Wall clock time and date at job start Tue Mar 31 2020 06:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47337 * 2 1 4 4 H 1.08993 * 109.47144 * 304.99969 * 3 2 1 5 5 C 1.50706 * 109.47323 * 184.99978 * 3 2 1 6 6 H 1.08001 * 120.00139 * 240.00454 * 5 3 2 7 7 C 1.37878 * 119.99859 * 59.99742 * 5 3 2 8 8 N 1.31512 * 119.99830 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99966 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47224 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47114 * 120.00544 * 9 7 5 12 12 H 1.48497 * 109.46869 * 240.00187 * 9 7 5 13 13 N 1.46503 * 109.47032 * 65.00184 * 3 2 1 14 14 C 1.34771 * 119.99918 * 274.99880 * 13 3 2 15 15 O 1.21283 * 120.00068 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00069 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.68633 * 60.52764 * 16 14 13 18 18 C 1.53302 * 109.68848 * 181.10516 * 16 14 13 19 19 C 1.52654 * 110.57025 * 175.87589 * 18 16 14 20 20 C 1.51392 * 109.87076 * 301.24910 * 19 18 16 21 21 O 1.21443 * 121.34748 * 210.83270 * 20 19 18 22 22 C 1.41531 * 117.30869 * 30.55988 * 20 19 18 23 23 C 1.37270 * 129.84683 * 178.86672 * 22 20 19 24 24 C 1.39926 * 106.75005 * 180.27396 * 23 22 20 25 25 C 1.35936 * 107.97820 * 359.94821 * 24 23 22 26 26 N 1.34092 * 109.01817 * 359.85595 * 25 24 23 27 27 H 1.09002 * 109.46794 * 300.00018 * 1 2 3 28 28 H 1.09001 * 109.46786 * 59.99234 * 1 2 3 29 29 H 1.08999 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46794 * 239.99981 * 2 1 3 31 31 H 1.09005 * 109.47075 * 120.00345 * 2 1 3 32 32 H 0.96999 * 120.00138 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99852 * 94.99882 * 13 3 2 34 34 H 1.09000 * 109.30249 * 296.30325 * 18 16 14 35 35 H 1.08997 * 109.30762 * 55.90862 * 18 16 14 36 36 H 1.09012 * 109.45362 * 181.06754 * 19 18 16 37 37 H 1.08997 * 109.25208 * 61.31336 * 19 18 16 38 38 H 1.07996 * 126.62325 * 0.29495 * 23 22 20 39 39 H 1.07997 * 126.00944 * 179.97438 * 24 23 22 40 40 H 1.08008 * 125.49220 * 179.85732 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1474 1.8887 0.6523 7 6 4.1434 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1732 9 14 6.0051 0.8798 -1.3811 10 1 6.5989 1.5451 -0.1937 11 1 6.4962 -0.5192 -1.4627 12 1 6.4000 1.6155 -2.6091 13 7 1.6526 2.0974 1.2519 14 6 0.4353 2.6643 1.3670 15 8 -0.3391 2.6327 0.4342 16 6 0.0369 3.3386 2.6545 17 1 0.7207 4.1608 2.8653 18 6 -1.3948 3.8738 2.5357 19 6 -1.8559 4.4710 3.8627 20 6 -1.7924 3.4195 4.9500 21 8 -2.5656 3.4315 5.8865 22 6 -0.7993 2.4185 4.8280 23 6 -0.5008 1.3695 5.6615 24 6 0.5724 0.6852 5.0801 25 6 0.8983 1.3210 3.9237 26 7 0.0774 2.3676 3.7541 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8292 -0.0605 -2.9502 33 1 2.2721 2.1230 1.9978 34 1 -1.4294 4.6415 1.7627 35 1 -2.0633 3.0572 2.2632 36 1 -2.8810 4.8283 3.7633 37 1 -1.2060 5.3053 4.1266 38 1 -0.9984 1.1202 6.5870 39 1 1.0564 -0.1936 5.4797 40 1 1.6907 1.0300 3.2499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345270344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:05 Heat of formation + Delta-G solvation = -42.028041 kcal Electronic energy + Delta-G solvation = -23862.755986 eV Core-core repulsion = 20449.663121 eV Total energy + Delta-G solvation = -3413.092866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.07547 -40.73778 -39.76950 -37.33496 -36.19489 -34.47093 -33.15524 -32.13321 -30.36180 -29.24863 -28.56735 -25.35347 -24.35702 -23.24049 -22.49967 -21.53057 -21.35771 -19.69773 -19.07278 -18.28504 -17.75258 -17.25848 -16.59690 -16.36075 -16.18309 -15.90643 -15.69409 -15.39644 -15.02592 -14.81710 -14.62119 -13.88511 -13.70385 -13.56942 -13.31901 -13.26806 -13.18064 -13.09456 -12.97291 -12.81721 -12.72150 -12.21824 -12.16454 -12.06835 -11.61809 -11.06245 -10.97805 -10.80800 -10.55345 -9.81879 -9.76064 -9.31331 -8.17001 -6.34055 -0.00115 1.11391 1.44745 1.47577 1.57283 1.59815 2.05719 2.10820 2.24834 2.46391 3.10377 3.13770 3.21838 3.62635 3.78466 3.83356 3.97435 4.21222 4.35976 4.41650 4.46654 4.50590 4.53408 4.72328 4.77089 4.87750 5.01169 5.03507 5.06659 5.22715 5.24250 5.38648 5.46236 5.57822 5.69204 5.73792 5.84794 5.88000 6.11641 6.14541 6.51844 6.71207 6.77119 7.24031 7.41212 8.88171 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024858 B = 0.004484 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.133928 B = 6242.395281 C = 6538.855079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.287 1.287 13 N -0.696 5.696 14 C 0.498 3.502 15 O -0.559 6.559 16 C 0.116 3.884 17 H 0.149 0.851 18 C -0.103 4.103 19 C -0.157 4.157 20 C 0.422 3.578 21 O -0.498 6.498 22 C -0.122 4.122 23 C -0.095 4.095 24 C -0.221 4.221 25 C 0.039 3.961 26 N -0.412 5.412 27 H 0.040 0.960 28 H 0.027 0.973 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.947 5.511 12.491 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.023 0.977 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.213 1.213 13 N -0.347 5.347 14 C 0.282 3.718 15 O -0.437 6.437 16 C 0.012 3.988 17 H 0.166 0.834 18 C -0.141 4.141 19 C -0.194 4.194 20 C 0.306 3.694 21 O -0.377 6.377 22 C -0.228 4.228 23 C -0.121 4.121 24 C -0.244 4.244 25 C -0.099 4.099 26 N -0.089 5.089 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.880 5.685 11.790 13.969 hybrid contribution 1.275 -0.404 -0.431 1.405 sum -3.605 5.281 11.359 13.035 Atomic orbital electron populations 1.21674 0.97262 0.99071 1.00034 1.21786 0.93369 0.99143 1.01585 1.18435 0.93767 0.89145 0.81011 0.97726 1.21566 0.91248 1.38931 1.06681 0.90843 1.25682 1.02866 0.94390 0.95116 1.70036 1.36912 1.38307 1.09860 0.85390 0.79625 0.77701 0.78177 1.18371 1.20748 1.21290 1.46550 1.15087 1.55106 1.17944 1.20611 0.82488 0.79360 0.89335 1.90730 1.52018 1.59350 1.41584 1.22101 1.02571 0.91709 0.82410 0.83360 1.21557 0.91487 1.02486 0.98616 1.22149 1.06597 0.98593 0.92045 1.20590 0.79582 0.83759 0.85461 1.90580 1.39644 1.73684 1.33841 1.20226 1.02394 1.05950 0.94274 1.21554 0.97461 0.93586 0.99496 1.21333 1.01829 1.04247 0.97008 1.22388 0.97763 0.89611 1.00108 1.44259 1.25515 1.22383 1.16787 0.94091 0.95399 0.93965 0.90961 0.93725 0.92634 0.76048 0.86326 0.91751 0.86339 0.85043 0.82563 0.81665 0.80584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.52 71.98 0.61 -4.59 16 2 C -0.12 -5.44 5.45 30.59 0.17 -5.27 16 3 C 0.28 12.88 2.24 44.24 0.10 12.98 16 4 H 0.00 0.27 7.58 -2.39 -0.02 0.25 16 5 C -0.55 -26.39 8.73 25.60 0.22 -26.17 16 6 H 0.07 3.31 7.74 -2.91 -0.02 3.28 16 7 C 0.02 1.01 5.29 84.66 0.45 1.46 16 8 N -0.91 -49.42 11.29 21.45 0.24 -49.18 16 9 Si 0.97 39.71 29.54 68.60 2.03 41.73 16 10 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 11 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 13 N -0.70 -24.55 4.06 -446.10 -1.81 -26.36 16 14 C 0.50 16.54 5.66 87.66 0.50 17.03 16 15 O -0.56 -22.86 13.11 -3.04 -0.04 -22.90 16 16 C 0.12 2.73 3.48 44.30 0.15 2.88 16 17 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 18 C -0.10 -2.15 4.53 30.58 0.14 -2.02 16 19 C -0.16 -2.70 6.09 29.95 0.18 -2.52 16 20 C 0.42 10.55 6.96 26.72 0.19 10.73 16 21 O -0.50 -15.24 17.81 -3.54 -0.06 -15.31 16 22 C -0.12 -3.15 6.50 38.64 0.25 -2.90 16 23 C -0.09 -2.35 10.82 22.45 0.24 -2.11 16 24 C -0.22 -5.12 10.83 22.14 0.24 -4.88 16 25 C 0.04 0.98 10.28 83.81 0.86 1.84 16 26 N -0.41 -10.20 3.03 -497.20 -1.51 -11.71 16 27 H 0.04 1.67 5.65 -2.39 -0.01 1.65 16 28 H 0.03 1.27 7.85 -2.39 -0.02 1.25 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 3.75 5.95 -2.39 -0.01 3.74 16 31 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 33 H 0.40 11.93 6.51 -92.71 -0.60 11.32 16 34 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 1.66 8.01 -2.39 -0.02 1.64 16 36 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.18 4.31 5.68 -2.91 -0.02 4.29 16 Total: -1.00 -64.02 323.76 3.61 -60.41 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.46 Total: 26.84 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 4.30 Total: -3.53 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -3.07 Total: -87.24 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.10 Total: -38.21 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -64.02 3.61 -60.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345270344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.381 kcal (2) G-P(sol) polarization free energy of solvation -64.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds