Wall clock time and date at job start Tue Mar 31 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47423 * 2 1 4 4 N 1.46503 * 109.47066 * 120.00069 * 2 1 3 5 5 C 1.46501 * 119.99930 * 86.97352 * 4 2 1 6 6 C 1.50707 * 109.46922 * 90.00128 * 5 4 2 7 7 N 1.34773 * 119.99824 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99720 * 359.97438 * 6 5 4 9 9 C 1.34776 * 120.00013 * 266.97394 * 4 2 1 10 10 O 1.21544 * 119.99988 * 222.09102 * 9 4 2 11 11 C 1.47889 * 119.99879 * 42.08931 * 9 4 2 12 12 C 1.39919 * 120.02544 * 336.65843 * 11 9 4 13 13 C 1.38327 * 120.35880 * 179.73853 * 12 11 9 14 14 C 1.37749 * 120.41010 * 0.56526 * 13 12 11 15 15 C 1.40752 * 120.03946 * 359.69198 * 14 13 12 16 16 C 1.41440 * 120.17503 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00177 * 33.34553 * 16 15 14 18 18 C 1.39939 * 119.99559 * 213.34818 * 16 15 14 19 19 N 1.30829 * 120.00115 * 6.21688 * 18 16 15 20 20 Si 1.86799 * 119.99807 * 186.21729 * 18 16 15 21 21 H 1.48495 * 109.47154 * 90.00045 * 20 18 16 22 22 H 1.48501 * 109.47344 * 210.00077 * 20 18 16 23 23 H 1.48505 * 109.47181 * 330.00064 * 20 18 16 24 24 C 1.38990 * 120.02562 * 156.93717 * 11 9 4 25 25 H 1.08996 * 109.47337 * 300.54762 * 1 2 3 26 26 H 1.09009 * 109.47228 * 60.54532 * 1 2 3 27 27 H 1.09005 * 109.47566 * 180.54246 * 1 2 3 28 28 H 1.09003 * 109.47405 * 240.00095 * 2 1 3 29 29 H 1.09004 * 109.46938 * 221.72705 * 3 2 1 30 30 H 1.09002 * 109.47144 * 341.72106 * 3 2 1 31 31 H 1.08991 * 109.47177 * 101.72272 * 3 2 1 32 32 H 1.08994 * 109.47064 * 330.00340 * 5 4 2 33 33 H 1.08996 * 109.46904 * 209.99829 * 5 4 2 34 34 H 0.96996 * 120.00032 * 359.97438 * 7 6 5 35 35 H 0.97003 * 119.99981 * 180.02562 * 7 6 5 36 36 H 1.08006 * 119.81861 * 0.02562 * 12 11 9 37 37 H 1.07999 * 119.79352 * 180.27664 * 13 12 11 38 38 H 1.07998 * 119.97824 * 179.71931 * 14 13 12 39 39 H 0.96995 * 119.99517 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.19885 * 359.94838 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1993 -2.1443 1.1801 6 6 3.5991 -2.4712 0.7275 7 7 3.9948 -3.7563 0.6360 8 8 4.3694 -1.5779 0.4457 9 6 2.3010 0.0114 2.3114 10 8 3.2988 -0.2470 2.9555 11 6 1.3971 1.0961 2.7514 12 6 0.5578 1.7265 1.8262 13 6 -0.2942 2.7381 2.2312 14 6 -0.3182 3.1446 3.5472 15 6 0.5228 2.5258 4.4911 16 6 0.5002 2.9405 5.8432 17 1 -0.4225 3.2833 6.2875 18 6 1.6735 2.9066 6.6050 19 7 2.8138 2.6085 6.0372 20 14 1.6116 3.2870 8.4328 21 1 1.3776 2.0324 9.1919 22 1 2.9010 3.8892 8.8572 23 1 0.5068 4.2421 8.7025 24 6 1.3849 1.4940 4.0830 25 1 -0.3634 0.5223 0.8850 26 1 -0.3634 0.5054 -0.8949 27 1 -0.3634 -1.0276 0.0097 28 1 1.8933 -0.5138 -0.8900 29 1 2.8843 1.5293 -0.6840 30 1 1.2411 2.1104 -0.3223 31 1 2.3580 1.7154 1.0061 32 1 1.4814 -2.5922 0.4931 33 1 2.0395 -2.5414 2.1825 34 1 3.3788 -4.4707 0.8617 35 1 4.8960 -3.9667 0.3450 36 1 0.5720 1.4184 0.7911 37 1 -0.9414 3.2154 1.5103 38 1 -0.9829 3.9382 3.8548 39 1 3.6271 2.5854 6.5653 40 1 2.0337 1.0126 4.7998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349234979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:15 Heat of formation + Delta-G solvation = 5.006603 kcal Electronic energy + Delta-G solvation = -23872.763356 eV Core-core repulsion = 20461.710066 eV Total energy + Delta-G solvation = -3411.053290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.13324 -40.17867 -38.78419 -37.97863 -35.46161 -34.64363 -33.71596 -31.76425 -31.14865 -28.83003 -27.90261 -27.21025 -24.38268 -23.30670 -22.34725 -21.84813 -19.99304 -18.99977 -18.37927 -18.07801 -17.74220 -17.19871 -16.92942 -16.63218 -16.12685 -15.76531 -15.30651 -15.08732 -14.71812 -14.55776 -14.29014 -14.16956 -14.02609 -13.49985 -13.32949 -13.13886 -12.87098 -12.77952 -12.59216 -12.38297 -12.10619 -12.04382 -11.91356 -11.57383 -11.22937 -11.08037 -10.77081 -10.60648 -10.44575 -9.58403 -9.29660 -9.10304 -8.53711 -6.36968 0.36606 1.05500 1.35195 1.45617 1.50169 1.69086 1.88229 1.96646 2.21558 2.73909 2.82277 3.66478 3.70572 3.92554 4.04909 4.17325 4.19413 4.29136 4.37066 4.54440 4.62485 4.73930 4.88089 4.94868 5.03696 5.07408 5.17465 5.23753 5.31004 5.37984 5.56346 5.58449 5.76181 5.92688 5.95235 5.97827 6.08777 6.33961 6.41285 6.52626 6.65656 6.94401 6.99520 7.15171 7.43098 8.42280 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.005182 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.781740 B = 5401.542645 C = 6460.754138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.147 3.853 3 C -0.185 4.185 4 N -0.625 5.625 5 C 0.102 3.898 6 C 0.488 3.512 7 N -0.837 5.837 8 O -0.583 6.583 9 C 0.583 3.417 10 O -0.562 6.562 11 C -0.153 4.153 12 C -0.226 4.226 13 C -0.117 4.117 14 C -0.201 4.201 15 C 0.060 3.940 16 C -0.506 4.506 17 H 0.080 0.920 18 C 0.023 3.977 19 N -0.849 5.849 20 Si 0.985 3.015 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.251 1.251 24 C -0.118 4.118 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.419 0.581 35 H 0.403 0.597 36 H 0.219 0.781 37 H 0.142 0.858 38 H 0.106 0.894 39 H 0.280 0.720 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 -11.409 -13.329 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C 0.045 3.955 3 C -0.241 4.241 4 N -0.360 5.360 5 C -0.024 4.024 6 C 0.272 3.728 7 N -0.403 5.403 8 O -0.462 6.462 9 C 0.376 3.624 10 O -0.439 6.439 11 C -0.156 4.156 12 C -0.243 4.243 13 C -0.134 4.134 14 C -0.221 4.221 15 C 0.058 3.942 16 C -0.537 4.537 17 H 0.098 0.902 18 C -0.188 4.188 19 N -0.477 5.477 20 Si 0.806 3.194 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.174 1.174 24 C -0.138 4.138 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.065 0.935 32 H 0.178 0.822 33 H 0.121 0.879 34 H 0.251 0.749 35 H 0.234 0.766 36 H 0.234 0.766 37 H 0.160 0.840 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.281 -10.871 -13.066 17.799 hybrid contribution 0.934 -0.123 1.407 1.693 sum -4.347 -10.994 -11.659 16.604 Atomic orbital electron populations 1.23254 0.93246 1.04951 1.05542 1.21278 0.95332 0.92521 0.86355 1.22956 1.02154 0.96758 1.02278 1.47237 1.70087 1.06486 1.12219 1.21591 0.93928 0.81569 1.05351 1.21873 0.91411 0.83224 0.76321 1.43680 1.18966 1.06913 1.70701 1.90744 1.56453 1.48368 1.50646 1.18772 0.82734 0.81255 0.79612 1.90681 1.26414 1.68287 1.58551 1.19976 1.00533 0.99890 0.95234 1.23796 0.97261 0.99609 1.03611 1.21051 0.99412 0.97790 0.95196 1.21559 1.04491 1.02030 0.94003 1.17890 0.91840 0.90211 0.94251 1.19787 0.96254 1.41333 0.96303 0.90157 1.26811 0.94189 0.92550 1.05286 1.69910 0.99994 1.38523 1.39264 0.85153 0.78749 0.79398 0.76064 1.18930 1.19946 1.17446 1.21416 1.00664 0.97260 0.94497 0.88941 0.88397 0.90239 0.87908 0.92913 0.87741 0.93530 0.82164 0.87940 0.74915 0.76562 0.76562 0.84045 0.87585 0.90974 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.07 8.56 71.98 0.62 -3.45 16 2 C 0.15 3.75 3.13 44.99 0.14 3.89 16 3 C -0.18 -5.57 7.91 71.98 0.57 -5.00 16 4 N -0.62 -20.57 1.92 -805.49 -1.55 -22.12 16 5 C 0.10 2.44 5.92 85.64 0.51 2.95 16 6 C 0.49 13.54 8.03 87.66 0.70 14.25 16 7 N -0.84 -13.63 8.87 -173.53 -1.54 -15.17 16 8 O -0.58 -23.55 17.25 -3.03 -0.05 -23.60 16 9 C 0.58 26.84 5.63 86.80 0.49 27.33 16 10 O -0.56 -31.36 16.90 -3.85 -0.07 -31.42 16 11 C -0.15 -7.35 5.11 -20.13 -0.10 -7.46 16 12 C -0.23 -8.70 4.55 22.70 0.10 -8.60 16 13 C -0.12 -4.53 10.01 22.18 0.22 -4.30 16 14 C -0.20 -9.47 9.78 22.77 0.22 -9.24 16 15 C 0.06 3.33 5.51 -21.32 -0.12 3.21 16 16 C -0.51 -28.49 9.05 23.47 0.21 -28.28 16 17 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 18 C 0.02 1.26 5.30 85.25 0.45 1.71 16 19 N -0.85 -50.44 10.93 21.83 0.24 -50.20 16 20 Si 0.99 41.64 29.56 68.60 2.03 43.67 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 24 C -0.12 -6.72 8.16 23.00 0.19 -6.53 16 25 H 0.09 2.34 4.14 -3.94 -0.02 2.32 16 26 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 29 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.10 2.49 6.65 -2.39 -0.02 2.47 16 31 H 0.05 1.89 4.00 -2.39 -0.01 1.88 16 32 H 0.16 1.95 8.07 -2.39 -0.02 1.93 16 33 H 0.10 2.46 8.03 -2.39 -0.02 2.44 16 34 H 0.42 3.25 8.83 -92.71 -0.82 2.43 16 35 H 0.40 6.16 8.93 -92.71 -0.83 5.33 16 36 H 0.22 6.43 0.66 -46.58 -0.03 6.40 16 37 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 38 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.28 15.54 8.30 -92.71 -0.77 14.77 16 40 H 0.09 5.67 6.17 -2.91 -0.02 5.65 16 Total: -1.00 -86.33 323.67 2.70 -83.63 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.57 Total: 34.73 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.21 Total: -19.52 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.85 Total: -87.49 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -0.12 Total: -55.03 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -86.33 2.70 -83.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349234979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.635 kcal (2) G-P(sol) polarization free energy of solvation -86.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds