Wall clock time and date at job start Tue Mar 31 2020 06:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47423 * 2 1 4 4 N 1.46503 * 109.47066 * 120.00069 * 2 1 3 5 5 C 1.46501 * 119.99930 * 86.97352 * 4 2 1 6 6 C 1.50707 * 109.46922 * 90.00128 * 5 4 2 7 7 N 1.34773 * 119.99824 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99720 * 359.97438 * 6 5 4 9 9 C 1.34776 * 120.00013 * 266.97394 * 4 2 1 10 10 O 1.21544 * 119.99988 * 222.09102 * 9 4 2 11 11 C 1.47889 * 119.99879 * 42.08931 * 9 4 2 12 12 C 1.39919 * 120.02544 * 336.65843 * 11 9 4 13 13 C 1.38327 * 120.35880 * 179.73853 * 12 11 9 14 14 C 1.37749 * 120.41010 * 0.56526 * 13 12 11 15 15 C 1.40752 * 120.03946 * 359.69198 * 14 13 12 16 16 C 1.41440 * 120.17503 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00177 * 33.34553 * 16 15 14 18 18 C 1.39939 * 119.99559 * 213.34818 * 16 15 14 19 19 N 1.30829 * 120.00115 * 6.21688 * 18 16 15 20 20 Si 1.86799 * 119.99807 * 186.21729 * 18 16 15 21 21 H 1.48495 * 109.47154 * 90.00045 * 20 18 16 22 22 H 1.48501 * 109.47344 * 210.00077 * 20 18 16 23 23 H 1.48505 * 109.47181 * 330.00064 * 20 18 16 24 24 C 1.38990 * 120.02562 * 156.93717 * 11 9 4 25 25 H 1.08996 * 109.47337 * 300.54762 * 1 2 3 26 26 H 1.09009 * 109.47228 * 60.54532 * 1 2 3 27 27 H 1.09005 * 109.47566 * 180.54246 * 1 2 3 28 28 H 1.09003 * 109.47405 * 240.00095 * 2 1 3 29 29 H 1.09004 * 109.46938 * 221.72705 * 3 2 1 30 30 H 1.09002 * 109.47144 * 341.72106 * 3 2 1 31 31 H 1.08991 * 109.47177 * 101.72272 * 3 2 1 32 32 H 1.08994 * 109.47064 * 330.00340 * 5 4 2 33 33 H 1.08996 * 109.46904 * 209.99829 * 5 4 2 34 34 H 0.96996 * 120.00032 * 359.97438 * 7 6 5 35 35 H 0.97003 * 119.99981 * 180.02562 * 7 6 5 36 36 H 1.08006 * 119.81861 * 0.02562 * 12 11 9 37 37 H 1.07999 * 119.79352 * 180.27664 * 13 12 11 38 38 H 1.07998 * 119.97824 * 179.71931 * 14 13 12 39 39 H 0.96995 * 119.99517 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.19885 * 359.94838 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1993 -2.1443 1.1801 6 6 3.5991 -2.4712 0.7275 7 7 3.9948 -3.7563 0.6360 8 8 4.3694 -1.5779 0.4457 9 6 2.3010 0.0114 2.3114 10 8 3.2988 -0.2470 2.9555 11 6 1.3971 1.0961 2.7514 12 6 0.5578 1.7265 1.8262 13 6 -0.2942 2.7381 2.2312 14 6 -0.3182 3.1446 3.5472 15 6 0.5228 2.5258 4.4911 16 6 0.5002 2.9405 5.8432 17 1 -0.4225 3.2833 6.2875 18 6 1.6735 2.9066 6.6050 19 7 2.8138 2.6085 6.0372 20 14 1.6116 3.2870 8.4328 21 1 1.3776 2.0324 9.1919 22 1 2.9010 3.8892 8.8572 23 1 0.5068 4.2421 8.7025 24 6 1.3849 1.4940 4.0830 25 1 -0.3634 0.5223 0.8850 26 1 -0.3634 0.5054 -0.8949 27 1 -0.3634 -1.0276 0.0097 28 1 1.8933 -0.5138 -0.8900 29 1 2.8843 1.5293 -0.6840 30 1 1.2411 2.1104 -0.3223 31 1 2.3580 1.7154 1.0061 32 1 1.4814 -2.5922 0.4931 33 1 2.0395 -2.5414 2.1825 34 1 3.3788 -4.4707 0.8617 35 1 4.8960 -3.9667 0.3450 36 1 0.5720 1.4184 0.7911 37 1 -0.9414 3.2154 1.5103 38 1 -0.9829 3.9382 3.8548 39 1 3.6271 2.5854 6.5653 40 1 2.0337 1.0126 4.7998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349234979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:16 Heat of formation + Delta-G solvation = 31.304920 kcal Electronic energy + Delta-G solvation = -23871.622976 eV Core-core repulsion = 20461.710066 eV Total energy + Delta-G solvation = -3409.912910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64745 -38.91295 -37.02177 -36.40819 -33.69086 -33.54255 -32.31090 -30.00654 -29.35258 -27.55642 -26.70972 -25.36284 -22.80541 -21.72032 -20.77593 -20.53502 -18.37878 -17.58241 -17.02283 -16.80170 -16.29130 -15.78295 -15.35878 -15.04874 -14.53513 -14.46751 -13.78396 -13.48742 -13.27499 -12.98392 -12.82072 -12.57923 -12.42133 -12.22974 -11.82830 -11.53743 -11.43209 -11.16283 -11.11698 -10.97399 -10.75896 -10.27246 -10.08068 -9.94413 -9.83883 -9.61622 -9.19891 -9.08670 -8.89302 -8.13350 -7.54531 -7.26801 -6.63615 -4.36979 2.16421 2.80474 2.85338 3.11806 3.14280 3.16780 3.23044 3.59547 3.79044 3.99148 4.68475 4.94056 5.02703 5.11957 5.23305 5.33452 5.41617 5.58148 5.63284 5.85920 5.92838 6.04299 6.16264 6.21130 6.43904 6.61466 6.70130 6.73241 6.81125 7.00621 7.05337 7.08503 7.28480 7.39847 7.43306 7.70626 7.79774 7.89630 8.05171 8.22576 8.40071 8.55701 8.79781 8.88461 8.91296 10.31120 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.005182 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.781740 B = 5401.542645 C = 6460.754138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.156 3.844 3 C -0.177 4.177 4 N -0.631 5.631 5 C 0.111 3.889 6 C 0.492 3.508 7 N -0.864 5.864 8 O -0.519 6.519 9 C 0.583 3.417 10 O -0.506 6.506 11 C -0.140 4.140 12 C -0.260 4.260 13 C -0.115 4.115 14 C -0.199 4.199 15 C 0.096 3.904 16 C -0.469 4.469 17 H 0.078 0.922 18 C 0.070 3.930 19 N -0.800 5.800 20 Si 0.912 3.088 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.082 4.082 25 H 0.121 0.879 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.398 0.602 35 H 0.397 0.603 36 H 0.175 0.825 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.282 0.718 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 -10.258 -10.346 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C 0.052 3.948 3 C -0.234 4.234 4 N -0.368 5.368 5 C -0.017 4.017 6 C 0.275 3.725 7 N -0.430 5.430 8 O -0.392 6.392 9 C 0.376 3.624 10 O -0.379 6.379 11 C -0.144 4.144 12 C -0.277 4.277 13 C -0.134 4.134 14 C -0.219 4.219 15 C 0.094 3.906 16 C -0.500 4.500 17 H 0.096 0.904 18 C -0.146 4.146 19 N -0.426 5.426 20 Si 0.737 3.263 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.102 4.102 25 H 0.138 0.862 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.225 0.775 35 H 0.227 0.773 36 H 0.191 0.809 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.742 -9.639 -10.037 14.183 hybrid contribution 0.221 -0.344 0.787 0.887 sum -2.522 -9.983 -9.249 13.841 Atomic orbital electron populations 1.23415 0.95785 1.02913 1.05519 1.20930 0.93480 0.93641 0.86727 1.22915 1.00715 0.94723 1.04999 1.47237 1.71362 1.04893 1.13275 1.21138 0.93140 0.83799 1.03583 1.21641 0.91354 0.82494 0.77036 1.43938 1.18241 1.07922 1.72854 1.90760 1.54857 1.46262 1.47309 1.18815 0.83588 0.81454 0.78581 1.90711 1.24308 1.66726 1.56184 1.19672 0.99877 0.99040 0.95812 1.23066 1.00447 1.02001 1.02234 1.20525 0.99196 0.98091 0.95554 1.21255 1.05480 1.02160 0.92971 1.17572 0.90411 0.89404 0.93192 1.19505 0.95728 1.39540 0.95211 0.90419 1.25893 0.94978 0.93180 1.00576 1.69754 0.99303 1.35986 1.37576 0.86247 0.78503 0.79381 0.82155 1.19447 1.20308 1.18750 1.21650 0.99432 0.95743 0.93342 0.86155 0.91908 0.92956 0.90773 0.93402 0.90626 0.88860 0.87940 0.88133 0.77479 0.77324 0.80871 0.88942 0.88773 0.90723 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.74 8.56 37.15 0.32 -2.42 16 2 C 0.16 2.29 3.13 -67.93 -0.21 2.08 16 3 C -0.18 -2.90 7.91 37.16 0.29 -2.60 16 4 N -0.63 -10.90 1.92 -168.56 -0.32 -11.23 16 5 C 0.11 1.48 5.92 -5.19 -0.03 1.45 16 6 C 0.49 7.22 8.03 -10.98 -0.09 7.13 16 7 N -0.86 -8.08 8.87 31.22 0.28 -7.81 16 8 O -0.52 -10.45 17.25 5.56 0.10 -10.36 16 9 C 0.58 13.03 5.63 -12.31 -0.07 12.96 16 10 O -0.51 -13.24 16.90 5.33 0.09 -13.15 16 11 C -0.14 -3.28 5.11 -105.04 -0.54 -3.82 16 12 C -0.26 -5.23 4.55 -38.92 -0.18 -5.41 16 13 C -0.12 -2.38 10.01 -39.73 -0.40 -2.78 16 14 C -0.20 -4.68 9.78 -38.81 -0.38 -5.06 16 15 C 0.10 2.55 5.51 -106.87 -0.59 1.96 16 16 C -0.47 -12.50 9.05 -37.73 -0.34 -12.84 16 17 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 18 C 0.07 1.82 5.30 -17.34 -0.09 1.73 16 19 N -0.80 -21.96 10.93 55.55 0.61 -21.36 16 20 Si 0.91 19.32 29.56 -169.99 -5.03 14.30 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.08 -2.17 8.16 -38.45 -0.31 -2.48 16 25 H 0.12 1.82 4.14 -53.58 -0.22 1.60 16 26 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.08 6.65 -51.93 -0.35 0.73 16 31 H 0.09 1.92 4.00 -51.93 -0.21 1.71 16 32 H 0.10 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.10 1.29 8.03 -51.93 -0.42 0.87 16 34 H 0.40 2.22 8.83 -40.82 -0.36 1.86 16 35 H 0.40 3.42 8.93 -40.82 -0.36 3.06 16 36 H 0.18 2.90 0.66 -98.98 -0.07 2.84 16 37 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.28 7.19 8.30 -40.82 -0.34 6.85 16 40 H 0.13 3.73 6.17 -52.49 -0.32 3.41 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -34.62 323.67 -6.82 -41.44 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -4.81 Total: 13.40 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.62 Total: -10.11 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.56 Total: -40.39 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.19 Total: -23.51 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.62 -6.82 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349234979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.744 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds