1.55029 1.19032 1.19956 0.83560 0.80290 0.88186 1.90738 1.51195 1.58294 1.39720 1.22094 1.00955 0.91670 0.85000 0.86748 1.21560 0.92980 1.02807 0.97309 1.22181 1.04972 0.99103 0.94434 1.20155 0.80494 0.83435 0.85292 1.90589 1.38565 1.72843 1.32354 1.19982 1.02030 1.05351 0.93994 1.21271 0.97239 0.93604 0.99027 1.21054 1.02240 1.03964 0.97477 1.22245 0.97468 0.89270 0.99656 1.44250 1.25531 1.22201 1.16864 0.94523 0.93158 0.95587 0.88038 0.94843 0.92445 0.77722 0.87809 0.89479 0.87864 0.88023 0.83524 0.83604 0.80644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.16 0.32 -2.58 16 2 C -0.13 -2.85 5.45 -26.73 -0.15 -3.00 16 3 C 0.27 6.13 2.24 -69.08 -0.15 5.98 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.11 8.73 -34.44 -0.30 -13.41 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.30 11.29 55.43 0.63 -22.68 16 9 Si 0.90 19.52 29.54 -169.99 -5.02 14.50 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -12.62 4.06 -54.93 -0.22 -12.84 16 14 C 0.50 8.50 5.66 -10.99 -0.06 8.44 16 15 O -0.52 -10.66 13.11 5.55 0.07 -10.59 16 16 C 0.11 1.39 3.48 -68.79 -0.24 1.15 16 17 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.11 -1.25 4.53 -26.75 -0.12 -1.37 16 19 C -0.17 -1.71 6.09 -27.72 -0.17 -1.88 16 20 C 0.42 5.71 6.96 -32.71 -0.23 5.48 16 21 O -0.47 -7.42 17.81 5.42 0.10 -7.33 16 22 C -0.11 -1.48 6.50 -83.84 -0.54 -2.02 16 23 C -0.09 -1.13 10.82 -39.30 -0.43 -1.55 16 24 C -0.22 -2.82 10.83 -39.78 -0.43 -3.25 16 25 C 0.05 0.70 10.28 -17.39 -0.18 0.52 16 26 N -0.41 -5.51 3.03 -108.50 -0.33 -5.84 16 27 H 0.04 0.75 5.65 -51.93 -0.29 0.45 16 28 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.39 6.07 6.51 -40.82 -0.27 5.81 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.17 8.01 -51.93 -0.42 0.75 16 36 H 0.10 0.93 8.14 -51.92 -0.42 0.50 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.18 2.31 5.68 -52.48 -0.30 2.01 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -29.12 323.76 -7.98 -37.11 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.31 Total: 8.66 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.78 Total: -5.86 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.07 Total: -41.36 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.17 Total: -17.91 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.12 -7.98 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345270344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.956 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds